Wall clock time and date at job start Mon Mar 30 2020 04:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35721 * 117.00040 * 2 1 4 4 C 1.37951 * 120.29564 * 359.97438 * 3 2 1 5 5 C 1.38954 * 120.85000 * 179.97438 * 4 3 2 6 6 C 1.37875 * 120.91066 * 359.97438 * 5 4 3 7 7 C 1.39379 * 119.69645 * 0.02562 * 6 5 4 8 8 C 1.46328 * 122.06379 * 179.97438 * 7 6 5 9 9 O 1.35303 * 121.10512 * 359.97438 * 8 7 6 10 10 N 1.32018 * 117.78903 * 180.02562 * 8 7 6 11 11 C 1.34033 * 121.23982 * 359.97438 * 10 8 7 12 12 C 1.41163 * 118.39811 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00158 * 179.97438 * 12 11 10 14 14 C 1.40071 * 119.99782 * 0.02562 * 12 11 10 15 15 N 1.30700 * 119.99735 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00022 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47114 * 89.99817 * 16 14 12 18 18 H 1.48497 * 109.47009 * 210.00203 * 16 14 12 19 19 H 1.48500 * 109.47128 * 329.99776 * 16 14 12 20 20 N 1.32890 * 123.21221 * 359.97438 * 11 10 8 21 21 C 1.33197 * 120.93464 * 0.02562 * 20 11 10 22 22 H 1.09001 * 109.46974 * 300.00082 * 1 2 3 23 23 H 1.08998 * 109.46648 * 60.00248 * 1 2 3 24 24 H 1.08997 * 109.47086 * 180.02562 * 1 2 3 25 25 H 1.07997 * 119.57345 * 359.96016 * 4 3 2 26 26 H 1.08000 * 119.54370 * 180.02562 * 5 4 3 27 27 H 1.08004 * 120.14881 * 179.72299 * 6 5 4 28 28 H 0.96698 * 113.99848 * 90.00267 * 9 8 7 29 29 H 0.96995 * 119.99754 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2999 2.3701 -0.0005 5 6 1.9187 3.6142 0.0000 6 6 3.2933 3.7216 0.0016 7 6 4.0759 2.5683 0.0022 8 6 5.5382 2.6218 0.0033 9 8 6.1944 3.8051 0.0033 10 7 6.1961 1.4772 0.0032 11 6 5.5488 0.3035 0.0027 12 6 6.3120 -0.8841 0.0032 13 1 5.8172 -1.8440 0.0032 14 6 7.7112 -0.8173 0.0048 15 7 8.3100 0.3444 0.0053 16 14 8.7211 -2.3887 0.0062 17 1 8.9904 -2.8054 -1.3934 18 1 10.0079 -2.1494 0.7078 19 1 7.9680 -3.4606 0.7056 20 7 4.2237 0.2029 0.0027 21 6 3.4546 1.2904 0.0027 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 0.2215 2.3111 -0.0016 26 1 1.3146 4.5095 0.0000 27 1 3.7614 4.6949 -0.0025 28 1 6.3844 4.1494 0.8867 29 1 9.2788 0.3906 0.0061 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260045963.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:04 Heat of formation + Delta-G solvation = -8.969499 kcal Electronic energy + Delta-G solvation = -17201.644404 eV Core-core repulsion = 14283.909400 eV Total energy + Delta-G solvation = -2917.735004 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.83686 -38.31867 -36.51358 -35.79246 -33.61550 -31.51952 -29.82593 -28.94145 -27.14430 -26.08355 -22.93929 -22.36657 -20.88942 -18.94277 -17.60527 -17.39183 -16.41669 -15.54808 -15.29906 -15.14502 -15.08150 -14.23967 -13.93387 -13.33580 -12.91956 -12.81240 -12.09565 -11.65073 -11.56468 -11.38099 -11.18976 -11.14676 -10.80661 -10.66463 -10.47251 -10.41801 -9.46689 -9.19309 -9.07075 -8.12860 -7.59565 -6.96603 -6.76597 -4.80482 1.49080 1.99096 2.90216 2.96426 3.01254 3.03473 3.74422 3.84912 3.94898 4.50736 4.63056 5.33979 5.39262 5.48386 5.61765 5.67315 5.76160 5.82476 5.85112 6.04117 6.28441 6.52015 6.62210 6.85450 6.95174 7.13290 7.27331 7.50345 7.92560 8.05566 8.08542 8.32310 8.48389 8.86252 9.89071 10.05119 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.025723 B = 0.007882 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.270073 B = 3551.613922 C = 4622.192040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.295 6.295 3 C 0.091 3.909 4 C -0.180 4.180 5 C -0.177 4.177 6 C -0.069 4.069 7 C -0.245 4.245 8 C 0.369 3.631 9 O -0.478 6.478 10 N -0.476 5.476 11 C 0.395 3.605 12 C -0.367 4.367 13 H 0.103 0.897 14 C 0.059 3.941 15 N -0.698 5.698 16 Si 0.926 3.074 17 H -0.264 1.264 18 H -0.273 1.273 19 H -0.256 1.256 20 N -0.604 5.604 21 C 0.216 3.784 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.091 0.909 25 H 0.115 0.885 26 H 0.109 0.891 27 H 0.114 0.886 28 H 0.392 0.608 29 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.945 2.916 1.677 6.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.208 6.208 3 C 0.044 3.956 4 C -0.201 4.201 5 C -0.197 4.197 6 C -0.089 4.089 7 C -0.255 4.255 8 C 0.158 3.842 9 O -0.284 6.284 10 N -0.200 5.200 11 C 0.162 3.838 12 C -0.401 4.401 13 H 0.121 0.879 14 C -0.170 4.170 15 N -0.318 5.318 16 Si 0.748 3.252 17 H -0.189 1.189 18 H -0.198 1.198 19 H -0.179 1.179 20 N -0.328 5.328 21 C 0.079 3.921 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.110 0.890 25 H 0.133 0.867 26 H 0.127 0.873 27 H 0.132 0.868 28 H 0.249 0.751 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.054 1.754 1.074 5.457 hybrid contribution -0.232 0.669 0.430 0.828 sum -5.286 2.423 1.504 6.007 Atomic orbital electron populations 1.22930 0.80427 1.02913 1.00443 1.86156 1.19210 1.26701 1.88733 1.18627 0.90063 0.84054 1.02874 1.20808 0.98608 0.92211 1.08518 1.20332 0.94107 0.95869 1.09382 1.20643 0.93198 0.96652 0.98443 1.19885 0.93758 0.94449 1.17392 1.21044 0.85334 0.85958 0.91907 1.84570 1.77950 1.32843 1.33039 1.68941 1.39682 0.97277 1.14098 1.19628 0.85454 0.89617 0.89104 1.19622 0.90044 0.92846 1.37562 0.87909 1.26306 0.98735 0.98492 0.93494 1.70137 1.10998 1.25463 1.25173 0.86009 0.78673 0.80793 0.79684 1.18925 1.19757 1.17948 1.68897 1.05405 1.28884 1.29584 1.17965 0.90833 0.88754 0.94582 0.93488 0.93483 0.89043 0.86678 0.87314 0.86803 0.75116 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 15 2 O -0.30 -6.20 10.33 -18.87 -0.19 -6.39 15 3 C 0.09 2.01 6.75 -38.58 -0.26 1.75 15 4 C -0.18 -3.33 9.02 -39.42 -0.36 -3.68 15 5 C -0.18 -3.16 10.01 -39.45 -0.39 -3.56 15 6 C -0.07 -1.35 9.69 -39.29 -0.38 -1.73 15 7 C -0.24 -5.78 5.90 -104.74 -0.62 -6.39 15 8 C 0.37 8.97 8.07 -14.22 -0.11 8.86 15 9 O -0.48 -9.64 13.08 -17.60 -0.23 -9.87 15 10 N -0.48 -13.07 7.75 -11.16 -0.09 -13.16 15 11 C 0.40 11.25 7.34 -158.46 -1.16 10.08 15 12 C -0.37 -9.87 9.32 -37.78 -0.35 -10.22 15 13 H 0.10 2.66 7.85 -52.49 -0.41 2.24 15 14 C 0.06 1.43 5.50 -17.35 -0.10 1.33 15 15 N -0.70 -17.61 11.34 55.55 0.63 -16.98 15 16 Si 0.93 17.75 29.56 -169.99 -5.02 12.73 15 17 H -0.26 -5.01 7.11 56.52 0.40 -4.61 15 18 H -0.27 -5.04 7.11 56.52 0.40 -4.63 15 19 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 20 N -0.60 -16.97 10.10 -10.66 -0.11 -17.08 15 21 C 0.22 5.52 6.65 -84.69 -0.56 4.95 15 22 H 0.05 0.59 7.66 -51.93 -0.40 0.19 15 23 H 0.05 0.60 7.66 -51.93 -0.40 0.20 15 24 H 0.09 1.07 8.14 -51.93 -0.42 0.65 15 25 H 0.12 1.73 6.26 -52.49 -0.33 1.40 15 26 H 0.11 1.58 8.06 -52.49 -0.42 1.16 15 27 H 0.11 1.93 7.80 -52.48 -0.41 1.52 15 28 H 0.39 5.73 9.06 45.56 0.41 6.15 15 29 H 0.28 6.32 8.29 -40.82 -0.34 5.98 15 LS Contribution 262.32 15.07 3.95 3.95 Total: -1.00 -32.34 262.32 -5.88 -38.22 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -1.51 Total: 5.80 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -3.31 Total: 2.79 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.44 Total: -47.23 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.43 Total: -16.26 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.02 Total: 12.73 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.34 -5.88 -38.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260045963.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.250 kcal (2) G-P(sol) polarization free energy of solvation -32.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds