Wall clock time and date at job start Mon Mar 30 2020 03:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32276 * 125.96184 * 2 1 4 4 C 1.32941 * 110.04743 * 179.74996 * 3 2 1 5 5 C 1.41803 * 131.76414 * 179.56996 * 4 3 2 6 6 C 1.47220 * 120.52069 * 0.68696 * 5 4 3 7 7 O 1.21543 * 120.00290 * 359.72341 * 6 5 4 8 8 O 1.34798 * 120.00237 * 179.72428 * 6 5 4 9 9 C 1.39268 * 118.95737 * 180.41580 * 5 4 3 10 10 C 1.39564 * 119.36489 * 0.27050 * 9 5 4 11 11 C 1.35601 * 120.35328 * 359.97438 * 10 9 5 12 12 N 1.35994 * 121.12510 * 0.02562 * 11 10 9 13 13 C 1.38614 * 132.31762 * 180.02562 * 12 11 10 14 14 C 1.39856 * 126.91676 * 359.97438 * 13 12 11 15 15 H 1.08009 * 120.00104 * 146.65893 * 14 13 12 16 16 C 1.39901 * 120.00334 * 326.65669 * 14 13 12 17 17 N 1.31013 * 119.99955 * 339.63837 * 16 14 13 18 18 Si 1.86801 * 120.00253 * 159.63541 * 16 14 13 19 19 H 1.48502 * 109.46812 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47075 * 120.00160 * 18 16 14 21 21 H 1.48498 * 109.47477 * 240.00525 * 18 16 14 22 22 H 1.08991 * 109.46743 * 264.72248 * 1 2 3 23 23 H 1.08998 * 109.46874 * 24.72521 * 1 2 3 24 24 H 1.09003 * 109.46573 * 144.72391 * 1 2 3 25 25 H 0.96700 * 117.00295 * 180.02562 * 8 6 5 26 26 H 1.08001 * 120.32107 * 180.30058 * 9 5 4 27 27 H 1.07995 * 119.81909 * 180.02562 * 10 9 5 28 28 H 1.07997 * 119.44120 * 180.02562 * 11 10 9 29 29 H 0.96997 * 120.00059 * 177.16411 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2839 1.0707 0.0000 4 6 3.5623 0.7061 0.0054 5 6 4.7606 1.4643 -0.0002 6 6 4.7144 2.9357 0.0005 7 8 3.6433 3.5102 0.0010 8 8 5.8601 3.6461 0.0008 9 6 5.9820 0.7950 -0.0007 10 6 5.9976 -0.6006 -0.0014 11 6 4.8352 -1.2989 -0.0010 12 7 3.6331 -0.6630 -0.0006 13 6 2.3289 -1.1326 0.0003 14 6 1.9174 -2.4692 0.0004 15 1 1.0120 -2.7555 0.5152 16 6 2.6783 -3.4355 -0.6662 17 7 3.5226 -3.0745 -1.6007 18 14 2.4908 -5.2407 -0.2238 19 1 1.4801 -5.3835 0.8548 20 1 2.0477 -6.0002 -1.4204 21 1 3.7950 -5.7735 0.2457 22 1 -0.3632 -0.0945 1.0232 23 1 -0.3633 0.9334 -0.4298 24 1 -0.3632 -0.8390 -0.5935 25 1 5.7792 4.6097 0.0016 26 1 6.9081 1.3505 -0.0001 27 1 6.9405 -1.1271 -0.0014 28 1 4.8645 -2.3785 -0.0012 29 1 4.0798 -3.7396 -2.0342 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260050102.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:47 Heat of formation + Delta-G solvation = -17.811526 kcal Electronic energy + Delta-G solvation = -17464.903814 eV Core-core repulsion = 14546.785390 eV Total energy + Delta-G solvation = -2918.118423 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.18608 -39.31747 -36.21039 -35.46961 -34.14742 -32.13338 -30.54542 -29.01088 -27.15140 -24.90223 -23.81271 -21.54941 -20.73762 -19.22494 -18.12770 -17.35995 -16.16144 -15.68669 -15.34154 -15.14983 -14.95136 -14.30964 -14.25290 -13.21452 -13.19085 -12.21386 -12.00717 -11.89707 -11.82603 -11.57823 -11.26688 -11.08261 -11.02351 -10.93710 -10.50445 -10.39327 -9.94324 -9.80539 -9.30106 -8.62106 -7.55762 -7.20594 -6.69537 -4.49019 1.16441 2.34844 2.87575 2.95241 3.01324 3.22782 3.40584 3.76384 3.89135 4.15798 4.67669 4.83269 5.28165 5.53842 5.56333 5.83776 6.04984 6.26420 6.47200 6.62208 6.67336 6.71354 6.81977 6.88436 6.92892 6.95905 7.07421 7.46418 7.64698 8.11272 8.27034 8.49421 8.51173 8.69062 9.38579 9.93535 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029665 B = 0.008369 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.654965 B = 3345.029934 C = 4166.562313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.071 4.071 3 N -0.447 5.447 4 C 0.152 3.848 5 C -0.098 4.098 6 C 0.526 3.474 7 O -0.491 6.491 8 O -0.524 6.524 9 C -0.053 4.053 10 C -0.232 4.232 11 C 0.178 3.822 12 N -0.381 5.381 13 C 0.182 3.818 14 C -0.447 4.447 15 H 0.101 0.899 16 C 0.068 3.932 17 N -0.813 5.813 18 Si 0.911 3.089 19 H -0.258 1.258 20 H -0.273 1.273 21 H -0.271 1.271 22 H 0.048 0.952 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.405 0.595 26 H 0.135 0.865 27 H 0.136 0.864 28 H 0.155 0.845 29 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.509 0.721 2.211 5.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.203 4.203 3 N -0.165 5.165 4 C -0.087 4.087 5 C -0.102 4.102 6 C 0.370 3.630 7 O -0.378 6.378 8 O -0.336 6.336 9 C -0.077 4.077 10 C -0.254 4.254 11 C 0.053 3.947 12 N -0.059 5.059 13 C 0.072 3.928 14 C -0.482 4.482 15 H 0.119 0.881 16 C -0.148 4.148 17 N -0.441 5.441 18 Si 0.735 3.265 19 H -0.181 1.181 20 H -0.198 1.198 21 H -0.196 1.196 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.262 0.738 26 H 0.152 0.848 27 H 0.154 0.846 28 H 0.173 0.827 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.973 1.194 2.012 5.496 hybrid contribution 0.496 -1.154 -0.118 1.262 sum 5.469 0.040 1.894 5.788 Atomic orbital electron populations 1.19660 0.88583 1.01024 1.00298 1.21131 0.95415 0.87603 1.16169 1.69800 0.98237 1.30484 1.17968 1.19351 0.92342 0.80666 1.16302 1.17689 0.91197 0.88025 1.13288 1.20539 0.80970 0.88274 0.73221 1.90928 1.30453 1.71652 1.44769 1.84580 1.36900 1.25064 1.87056 1.21321 0.96100 0.94150 0.96096 1.20363 0.97088 0.93907 1.14074 1.21914 0.83372 0.99133 0.90326 1.42755 1.05809 1.07194 1.50175 1.18657 0.78944 0.94738 1.00412 1.18504 1.10048 0.89133 1.30514 0.88115 1.25934 0.94352 1.02070 0.92469 1.69944 1.19977 1.37549 1.16663 0.86184 0.79510 0.81111 0.79689 1.18115 1.19805 1.19630 0.93315 0.92845 0.91956 0.73826 0.84765 0.84612 0.82739 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.80 10.21 36.01 0.37 -0.43 15 2 C -0.07 -1.84 7.21 -81.76 -0.59 -2.42 15 3 N -0.45 -12.22 10.37 -7.82 -0.08 -12.30 15 4 C 0.15 3.92 7.47 -155.36 -1.16 2.76 15 5 C -0.10 -2.16 5.92 -104.50 -0.62 -2.78 15 6 C 0.53 10.71 8.27 34.38 0.28 10.99 15 7 O -0.49 -11.60 16.77 -19.30 -0.32 -11.93 15 8 O -0.52 -7.75 12.71 -40.76 -0.52 -8.27 15 9 C -0.05 -0.98 9.70 -38.70 -0.38 -1.36 15 10 C -0.23 -4.22 9.97 -40.03 -0.40 -4.62 15 11 C 0.18 3.87 9.27 -16.65 -0.15 3.72 15 12 N -0.38 -9.61 2.90 -59.72 -0.17 -9.78 15 13 C 0.18 4.77 6.26 -83.56 -0.52 4.25 15 14 C -0.45 -11.01 8.95 -38.35 -0.34 -11.35 15 15 H 0.10 2.36 7.92 -52.48 -0.42 1.94 15 16 C 0.07 1.55 4.49 -17.28 -0.08 1.48 15 17 N -0.81 -19.36 10.63 55.55 0.59 -18.77 15 18 Si 0.91 17.10 29.61 -169.99 -5.03 12.06 15 19 H -0.26 -4.81 7.11 56.52 0.40 -4.41 15 20 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 21 H -0.27 -4.95 7.11 56.52 0.40 -4.55 15 22 H 0.05 0.94 8.14 -51.93 -0.42 0.51 15 23 H 0.05 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.06 1.25 8.09 -51.93 -0.42 0.83 15 25 H 0.40 3.90 9.11 45.56 0.42 4.32 15 26 H 0.13 1.99 7.64 -52.49 -0.40 1.59 15 27 H 0.14 1.93 8.06 -52.49 -0.42 1.51 15 28 H 0.16 3.27 5.99 -52.49 -0.31 2.96 15 29 H 0.28 6.13 8.30 -40.82 -0.34 5.79 15 LS Contribution 263.40 15.07 3.97 3.97 Total: -1.00 -31.68 263.40 -6.70 -38.38 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -1.54 Total: 6.40 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -3.59 Total: 0.23 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.34 Total: -40.85 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.84 Total: -20.19 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.68 -6.70 -38.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260050102.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.568 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds