Wall clock time and date at job start Mon Mar 30 2020 03:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38912 * 119.58242 * 2 1 4 4 C 1.37745 * 120.58016 * 179.97438 * 3 2 1 5 5 C 1.39436 * 119.53916 * 359.97438 * 4 3 2 6 6 C 1.41337 * 120.02183 * 0.02562 * 5 4 3 7 7 C 1.37667 * 119.58821 * 179.97438 * 2 1 3 8 8 N 1.35515 * 119.12279 * 180.02562 * 6 5 4 9 9 C 1.30603 * 121.56157 * 0.02562 * 8 6 5 10 10 O 1.35059 * 118.44776 * 180.02562 * 9 8 6 11 11 N 1.36672 * 123.10236 * 0.02562 * 9 8 6 12 12 C 1.37220 * 119.74368 * 179.97438 * 11 9 8 13 13 H 1.07998 * 119.99415 * 319.24432 * 12 11 9 14 14 C 1.39024 * 120.00180 * 139.23685 * 12 11 9 15 15 N 1.31294 * 119.99456 * 156.58365 * 14 12 11 16 16 Si 1.86793 * 119.99982 * 336.58578 * 14 12 11 17 17 H 1.48496 * 109.47206 * 93.91654 * 16 14 12 18 18 H 1.48507 * 109.47102 * 213.91715 * 16 14 12 19 19 H 1.48503 * 109.47504 * 333.91439 * 16 14 12 20 20 C 1.35325 * 120.52040 * 0.20511 * 11 9 8 21 21 O 1.21725 * 121.22897 * 179.79809 * 20 11 9 22 22 H 1.08999 * 109.47111 * 90.00580 * 1 2 3 23 23 H 1.09005 * 109.46418 * 210.00450 * 1 2 3 24 24 H 1.08998 * 109.47118 * 329.99947 * 1 2 3 25 25 H 1.07998 * 119.70932 * 359.94808 * 3 2 1 26 26 H 1.08007 * 120.23113 * 179.97438 * 4 3 2 27 27 H 1.07999 * 120.14832 * 0.02562 * 7 2 1 28 28 H 0.96700 * 114.00110 * 355.24825 * 10 9 8 29 29 H 0.97007 * 119.99406 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.2080 0.0000 4 6 3.5700 1.2320 0.0005 5 6 4.2785 0.0311 0.0016 6 6 3.5838 -1.1998 0.0016 7 6 2.1868 -1.1971 0.0005 8 7 4.2906 -2.3560 0.0032 9 6 5.5966 -2.3589 0.0052 10 8 6.2373 -3.5478 0.0062 11 7 6.3455 -1.2156 0.0064 12 6 7.7152 -1.2990 0.0091 13 1 8.2098 -2.0389 0.6208 14 6 8.4660 -0.4312 -0.7758 15 7 9.7150 -0.1763 -0.4616 16 14 7.6977 0.3719 -2.2771 17 1 7.1588 1.7044 -1.9043 18 1 8.7282 0.5327 -3.3343 19 1 6.5954 -0.4831 -2.7864 20 6 5.7469 -0.0020 0.0097 21 8 6.4013 1.0244 0.0144 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3632 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6413 2.1366 -0.0009 26 1 4.0975 2.1745 0.0001 27 1 1.6425 -2.1300 0.0005 28 1 5.6489 -4.3117 0.0785 29 1 10.2388 0.4296 -1.0091 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260045245.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:24 Heat of formation + Delta-G solvation = -19.271823 kcal Electronic energy + Delta-G solvation = -17628.061841 eV Core-core repulsion = 14709.880095 eV Total energy + Delta-G solvation = -2918.181747 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.91532 -38.35062 -37.82339 -35.37880 -34.21043 -32.27306 -31.86487 -29.15660 -27.46799 -25.24696 -23.72376 -22.21324 -21.42787 -18.85105 -18.53626 -17.94940 -16.71436 -15.86690 -15.29021 -14.95398 -14.54946 -13.98581 -13.72368 -13.57360 -13.38559 -13.32590 -12.88963 -12.81027 -12.13429 -12.02586 -11.49550 -11.38510 -11.17075 -10.79841 -10.44346 -10.30993 -9.59001 -9.26138 -9.11476 -8.73634 -8.38079 -7.26612 -6.73428 -4.52301 1.30299 1.39296 2.87200 3.05880 3.16017 3.23399 3.33664 3.52639 4.13484 4.37822 4.56220 4.85117 4.95673 5.10413 5.22228 5.43588 5.53337 5.65297 5.66845 5.85419 5.95171 6.15193 6.44333 6.55738 6.80536 6.87716 7.04628 7.20610 7.37356 7.63283 8.00083 8.29115 8.59367 8.90089 9.02165 10.29063 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029978 B = 0.009233 C = 0.007673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.792362 B = 3031.724193 C = 3648.239878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.048 4.048 3 C -0.176 4.176 4 C -0.027 4.027 5 C -0.231 4.231 6 C 0.203 3.797 7 C -0.139 4.139 8 N -0.620 5.620 9 C 0.550 3.450 10 O -0.441 6.441 11 N -0.362 5.362 12 C -0.376 4.376 13 H 0.122 0.878 14 C 0.107 3.893 15 N -0.820 5.820 16 Si 0.890 3.110 17 H -0.243 1.243 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.509 3.491 21 O -0.500 6.500 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.120 0.880 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.413 0.587 29 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.470 -1.816 -0.480 13.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.050 4.050 3 C -0.195 4.195 4 C -0.047 4.047 5 C -0.239 4.239 6 C 0.087 3.913 7 C -0.159 4.159 8 N -0.366 5.366 9 C 0.252 3.748 10 O -0.234 6.234 11 N -0.076 5.076 12 C -0.501 4.501 13 H 0.140 0.860 14 C -0.109 4.109 15 N -0.449 5.449 16 Si 0.716 3.284 17 H -0.168 1.168 18 H -0.213 1.213 19 H -0.198 1.198 20 C 0.306 3.694 21 O -0.377 6.377 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.138 0.862 26 H 0.146 0.854 27 H 0.146 0.854 28 H 0.268 0.732 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.639 -1.482 -0.537 12.737 hybrid contribution -0.030 0.507 -0.635 0.813 sum -12.669 -0.975 -1.172 12.760 Atomic orbital electron populations 1.20798 0.91338 1.02559 1.02159 1.19816 0.95672 0.92804 0.96712 1.20736 0.93533 0.97197 1.08042 1.20882 0.93631 0.96840 0.93311 1.20556 0.92746 0.95490 1.15090 1.18312 0.93404 0.86629 0.92919 1.20390 0.91079 0.97615 1.06807 1.68449 1.02420 1.28731 1.37046 1.20311 0.84233 0.82570 0.87711 1.84860 1.37155 1.13322 1.88014 1.42184 1.08993 1.02909 1.53561 1.19262 0.76534 1.23608 1.30731 0.86032 1.25251 0.94814 0.93529 0.97310 1.69684 1.09254 1.30020 1.35958 0.86687 0.79378 0.82338 0.79971 1.16817 1.21334 1.19767 1.18348 0.87429 0.83100 0.80509 1.90735 1.66180 1.31312 1.49503 0.91222 0.91567 0.91633 0.86176 0.85362 0.85432 0.73188 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.99 36.01 0.36 -0.79 15 2 C -0.05 -0.71 5.88 -104.58 -0.61 -1.32 15 3 C -0.18 -2.72 9.66 -39.51 -0.38 -3.10 15 4 C -0.03 -0.52 9.67 -39.32 -0.38 -0.90 15 5 C -0.23 -5.13 5.89 -104.78 -0.62 -5.75 15 6 C 0.20 4.15 6.63 -84.51 -0.56 3.59 15 7 C -0.14 -2.31 9.65 -39.24 -0.38 -2.69 15 8 N -0.62 -12.68 10.22 -12.12 -0.12 -12.80 15 9 C 0.55 12.12 8.52 -88.78 -0.76 11.37 15 10 O -0.44 -8.17 12.62 -16.88 -0.21 -8.39 15 11 N -0.36 -9.31 2.34 -64.06 -0.15 -9.46 15 12 C -0.38 -10.49 9.07 -14.85 -0.13 -10.63 15 13 H 0.12 3.48 7.92 -52.49 -0.42 3.06 15 14 C 0.11 3.04 4.75 -17.49 -0.08 2.95 15 15 N -0.82 -23.47 13.95 55.50 0.77 -22.70 15 16 Si 0.89 22.98 25.08 -169.99 -4.26 18.71 15 17 H -0.24 -6.48 6.25 56.52 0.35 -6.12 15 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 15 19 H -0.27 -7.08 7.11 56.52 0.40 -6.68 15 20 C 0.51 13.13 5.91 -12.51 -0.07 13.06 15 21 O -0.50 -14.01 12.31 5.17 0.06 -13.94 15 22 H 0.07 0.64 8.14 -51.93 -0.42 0.22 15 23 H 0.07 0.60 8.07 -51.93 -0.42 0.19 15 24 H 0.06 0.58 8.08 -51.93 -0.42 0.16 15 25 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 26 H 0.13 2.37 7.82 -52.48 -0.41 1.96 15 27 H 0.13 1.84 8.06 -52.49 -0.42 1.42 15 28 H 0.41 5.05 8.92 45.56 0.41 5.46 15 29 H 0.28 7.52 8.31 -40.82 -0.34 7.18 15 LS Contribution 255.98 15.07 3.86 3.86 Total: -1.00 -32.18 255.98 -5.39 -37.57 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -1.71 Total: 1.33 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -3.62 Total: 5.81 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.50 Total: -44.95 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.15 Total: -22.33 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.26 Total: 18.71 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.18 -5.39 -37.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260045245.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.298 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds