Wall clock time and date at job start Mon Mar 30 2020 03:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99961 * 2 1 4 4 H 1.48493 * 109.47144 * 270.00059 * 3 2 1 5 5 H 1.48499 * 109.46996 * 29.99836 * 3 2 1 6 6 H 1.48495 * 109.46822 * 149.99882 * 3 2 1 7 7 C 1.37879 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99586 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00013 * 180.02562 * 7 2 1 10 10 N 1.46494 * 109.47189 * 179.97438 * 9 7 2 11 11 C 1.35945 * 119.70232 * 90.00048 * 10 9 7 12 12 N 1.29822 * 123.33260 * 179.71456 * 11 10 9 13 13 C 1.35632 * 121.62360 * 0.26494 * 12 11 10 14 14 C 1.40112 * 121.63948 * 180.02562 * 13 12 11 15 15 O 1.35910 * 120.20998 * 359.95868 * 14 13 12 16 16 C 1.38136 * 119.58155 * 179.97438 * 14 13 12 17 17 C 1.38822 * 120.74984 * 0.02647 * 16 14 13 18 18 C 1.37757 * 120.63719 * 359.95074 * 17 16 14 19 19 C 1.39397 * 119.62423 * 0.04493 * 18 17 16 20 20 C 1.35345 * 119.71035 * 270.23924 * 10 9 7 21 21 O 1.21724 * 121.29146 * 0.02562 * 20 10 9 22 22 H 0.97005 * 120.00224 * 0.02562 * 1 2 3 23 23 H 1.09008 * 109.46970 * 59.99875 * 9 7 2 24 24 H 1.09004 * 109.47314 * 300.00612 * 9 7 2 25 25 H 1.08002 * 118.33771 * 0.02562 * 11 10 9 26 26 H 0.96696 * 113.99856 * 89.99462 * 15 14 13 27 27 H 1.08000 * 119.62450 * 180.02562 * 16 14 13 28 28 H 1.08000 * 119.67819 * 179.97438 * 17 16 14 29 29 H 1.07991 * 120.18792 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0022 11 6 4.2248 -3.2111 -1.1781 12 7 4.6618 -4.4309 -1.2593 13 6 4.9230 -5.1680 -0.1511 14 6 5.3951 -6.4843 -0.2384 15 8 5.6029 -7.0572 -1.4532 16 6 5.6478 -7.1962 0.9181 17 6 5.4387 -6.6224 2.1648 18 6 4.9755 -5.3297 2.2738 19 6 4.7136 -4.5920 1.1204 20 6 4.2183 -3.2085 1.1783 21 8 4.0165 -2.6531 2.2424 22 1 -0.4851 0.8401 -0.0004 23 1 3.8745 -0.6800 0.8912 24 1 3.8752 -0.6804 -0.8888 25 1 4.0350 -2.6726 -2.0948 26 1 6.4945 -6.9247 -1.8032 27 1 6.0121 -8.2107 0.8516 28 1 5.6416 -7.1950 3.0578 29 1 4.8157 -4.8904 3.2473 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260039917.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:09 Heat of formation + Delta-G solvation = -50.060067 kcal Electronic energy + Delta-G solvation = -17100.946169 eV Core-core repulsion = 14181.429344 eV Total energy + Delta-G solvation = -2919.516825 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.55010 -40.13345 -38.51838 -37.50444 -35.85573 -34.45709 -31.71045 -30.74006 -30.05288 -26.00887 -25.64123 -23.78381 -22.90364 -20.06651 -19.89503 -19.32047 -18.70254 -17.89296 -16.97311 -16.49223 -16.31552 -16.08001 -15.89907 -15.38412 -14.91305 -14.61675 -14.10007 -13.95750 -13.80166 -13.42257 -13.04905 -12.92341 -12.53851 -12.17356 -11.97513 -11.84578 -11.18295 -10.98573 -10.88649 -10.80809 -10.04474 -8.93817 -8.41151 -6.52564 -0.46753 -0.29049 1.10244 1.34600 1.37931 1.48172 1.61797 1.82950 2.27499 2.84451 2.92035 3.02853 3.10480 3.42860 3.84292 3.94524 4.06958 4.23828 4.45855 4.52915 4.63719 4.72521 5.03789 5.13383 5.23842 5.28226 5.35326 5.63636 5.74644 6.04700 6.49264 6.66239 6.78569 6.97068 7.12116 8.75501 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.038659 B = 0.006272 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.098878 B = 4463.048169 C = 4808.282182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.020 3.980 3 Si 0.953 3.047 4 H -0.243 1.243 5 H -0.283 1.283 6 H -0.249 1.249 7 C -0.554 4.554 8 H 0.024 0.976 9 C 0.204 3.796 10 N -0.529 5.529 11 C 0.383 3.617 12 N -0.538 5.538 13 C 0.108 3.892 14 C 0.104 3.896 15 O -0.487 6.487 16 C -0.090 4.090 17 C -0.111 4.111 18 C -0.067 4.067 19 C -0.210 4.210 20 C 0.526 3.474 21 O -0.552 6.552 22 H 0.273 0.727 23 H 0.043 0.957 24 H 0.087 0.913 25 H 0.232 0.768 26 H 0.408 0.592 27 H 0.177 0.823 28 H 0.176 0.824 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.881 -10.978 -1.517 19.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.180 4.180 3 Si 0.774 3.226 4 H -0.166 1.166 5 H -0.209 1.209 6 H -0.173 1.173 7 C -0.592 4.592 8 H 0.043 0.957 9 C 0.083 3.917 10 N -0.247 5.247 11 C 0.097 3.903 12 N -0.259 5.259 13 C -0.003 4.003 14 C 0.057 3.943 15 O -0.299 6.299 16 C -0.109 4.109 17 C -0.129 4.129 18 C -0.086 4.086 19 C -0.216 4.216 20 C 0.321 3.679 21 O -0.430 6.430 22 H 0.082 0.918 23 H 0.061 0.939 24 H 0.105 0.895 25 H 0.248 0.752 26 H 0.267 0.733 27 H 0.195 0.805 28 H 0.194 0.806 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 15.208 -11.198 -1.467 18.943 hybrid contribution -0.328 1.506 0.805 1.739 sum 14.879 -9.693 -0.661 17.770 Atomic orbital electron populations 1.70040 1.08508 1.28910 1.50224 1.25868 0.95680 1.03541 0.92915 0.85647 0.79161 0.77367 0.80433 1.16616 1.20890 1.17290 1.21262 0.90502 0.93628 1.53811 0.95735 1.20030 0.93965 0.77226 1.00449 1.46794 1.53942 1.16882 1.07115 1.25473 0.85592 0.89059 0.90156 1.68716 1.23074 1.04988 1.29142 1.19614 0.97901 0.95103 0.87723 1.18105 1.01283 0.87955 0.86941 1.84782 1.38609 1.75072 1.31478 1.21906 0.97113 1.01603 0.90263 1.21412 0.98952 0.93467 0.99118 1.21219 0.95563 0.94973 0.96866 1.20671 1.10186 0.94081 0.96640 1.18935 0.77979 0.87373 0.83644 1.90774 1.53228 1.69171 1.29864 0.91795 0.93941 0.89487 0.75232 0.73337 0.80540 0.80639 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.49 13.96 21.45 0.30 -57.19 15 2 C 0.02 1.11 5.47 84.66 0.46 1.57 15 3 Si 0.95 41.08 27.47 68.60 1.88 42.96 15 4 H -0.24 -9.36 7.11 99.48 0.71 -8.65 15 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 6 H -0.25 -10.13 6.54 99.48 0.65 -9.48 15 7 C -0.55 -31.38 9.94 25.60 0.25 -31.12 15 8 H 0.02 1.60 8.06 -2.91 -0.02 1.58 15 9 C 0.20 9.30 4.18 85.63 0.36 9.66 15 10 N -0.53 -22.40 2.59 -651.85 -1.69 -24.09 15 11 C 0.38 13.30 11.41 180.17 2.06 15.35 15 12 N -0.54 -18.53 10.18 -191.58 -1.95 -20.48 15 13 C 0.11 3.65 6.64 39.73 0.26 3.92 15 14 C 0.10 2.72 6.74 22.70 0.15 2.88 15 15 O -0.49 -11.13 13.32 -92.53 -1.23 -12.36 15 16 C -0.09 -1.74 9.95 22.39 0.22 -1.51 15 17 C -0.11 -2.25 10.01 22.30 0.22 -2.03 15 18 C -0.07 -1.98 9.67 22.44 0.22 -1.77 15 19 C -0.21 -7.78 5.89 -19.97 -0.12 -7.90 15 20 C 0.53 23.77 7.66 86.47 0.66 24.43 15 21 O -0.55 -28.56 16.32 -4.43 -0.07 -28.63 15 22 H 0.27 15.43 8.31 -92.70 -0.77 14.66 15 23 H 0.04 2.06 6.52 -2.38 -0.02 2.04 15 24 H 0.09 3.24 7.42 -2.38 -0.02 3.22 15 25 H 0.23 6.09 7.99 -2.91 -0.02 6.07 15 26 H 0.41 5.25 9.06 -74.06 -0.67 4.58 15 27 H 0.18 1.99 8.06 -2.91 -0.02 1.97 15 28 H 0.18 2.07 8.06 -2.91 -0.02 2.04 15 29 H 0.13 3.98 7.83 -2.91 -0.02 3.96 15 Total: -1.00 -78.39 263.47 2.47 -75.92 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.47 Total: 10.39 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 4.76 Total: 13.47 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -3.34 Total: -101.75 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -1.30 Total: -40.99 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.88 Total: 42.96 kcal Total: -78.39 2.47 -75.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260039917.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.858 kcal (2) G-P(sol) polarization free energy of solvation -78.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds