Wall clock time and date at job start Mon Mar 30 2020 03:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38912 * 119.58242 * 2 1 4 4 C 1.37745 * 120.58016 * 179.97438 * 3 2 1 5 5 C 1.39436 * 119.53916 * 359.97438 * 4 3 2 6 6 C 1.41337 * 120.02183 * 0.02562 * 5 4 3 7 7 C 1.37667 * 119.58821 * 179.97438 * 2 1 3 8 8 N 1.35515 * 119.12279 * 180.02562 * 6 5 4 9 9 C 1.30603 * 121.56157 * 0.02562 * 8 6 5 10 10 O 1.35059 * 118.44776 * 180.02562 * 9 8 6 11 11 N 1.36672 * 123.10236 * 0.02562 * 9 8 6 12 12 C 1.37220 * 119.74368 * 179.97438 * 11 9 8 13 13 H 1.07998 * 119.99415 * 319.24432 * 12 11 9 14 14 C 1.39024 * 120.00180 * 139.23685 * 12 11 9 15 15 N 1.31294 * 119.99456 * 156.58365 * 14 12 11 16 16 Si 1.86793 * 119.99982 * 336.58578 * 14 12 11 17 17 H 1.48496 * 109.47206 * 93.91654 * 16 14 12 18 18 H 1.48507 * 109.47102 * 213.91715 * 16 14 12 19 19 H 1.48503 * 109.47504 * 333.91439 * 16 14 12 20 20 C 1.35325 * 120.52040 * 0.20511 * 11 9 8 21 21 O 1.21725 * 121.22897 * 179.79809 * 20 11 9 22 22 H 1.08999 * 109.47111 * 90.00580 * 1 2 3 23 23 H 1.09005 * 109.46418 * 210.00450 * 1 2 3 24 24 H 1.08998 * 109.47118 * 329.99947 * 1 2 3 25 25 H 1.07998 * 119.70932 * 359.94808 * 3 2 1 26 26 H 1.08007 * 120.23113 * 179.97438 * 4 3 2 27 27 H 1.07999 * 120.14832 * 0.02562 * 7 2 1 28 28 H 0.96700 * 114.00110 * 355.24825 * 10 9 8 29 29 H 0.97007 * 119.99406 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.2080 0.0000 4 6 3.5700 1.2320 0.0005 5 6 4.2785 0.0311 0.0016 6 6 3.5838 -1.1998 0.0016 7 6 2.1868 -1.1971 0.0005 8 7 4.2906 -2.3560 0.0032 9 6 5.5966 -2.3589 0.0052 10 8 6.2373 -3.5478 0.0062 11 7 6.3455 -1.2156 0.0064 12 6 7.7152 -1.2990 0.0091 13 1 8.2098 -2.0389 0.6208 14 6 8.4660 -0.4312 -0.7758 15 7 9.7150 -0.1763 -0.4616 16 14 7.6977 0.3719 -2.2771 17 1 7.1588 1.7044 -1.9043 18 1 8.7282 0.5327 -3.3343 19 1 6.5954 -0.4831 -2.7864 20 6 5.7469 -0.0020 0.0097 21 8 6.4013 1.0244 0.0144 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3632 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6413 2.1366 -0.0009 26 1 4.0975 2.1745 0.0001 27 1 1.6425 -2.1300 0.0005 28 1 5.6489 -4.3117 0.0785 29 1 10.2388 0.4296 -1.0091 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260045245.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:24 Heat of formation + Delta-G solvation = -44.621791 kcal Electronic energy + Delta-G solvation = -17629.161098 eV Core-core repulsion = 14709.880095 eV Total energy + Delta-G solvation = -2919.281004 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.64891 -39.82057 -39.56644 -37.06170 -35.95064 -34.24107 -33.22752 -30.62412 -28.92320 -26.98871 -25.35221 -23.80678 -22.89977 -20.58099 -20.32062 -19.65187 -18.37501 -17.62588 -16.96270 -16.71013 -16.20010 -15.60000 -15.34948 -15.16363 -14.97051 -14.77965 -14.55422 -14.40065 -13.48031 -13.35444 -13.07195 -12.92845 -12.62844 -12.37693 -12.35142 -11.93653 -11.36278 -11.11221 -10.97463 -10.70422 -9.77779 -8.88295 -8.79355 -6.64951 -0.22803 -0.11109 1.03727 1.14885 1.24544 1.26767 1.47343 1.86665 2.12095 2.55546 2.82200 3.11984 3.46524 3.62321 3.94923 4.07646 4.30928 4.43341 4.52884 4.80980 4.96576 5.07692 5.10986 5.21822 5.30080 5.39865 5.52335 5.60645 5.84064 5.91337 6.19595 6.41743 6.62950 7.10258 7.15916 8.24889 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029978 B = 0.009233 C = 0.007673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.792362 B = 3031.724193 C = 3648.239878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.032 4.032 3 C -0.150 4.150 4 C -0.050 4.050 5 C -0.257 4.257 6 C 0.175 3.825 7 C -0.134 4.134 8 N -0.597 5.597 9 C 0.554 3.446 10 O -0.441 6.441 11 N -0.386 5.386 12 C -0.391 4.391 13 H 0.100 0.900 14 C 0.073 3.927 15 N -0.859 5.859 16 Si 0.934 3.066 17 H -0.262 1.262 18 H -0.266 1.266 19 H -0.278 1.278 20 C 0.494 3.506 21 O -0.543 6.543 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.162 0.838 26 H 0.123 0.877 27 H 0.156 0.844 28 H 0.438 0.562 29 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.024 -2.040 -0.925 18.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.033 4.033 3 C -0.169 4.169 4 C -0.069 4.069 5 C -0.263 4.263 6 C 0.061 3.939 7 C -0.154 4.154 8 N -0.343 5.343 9 C 0.254 3.746 10 O -0.237 6.237 11 N -0.103 5.103 12 C -0.517 4.517 13 H 0.118 0.882 14 C -0.139 4.139 15 N -0.491 5.491 16 Si 0.760 3.240 17 H -0.187 1.187 18 H -0.192 1.192 19 H -0.204 1.204 20 C 0.293 3.707 21 O -0.423 6.423 22 H 0.107 0.893 23 H 0.101 0.899 24 H 0.105 0.895 25 H 0.179 0.821 26 H 0.141 0.859 27 H 0.174 0.826 28 H 0.298 0.702 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.251 -1.761 -0.986 17.369 hybrid contribution 0.945 0.526 -0.413 1.157 sum -16.307 -1.236 -1.399 16.413 Atomic orbital electron populations 1.20932 0.87200 1.04589 1.03937 1.20430 0.98418 0.91471 0.93016 1.21262 0.91973 0.99552 1.04098 1.21052 0.95363 0.95665 0.94855 1.20663 0.90797 0.97649 1.17210 1.18812 0.95089 0.85839 0.94140 1.20804 0.89262 0.99885 1.05404 1.68588 1.01218 1.28819 1.35700 1.20467 0.84485 0.82702 0.86948 1.84849 1.38096 1.13323 1.87450 1.42178 1.08362 1.04143 1.55622 1.19044 0.78027 1.23571 1.31065 0.88241 1.25747 0.95135 0.94077 0.98905 1.69723 1.10196 1.31865 1.37333 0.86012 0.78911 0.80538 0.78582 1.18741 1.19151 1.20357 1.19038 0.89076 0.82718 0.79863 1.90674 1.67281 1.32506 1.51861 0.89267 0.89869 0.89494 0.82058 0.85911 0.82644 0.70163 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 9.99 71.24 0.71 -0.76 15 2 C -0.03 -0.75 5.88 -19.84 -0.12 -0.86 15 3 C -0.15 -3.96 9.66 22.31 0.22 -3.74 15 4 C -0.05 -1.81 9.67 22.44 0.22 -1.60 15 5 C -0.26 -11.29 5.89 -19.96 -0.12 -11.41 15 6 C 0.17 6.80 6.63 39.69 0.26 7.06 15 7 C -0.13 -3.86 9.65 22.49 0.22 -3.64 15 8 N -0.60 -23.52 10.22 -306.28 -3.13 -26.65 15 9 C 0.55 24.47 8.52 179.71 1.53 26.00 15 10 O -0.44 -16.26 12.62 -83.32 -1.05 -17.31 15 11 N -0.39 -20.52 2.34 -585.35 -1.37 -21.89 15 12 C -0.39 -22.95 9.07 84.04 0.76 -22.19 15 13 H 0.10 6.06 7.92 -2.91 -0.02 6.04 15 14 C 0.07 4.35 4.75 84.96 0.40 4.75 15 15 N -0.86 -51.58 13.95 21.67 0.30 -51.28 15 16 Si 0.93 49.19 25.08 68.60 1.72 50.92 15 17 H -0.26 -14.40 6.25 99.48 0.62 -13.78 15 18 H -0.27 -12.77 7.11 99.48 0.71 -12.07 15 19 H -0.28 -14.62 7.11 99.48 0.71 -13.91 15 20 C 0.49 26.34 5.91 86.42 0.51 26.85 15 21 O -0.54 -31.86 12.31 -4.43 -0.05 -31.92 15 22 H 0.09 0.99 8.14 -2.39 -0.02 0.97 15 23 H 0.08 0.93 8.07 -2.38 -0.02 0.91 15 24 H 0.09 0.89 8.08 -2.39 -0.02 0.87 15 25 H 0.16 2.97 8.06 -2.91 -0.02 2.94 15 26 H 0.12 4.54 7.82 -2.91 -0.02 4.52 15 27 H 0.16 3.62 8.06 -2.91 -0.02 3.60 15 28 H 0.44 10.08 8.92 -74.06 -0.66 9.42 15 29 H 0.29 15.98 8.31 -92.70 -0.77 15.21 15 Total: -1.00 -74.42 255.98 1.47 -72.95 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: 0.45 Total: 4.72 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: 4.60 Total: 20.45 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -4.20 Total: -99.81 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -1.11 Total: -49.23 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 1.72 Total: 50.92 kcal Total: -74.42 1.47 -72.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260045245.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.329 kcal (2) G-P(sol) polarization free energy of solvation -74.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds