Wall clock time and date at job start Mon Mar 30 2020 04:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35858 * 116.99816 * 2 1 4 4 C 1.38064 * 120.29918 * 359.97438 * 3 2 1 5 5 C 1.39941 * 119.39597 * 180.02562 * 4 3 2 6 6 C 1.35346 * 120.08032 * 359.95589 * 5 4 3 7 7 N 1.36296 * 121.03946 * 0.04827 * 6 5 4 8 8 C 1.36738 * 120.73202 * 359.97438 * 7 6 5 9 9 N 1.33458 * 121.81404 * 180.02562 * 8 7 6 10 10 C 1.31338 * 122.67308 * 359.97438 * 9 8 7 11 11 C 1.41206 * 119.60892 * 0.02562 * 10 9 8 12 12 C 1.40435 * 121.15347 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00016 * 155.68422 * 12 11 10 14 14 C 1.39865 * 120.00202 * 335.68317 * 12 11 10 15 15 N 1.30981 * 119.99882 * 343.71704 * 14 12 11 16 16 Si 1.86803 * 119.99931 * 163.71445 * 14 12 11 17 17 H 1.48494 * 109.47086 * 60.00239 * 16 14 12 18 18 H 1.48506 * 109.47027 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47144 * 299.99787 * 16 14 12 20 20 C 1.35226 * 119.17657 * 179.97438 * 7 6 5 21 21 O 1.21795 * 120.93807 * 0.26625 * 20 7 6 22 22 H 1.08994 * 109.46708 * 299.99435 * 1 2 3 23 23 H 1.08989 * 109.47369 * 59.99953 * 1 2 3 24 24 H 1.09001 * 109.46310 * 179.97438 * 1 2 3 25 25 H 1.07995 * 120.30435 * 0.02562 * 4 3 2 26 26 H 1.07998 * 119.96296 * 179.97438 * 5 4 3 27 27 H 1.07999 * 119.48033 * 180.02562 * 6 5 4 28 28 H 1.07996 * 120.19606 * 179.97438 * 10 9 8 29 29 H 0.97000 * 119.99817 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 1.2999 2.3723 -0.0005 5 6 1.9547 3.6090 -0.0011 6 6 3.3072 3.6605 -0.0002 7 7 4.0539 2.5203 0.0003 8 6 3.4534 1.2918 0.0004 9 7 4.1633 0.1617 0.0013 10 6 5.4766 0.1494 0.0018 11 6 6.1858 1.3705 0.0017 12 6 7.5899 1.3952 0.0027 13 1 8.1151 2.2567 -0.3824 14 6 8.3082 0.3041 0.5025 15 7 7.7078 -0.5883 1.2500 16 14 10.1238 0.1195 0.1038 17 1 10.8651 1.3008 0.6136 18 1 10.6495 -1.1111 0.7478 19 1 10.3001 0.0215 -1.3674 20 6 5.4028 2.6156 0.0007 21 8 5.9537 3.7018 0.0055 22 1 -0.3632 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 0.2209 2.3271 -0.0005 26 1 1.3802 4.5236 -0.0019 27 1 3.8026 4.6202 -0.0002 28 1 6.0110 -0.7891 0.0029 29 1 8.2061 -1.3448 1.5969 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260036809.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:24 Heat of formation + Delta-G solvation = -4.254516 kcal Electronic energy + Delta-G solvation = -17328.770890 eV Core-core repulsion = 14411.240343 eV Total energy + Delta-G solvation = -2917.530547 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.83044 -38.63388 -36.40997 -35.97651 -34.17349 -31.89911 -30.27328 -28.83400 -27.10249 -25.75166 -23.26058 -22.73174 -21.50256 -18.83880 -17.53156 -17.02017 -16.92739 -16.07757 -15.53845 -15.39160 -14.65737 -14.44741 -14.21508 -13.61966 -13.30254 -12.55742 -12.21810 -12.12013 -12.01243 -11.57742 -11.46570 -11.24569 -10.92828 -10.87891 -10.74760 -10.70841 -9.74458 -9.09012 -9.01198 -8.51182 -7.96981 -7.42587 -6.74697 -4.37525 1.37726 1.87274 2.79968 2.83056 2.86418 3.30239 3.47764 3.54523 3.62924 4.12272 4.31739 5.27760 5.29873 5.33829 5.41576 5.54010 5.60481 5.68355 5.87755 6.14131 6.20010 6.53463 6.68112 6.82313 6.89537 6.98744 7.30992 7.67080 7.78585 7.85611 7.94324 8.12043 8.25685 9.10671 9.46413 9.51488 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.034537 B = 0.007113 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.533794 B = 3935.315742 C = 4669.495038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.290 6.290 3 C 0.204 3.796 4 C -0.296 4.296 5 C -0.127 4.127 6 C 0.019 3.981 7 N -0.412 5.412 8 C 0.134 3.866 9 N -0.429 5.429 10 C -0.021 4.021 11 C -0.022 4.022 12 C -0.332 4.332 13 H 0.102 0.898 14 C 0.053 3.947 15 N -0.739 5.739 16 Si 0.935 3.065 17 H -0.257 1.257 18 H -0.270 1.270 19 H -0.255 1.255 20 C 0.480 3.520 21 O -0.564 6.564 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.095 0.905 25 H 0.121 0.879 26 H 0.127 0.873 27 H 0.152 0.848 28 H 0.162 0.838 29 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.063 -0.344 -1.268 6.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.201 6.201 3 C 0.155 3.845 4 C -0.319 4.319 5 C -0.149 4.149 6 C -0.099 4.099 7 N -0.126 5.126 8 C -0.099 4.099 9 N -0.144 5.144 10 C -0.179 4.179 11 C -0.032 4.032 12 C -0.361 4.361 13 H 0.120 0.880 14 C -0.171 4.171 15 N -0.360 5.360 16 Si 0.756 3.244 17 H -0.181 1.181 18 H -0.194 1.194 19 H -0.179 1.179 20 C 0.280 3.720 21 O -0.448 6.448 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.113 0.887 25 H 0.139 0.861 26 H 0.145 0.855 27 H 0.169 0.831 28 H 0.178 0.822 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.957 -1.007 -1.103 6.141 hybrid contribution 0.752 0.794 0.089 1.097 sum -5.205 -0.213 -1.014 5.307 Atomic orbital electron populations 1.23015 0.79339 1.03239 1.01073 1.86133 1.20086 1.26446 1.87413 1.18250 0.88911 0.84199 0.93097 1.20672 0.98834 0.91505 1.20912 1.20017 0.92299 0.97444 1.05111 1.21484 0.92238 0.91192 1.04986 1.42637 1.08005 1.05525 1.56435 1.17716 0.90312 0.80468 1.21368 1.67533 1.10596 1.24156 1.12121 1.22562 0.86833 0.97705 1.10764 1.20687 0.94846 0.90264 0.97393 1.19757 0.90718 1.01049 1.24533 0.88050 1.26362 1.03380 0.94408 0.92995 1.69832 1.39928 1.08394 1.17830 0.85882 0.78605 0.79281 0.80601 1.18096 1.19446 1.17900 1.19181 0.79775 0.91439 0.81570 1.90693 1.69378 1.29559 1.55153 0.92961 0.92955 0.88674 0.86072 0.85472 0.83090 0.82152 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.82 101.05 0.99 1.36 15 2 O -0.29 -5.62 10.20 -19.29 -0.20 -5.81 15 3 C 0.20 4.33 6.74 -38.60 -0.26 4.07 15 4 C -0.30 -5.35 9.12 -39.01 -0.36 -5.71 15 5 C -0.13 -2.27 9.99 -39.97 -0.40 -2.67 15 6 C 0.02 0.40 10.07 -16.60 -0.17 0.23 15 7 N -0.41 -10.24 2.77 -62.88 -0.17 -10.41 15 8 C 0.13 3.33 7.35 -155.56 -1.14 2.19 15 9 N -0.43 -11.21 9.91 -11.61 -0.12 -11.33 15 10 C -0.02 -0.55 9.96 -16.64 -0.17 -0.71 15 11 C -0.02 -0.59 5.76 -104.36 -0.60 -1.19 15 12 C -0.33 -8.34 8.82 -38.15 -0.34 -8.67 15 13 H 0.10 2.49 7.80 -52.48 -0.41 2.08 15 14 C 0.05 1.19 5.20 -17.31 -0.09 1.10 15 15 N -0.74 -17.02 10.91 55.55 0.61 -16.41 15 16 Si 0.93 16.48 29.59 -169.99 -5.03 11.45 15 17 H -0.26 -4.54 7.11 56.52 0.40 -4.13 15 18 H -0.27 -4.54 7.11 56.52 0.40 -4.14 15 19 H -0.26 -4.45 7.11 56.52 0.40 -4.05 15 20 C 0.48 12.96 7.58 -12.47 -0.09 12.86 15 21 O -0.56 -15.80 16.24 5.10 0.08 -15.71 15 22 H 0.05 0.60 7.68 -51.93 -0.40 0.21 15 23 H 0.05 0.60 7.67 -51.94 -0.40 0.20 15 24 H 0.09 0.98 8.14 -51.93 -0.42 0.55 15 25 H 0.12 1.77 6.34 -52.49 -0.33 1.44 15 26 H 0.13 1.78 8.06 -52.49 -0.42 1.36 15 27 H 0.15 3.03 7.31 -52.49 -0.38 2.65 15 28 H 0.16 4.15 6.18 -52.49 -0.32 3.83 15 29 H 0.30 6.04 8.30 -40.82 -0.34 5.70 15 LS Contribution 258.84 15.07 3.90 3.90 Total: -1.00 -29.99 258.84 -5.78 -35.77 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -2.23 Total: 5.69 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -2.62 Total: 2.87 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.32 Total: -38.15 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.11 Total: -21.53 kcal Atomic # 14 Polarization: 16.48 SS G_CDS: -5.03 Total: 11.45 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.99 -5.78 -35.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260036809.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.511 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds