Wall clock time and date at job start Mon Mar 30 2020 03:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99961 * 2 1 4 4 H 1.48493 * 109.47144 * 270.00059 * 3 2 1 5 5 H 1.48499 * 109.46996 * 29.99836 * 3 2 1 6 6 H 1.48495 * 109.46822 * 149.99882 * 3 2 1 7 7 C 1.37879 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99586 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00013 * 180.02562 * 7 2 1 10 10 N 1.46494 * 109.47189 * 179.97438 * 9 7 2 11 11 C 1.35945 * 119.70232 * 90.00048 * 10 9 7 12 12 N 1.29822 * 123.33260 * 179.71456 * 11 10 9 13 13 C 1.35632 * 121.62360 * 0.26494 * 12 11 10 14 14 C 1.40112 * 121.63948 * 180.02562 * 13 12 11 15 15 O 1.35910 * 120.20998 * 359.95868 * 14 13 12 16 16 C 1.38136 * 119.58155 * 179.97438 * 14 13 12 17 17 C 1.38822 * 120.74984 * 0.02647 * 16 14 13 18 18 C 1.37757 * 120.63719 * 359.95074 * 17 16 14 19 19 C 1.39397 * 119.62423 * 0.04493 * 18 17 16 20 20 C 1.35345 * 119.71035 * 270.23924 * 10 9 7 21 21 O 1.21724 * 121.29146 * 0.02562 * 20 10 9 22 22 H 0.97005 * 120.00224 * 0.02562 * 1 2 3 23 23 H 1.09008 * 109.46970 * 59.99875 * 9 7 2 24 24 H 1.09004 * 109.47314 * 300.00612 * 9 7 2 25 25 H 1.08002 * 118.33771 * 0.02562 * 11 10 9 26 26 H 0.96696 * 113.99856 * 89.99462 * 15 14 13 27 27 H 1.08000 * 119.62450 * 180.02562 * 16 14 13 28 28 H 1.08000 * 119.67819 * 179.97438 * 17 16 14 29 29 H 1.07991 * 120.18792 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0022 11 6 4.2248 -3.2111 -1.1781 12 7 4.6618 -4.4309 -1.2593 13 6 4.9230 -5.1680 -0.1511 14 6 5.3951 -6.4843 -0.2384 15 8 5.6029 -7.0572 -1.4532 16 6 5.6478 -7.1962 0.9181 17 6 5.4387 -6.6224 2.1648 18 6 4.9755 -5.3297 2.2738 19 6 4.7136 -4.5920 1.1204 20 6 4.2183 -3.2085 1.1783 21 8 4.0165 -2.6531 2.2424 22 1 -0.4851 0.8401 -0.0004 23 1 3.8745 -0.6800 0.8912 24 1 3.8752 -0.6804 -0.8888 25 1 4.0350 -2.6726 -2.0948 26 1 6.4945 -6.9247 -1.8032 27 1 6.0121 -8.2107 0.8516 28 1 5.6416 -7.1950 3.0578 29 1 4.8157 -4.8904 3.2473 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260039917.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:09 Heat of formation + Delta-G solvation = -25.166324 kcal Electronic energy + Delta-G solvation = -17099.866695 eV Core-core repulsion = 14181.429344 eV Total energy + Delta-G solvation = -2918.437351 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.14365 -38.88224 -36.99670 -36.38106 -34.26229 -32.52521 -30.44602 -29.40196 -28.36846 -24.43738 -24.32911 -22.08124 -21.66795 -18.80652 -18.62006 -17.38243 -17.28144 -16.43784 -15.39562 -15.16710 -15.06033 -14.75926 -14.33604 -13.89544 -13.62510 -12.70461 -12.66487 -12.45173 -12.25857 -12.08521 -11.90972 -11.27155 -10.83945 -10.81057 -10.47503 -9.86813 -9.69214 -9.53582 -9.21271 -8.86512 -8.81523 -7.61665 -6.30052 -4.34763 0.77839 0.90809 2.50485 2.99407 3.10962 3.15006 3.22876 3.26764 4.08351 4.19548 4.22797 4.35071 4.64529 4.94245 5.01536 5.07038 5.29020 5.37916 5.65167 5.78350 6.03483 6.23280 6.26021 6.37394 6.53148 6.63246 6.88476 7.18393 7.24614 7.71006 8.12745 8.25609 8.32937 8.70096 9.24794 10.82301 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.038659 B = 0.006272 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.098878 B = 4463.048169 C = 4808.282182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.081 3.919 3 Si 0.876 3.124 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.078 0.922 9 C 0.195 3.805 10 N -0.521 5.521 11 C 0.398 3.602 12 N -0.545 5.545 13 C 0.142 3.858 14 C 0.101 3.899 15 O -0.480 6.480 16 C -0.106 4.106 17 C -0.139 4.139 18 C -0.047 4.047 19 C -0.189 4.189 20 C 0.543 3.457 21 O -0.503 6.503 22 H 0.269 0.731 23 H 0.057 0.943 24 H 0.046 0.954 25 H 0.200 0.800 26 H 0.385 0.615 27 H 0.134 0.866 28 H 0.132 0.868 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.287 -9.633 -0.901 16.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.124 4.124 3 Si 0.702 3.298 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.096 0.904 9 C 0.075 3.925 10 N -0.238 5.238 11 C 0.111 3.889 12 N -0.268 5.268 13 C 0.030 3.970 14 C 0.055 3.945 15 O -0.289 6.289 16 C -0.126 4.126 17 C -0.158 4.158 18 C -0.066 4.066 19 C -0.195 4.195 20 C 0.335 3.665 21 O -0.377 6.377 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.216 0.784 26 H 0.240 0.760 27 H 0.151 0.849 28 H 0.150 0.850 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 12.564 -9.787 -0.792 15.945 hybrid contribution 0.457 1.387 0.609 1.582 sum 13.020 -8.400 -0.184 15.496 Atomic orbital electron populations 1.69873 1.06255 1.27542 1.48422 1.24813 0.94819 0.99003 0.93744 0.86852 0.80565 0.83538 0.78894 1.19594 1.20522 1.18750 1.21094 0.87872 0.95531 1.53972 0.90354 1.20262 0.97249 0.75495 0.99478 1.46854 1.53432 1.17348 1.06211 1.24862 0.85071 0.88646 0.90292 1.68723 1.24039 1.05199 1.28803 1.19241 0.95956 0.93543 0.88288 1.17895 1.02135 0.89044 0.85465 1.84839 1.36511 1.75653 1.31885 1.21433 0.99347 1.00242 0.91587 1.20917 1.02491 0.95132 0.97218 1.21021 0.94300 0.93430 0.97855 1.20662 1.08538 0.95457 0.94869 1.18248 0.78344 0.85976 0.83932 1.90833 1.50578 1.67853 1.28403 0.92044 0.92526 0.93600 0.78377 0.75981 0.84854 0.85014 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.08 13.96 55.43 0.77 -25.30 15 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 15 3 Si 0.88 19.92 27.47 -169.99 -4.67 15.25 15 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.26 -5.77 6.54 56.52 0.37 -5.40 15 7 C -0.55 -14.85 9.94 -34.44 -0.34 -15.20 15 8 H 0.08 2.39 8.06 -52.49 -0.42 1.97 15 9 C 0.20 4.39 4.18 -5.20 -0.02 4.36 15 10 N -0.52 -10.71 2.59 -120.13 -0.31 -11.02 15 11 C 0.40 6.90 11.41 -90.10 -1.03 5.87 15 12 N -0.54 -9.53 10.18 -11.91 -0.12 -9.65 15 13 C 0.14 2.46 6.64 -84.38 -0.56 1.90 15 14 C 0.10 1.47 6.74 -38.92 -0.26 1.21 15 15 O -0.48 -6.28 13.32 -19.46 -0.26 -6.53 15 16 C -0.11 -1.28 9.95 -39.40 -0.39 -1.67 15 17 C -0.14 -1.68 10.01 -39.54 -0.40 -2.07 15 18 C -0.05 -0.71 9.67 -39.33 -0.38 -1.09 15 19 C -0.19 -3.46 5.89 -104.78 -0.62 -4.08 15 20 C 0.54 11.72 7.66 -12.43 -0.10 11.62 15 21 O -0.50 -12.26 16.32 5.17 0.08 -12.18 15 22 H 0.27 7.37 8.31 -40.82 -0.34 7.04 15 23 H 0.06 1.35 6.52 -51.92 -0.34 1.01 15 24 H 0.05 0.90 7.42 -51.93 -0.39 0.51 15 25 H 0.20 2.73 7.99 -52.49 -0.42 2.31 15 26 H 0.38 3.16 9.06 45.56 0.41 3.57 15 27 H 0.13 1.20 8.06 -52.49 -0.42 0.78 15 28 H 0.13 1.16 8.06 -52.49 -0.42 0.74 15 29 H 0.14 2.01 7.83 -52.49 -0.41 1.60 15 LS Contribution 263.47 15.07 3.97 3.97 Total: -1.00 -33.53 263.47 -6.30 -39.84 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -1.58 Total: 2.65 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -4.19 Total: 2.99 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.34 Total: -45.98 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.17 Total: -18.71 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.67 Total: 15.25 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -33.53 -6.30 -39.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260039917.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.669 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds