Wall clock time and date at job start Mon Mar 30 2020 04:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35721 * 117.00040 * 2 1 4 4 C 1.37951 * 120.29564 * 359.97438 * 3 2 1 5 5 C 1.38954 * 120.85000 * 179.97438 * 4 3 2 6 6 C 1.37875 * 120.91066 * 359.97438 * 5 4 3 7 7 C 1.39379 * 119.69645 * 0.02562 * 6 5 4 8 8 C 1.46328 * 122.06379 * 179.97438 * 7 6 5 9 9 O 1.35303 * 121.10512 * 359.97438 * 8 7 6 10 10 N 1.32018 * 117.78903 * 180.02562 * 8 7 6 11 11 C 1.34033 * 121.23982 * 359.97438 * 10 8 7 12 12 C 1.41163 * 118.39811 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00158 * 179.97438 * 12 11 10 14 14 C 1.40071 * 119.99782 * 0.02562 * 12 11 10 15 15 N 1.30700 * 119.99735 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00022 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47114 * 89.99817 * 16 14 12 18 18 H 1.48497 * 109.47009 * 210.00203 * 16 14 12 19 19 H 1.48500 * 109.47128 * 329.99776 * 16 14 12 20 20 N 1.32890 * 123.21221 * 359.97438 * 11 10 8 21 21 C 1.33197 * 120.93464 * 0.02562 * 20 11 10 22 22 H 1.09001 * 109.46974 * 300.00082 * 1 2 3 23 23 H 1.08998 * 109.46648 * 60.00248 * 1 2 3 24 24 H 1.08997 * 109.47086 * 180.02562 * 1 2 3 25 25 H 1.07997 * 119.57345 * 359.96016 * 4 3 2 26 26 H 1.08000 * 119.54370 * 180.02562 * 5 4 3 27 27 H 1.08004 * 120.14881 * 179.72299 * 6 5 4 28 28 H 0.96698 * 113.99848 * 90.00267 * 9 8 7 29 29 H 0.96995 * 119.99754 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2999 2.3701 -0.0005 5 6 1.9187 3.6142 0.0000 6 6 3.2933 3.7216 0.0016 7 6 4.0759 2.5683 0.0022 8 6 5.5382 2.6218 0.0033 9 8 6.1944 3.8051 0.0033 10 7 6.1961 1.4772 0.0032 11 6 5.5488 0.3035 0.0027 12 6 6.3120 -0.8841 0.0032 13 1 5.8172 -1.8440 0.0032 14 6 7.7112 -0.8173 0.0048 15 7 8.3100 0.3444 0.0053 16 14 8.7211 -2.3887 0.0062 17 1 8.9904 -2.8054 -1.3934 18 1 10.0079 -2.1494 0.7078 19 1 7.9680 -3.4606 0.7056 20 7 4.2237 0.2029 0.0027 21 6 3.4546 1.2904 0.0027 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 0.2215 2.3111 -0.0016 26 1 1.3146 4.5095 0.0000 27 1 3.7614 4.6949 -0.0025 28 1 6.3844 4.1494 0.8867 29 1 9.2788 0.3906 0.0061 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260045963.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:04 Heat of formation + Delta-G solvation = -34.747396 kcal Electronic energy + Delta-G solvation = -17202.762218 eV Core-core repulsion = 14283.909400 eV Total energy + Delta-G solvation = -2918.852818 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.54873 -39.91679 -38.22564 -37.41300 -35.40453 -33.33587 -31.54665 -30.58154 -28.62552 -27.65835 -24.66841 -24.13886 -22.51018 -20.67197 -19.30913 -19.05472 -18.15087 -17.22689 -16.83881 -16.76400 -16.54019 -15.87983 -15.48055 -14.97450 -14.55223 -14.43211 -13.48756 -13.22754 -13.18387 -13.05878 -12.83609 -12.66897 -12.50378 -12.06579 -11.97383 -11.91165 -11.19285 -11.02266 -10.87049 -9.81779 -9.49288 -8.64680 -8.56104 -6.72539 -0.21378 0.28105 1.24232 1.38291 1.44585 1.55419 2.16506 2.24566 2.43534 2.84546 2.89075 3.76512 3.79275 3.98705 4.14110 4.27453 4.40108 4.46102 4.49744 4.68063 4.74165 4.92616 4.95734 5.10483 5.39152 5.52438 5.67651 5.98691 6.00407 6.24143 6.44453 6.64285 6.81446 7.03061 8.07697 8.22474 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.025723 B = 0.007882 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.270073 B = 3551.613922 C = 4622.192040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.332 6.332 3 C 0.070 3.930 4 C -0.164 4.164 5 C -0.152 4.152 6 C -0.079 4.079 7 C -0.256 4.256 8 C 0.366 3.634 9 O -0.473 6.473 10 N -0.512 5.512 11 C 0.370 3.630 12 C -0.412 4.412 13 H 0.094 0.906 14 C 0.021 3.979 15 N -0.734 5.734 16 Si 1.006 2.994 17 H -0.259 1.259 18 H -0.257 1.257 19 H -0.255 1.255 20 N -0.642 5.642 21 C 0.167 3.833 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.111 0.889 25 H 0.159 0.841 26 H 0.160 0.840 27 H 0.144 0.856 28 H 0.416 0.584 29 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.737 4.454 1.799 9.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.023 3.977 4 C -0.185 4.185 5 C -0.171 4.171 6 C -0.099 4.099 7 C -0.266 4.266 8 C 0.155 3.845 9 O -0.282 6.282 10 N -0.236 5.236 11 C 0.135 3.865 12 C -0.446 4.446 13 H 0.112 0.888 14 C -0.204 4.204 15 N -0.355 5.355 16 Si 0.823 3.177 17 H -0.183 1.183 18 H -0.180 1.180 19 H -0.179 1.179 20 N -0.367 5.367 21 C 0.034 3.966 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.130 0.870 25 H 0.177 0.823 26 H 0.177 0.823 27 H 0.162 0.838 28 H 0.277 0.723 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.910 3.367 1.214 7.782 hybrid contribution -0.006 0.436 0.400 0.592 sum -6.916 3.804 1.614 8.056 Atomic orbital electron populations 1.23319 0.77013 1.05072 1.02164 1.86098 1.22807 1.26817 1.88851 1.18847 0.89261 0.85829 1.03771 1.21348 1.00656 0.91049 1.05464 1.20983 0.93747 0.97418 1.04938 1.21007 0.94061 0.96416 0.98398 1.20168 0.93738 0.95385 1.17315 1.21375 0.86246 0.86318 0.90517 1.84508 1.77609 1.31000 1.35116 1.68908 1.40423 0.97922 1.16389 1.20030 0.86081 0.90622 0.89793 1.19850 0.91719 0.92315 1.40684 0.88775 1.27219 0.98709 1.02228 0.92196 1.70183 1.11753 1.27678 1.25919 0.84865 0.77029 0.75848 0.79910 1.18295 1.18028 1.17891 1.68876 1.05640 1.30730 1.31437 1.18663 0.92668 0.89162 0.96151 0.91504 0.91622 0.87032 0.82344 0.82278 0.83828 0.72311 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.59 15 2 O -0.33 -13.83 10.33 -90.43 -0.93 -14.77 15 3 C 0.07 3.05 6.75 22.92 0.15 3.20 15 4 C -0.16 -5.41 9.02 22.37 0.20 -5.20 15 5 C -0.15 -4.65 10.01 22.36 0.22 -4.43 15 6 C -0.08 -2.84 9.69 22.46 0.22 -2.63 15 7 C -0.26 -12.13 5.90 -19.94 -0.12 -12.24 15 8 C 0.37 18.21 8.07 86.77 0.70 18.91 15 9 O -0.47 -18.87 13.08 -85.89 -1.12 -20.00 15 10 N -0.51 -29.50 7.75 -302.42 -2.34 -31.84 15 11 C 0.37 22.41 7.34 135.04 0.99 23.40 15 12 C -0.41 -23.62 9.32 23.43 0.22 -23.41 15 13 H 0.09 5.27 7.85 -2.91 -0.02 5.25 15 14 C 0.02 1.09 5.50 85.31 0.47 1.56 15 15 N -0.73 -38.59 11.34 21.84 0.25 -38.35 15 16 Si 1.01 37.48 29.56 68.60 2.03 39.51 15 17 H -0.26 -9.29 7.11 99.48 0.71 -8.58 15 18 H -0.26 -8.77 7.11 99.48 0.71 -8.06 15 19 H -0.26 -9.34 7.11 99.48 0.71 -8.64 15 20 N -0.64 -38.22 10.10 -187.65 -1.89 -40.11 15 21 C 0.17 8.77 6.65 40.61 0.27 9.04 15 22 H 0.07 1.44 7.66 -2.39 -0.02 1.42 15 23 H 0.07 1.43 7.66 -2.39 -0.02 1.41 15 24 H 0.11 2.36 8.14 -2.39 -0.02 2.34 15 25 H 0.16 3.81 6.26 -2.91 -0.02 3.80 15 26 H 0.16 3.40 8.06 -2.91 -0.02 3.37 15 27 H 0.14 4.29 7.80 -2.91 -0.02 4.26 15 28 H 0.42 11.77 9.06 -74.06 -0.67 11.10 15 29 H 0.29 13.43 8.29 -92.71 -0.77 12.66 15 Total: -1.00 -76.37 262.32 0.96 -75.41 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.54 Total: 20.34 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 4.44 Total: 9.81 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -3.99 Total: -110.30 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -2.06 Total: -34.77 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Total: -76.37 0.96 -75.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260045963.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.665 kcal (2) G-P(sol) polarization free energy of solvation -76.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds