Wall clock time and date at job start Mon Mar 30 2020 03:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32276 * 125.96184 * 2 1 4 4 C 1.32941 * 110.04743 * 179.74996 * 3 2 1 5 5 C 1.41803 * 131.76414 * 179.56996 * 4 3 2 6 6 C 1.47220 * 120.52069 * 0.68696 * 5 4 3 7 7 O 1.21543 * 120.00290 * 359.72341 * 6 5 4 8 8 O 1.34798 * 120.00237 * 179.72428 * 6 5 4 9 9 C 1.39268 * 118.95737 * 180.41580 * 5 4 3 10 10 C 1.39564 * 119.36489 * 0.27050 * 9 5 4 11 11 C 1.35601 * 120.35328 * 359.97438 * 10 9 5 12 12 N 1.35994 * 121.12510 * 0.02562 * 11 10 9 13 13 C 1.38614 * 132.31762 * 180.02562 * 12 11 10 14 14 C 1.39856 * 126.91676 * 359.97438 * 13 12 11 15 15 H 1.08009 * 120.00104 * 146.65893 * 14 13 12 16 16 C 1.39901 * 120.00334 * 326.65669 * 14 13 12 17 17 N 1.31013 * 119.99955 * 339.63837 * 16 14 13 18 18 Si 1.86801 * 120.00253 * 159.63541 * 16 14 13 19 19 H 1.48502 * 109.46812 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47075 * 120.00160 * 18 16 14 21 21 H 1.48498 * 109.47477 * 240.00525 * 18 16 14 22 22 H 1.08991 * 109.46743 * 264.72248 * 1 2 3 23 23 H 1.08998 * 109.46874 * 24.72521 * 1 2 3 24 24 H 1.09003 * 109.46573 * 144.72391 * 1 2 3 25 25 H 0.96700 * 117.00295 * 180.02562 * 8 6 5 26 26 H 1.08001 * 120.32107 * 180.30058 * 9 5 4 27 27 H 1.07995 * 119.81909 * 180.02562 * 10 9 5 28 28 H 1.07997 * 119.44120 * 180.02562 * 11 10 9 29 29 H 0.96997 * 120.00059 * 177.16411 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2839 1.0707 0.0000 4 6 3.5623 0.7061 0.0054 5 6 4.7606 1.4643 -0.0002 6 6 4.7144 2.9357 0.0005 7 8 3.6433 3.5102 0.0010 8 8 5.8601 3.6461 0.0008 9 6 5.9820 0.7950 -0.0007 10 6 5.9976 -0.6006 -0.0014 11 6 4.8352 -1.2989 -0.0010 12 7 3.6331 -0.6630 -0.0006 13 6 2.3289 -1.1326 0.0003 14 6 1.9174 -2.4692 0.0004 15 1 1.0120 -2.7555 0.5152 16 6 2.6783 -3.4355 -0.6662 17 7 3.5226 -3.0745 -1.6007 18 14 2.4908 -5.2407 -0.2238 19 1 1.4801 -5.3835 0.8548 20 1 2.0477 -6.0002 -1.4204 21 1 3.7950 -5.7735 0.2457 22 1 -0.3632 -0.0945 1.0232 23 1 -0.3633 0.9334 -0.4298 24 1 -0.3632 -0.8390 -0.5935 25 1 5.7792 4.6097 0.0016 26 1 6.9081 1.3505 -0.0001 27 1 6.9405 -1.1271 -0.0014 28 1 4.8645 -2.3785 -0.0012 29 1 4.0798 -3.7396 -2.0342 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260050102.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:46 Heat of formation + Delta-G solvation = -38.622928 kcal Electronic energy + Delta-G solvation = -17465.806264 eV Core-core repulsion = 14546.785390 eV Total energy + Delta-G solvation = -2919.020873 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.94590 -40.82188 -37.88046 -36.89466 -35.90550 -33.84644 -32.25773 -30.74289 -28.87875 -26.61604 -25.44649 -23.26934 -22.31066 -21.01200 -19.77928 -18.90137 -17.75420 -17.36760 -17.03222 -16.76514 -16.53307 -15.97628 -15.89439 -14.82176 -14.68517 -13.88692 -13.62599 -13.58806 -13.46226 -13.14433 -12.95365 -12.67628 -12.54521 -12.48488 -12.06524 -12.01302 -11.59459 -11.49285 -10.99721 -10.48538 -9.31329 -8.95030 -8.46867 -6.31616 -0.45436 0.70759 1.39203 1.42298 1.56998 1.62874 1.90766 2.17828 2.20664 2.52378 2.94571 3.02406 3.65562 3.98208 4.08431 4.24401 4.47178 4.70355 4.78843 4.96854 5.06288 5.11987 5.16309 5.24180 5.31119 5.36092 5.67099 5.72476 5.92471 6.30201 6.47928 6.71999 6.91393 7.13955 7.54860 8.24939 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029665 B = 0.008369 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.654965 B = 3345.029934 C = 4166.562313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 C -0.112 4.112 3 N -0.491 5.491 4 C 0.134 3.866 5 C -0.143 4.143 6 C 0.536 3.464 7 O -0.537 6.537 8 O -0.498 6.498 9 C -0.013 4.013 10 C -0.210 4.210 11 C 0.147 3.853 12 N -0.389 5.389 13 C 0.150 3.850 14 C -0.476 4.476 15 H 0.100 0.900 16 C 0.038 3.962 17 N -0.841 5.841 18 Si 0.985 3.015 19 H -0.259 1.259 20 H -0.271 1.271 21 H -0.257 1.257 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.430 0.570 26 H 0.184 0.816 27 H 0.189 0.811 28 H 0.156 0.844 29 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.384 -0.190 2.400 8.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.242 4.242 3 N -0.210 5.210 4 C -0.106 4.106 5 C -0.147 4.147 6 C 0.382 3.618 7 O -0.428 6.428 8 O -0.313 6.313 9 C -0.036 4.036 10 C -0.232 4.232 11 C 0.022 3.978 12 N -0.067 5.067 13 C 0.041 3.959 14 C -0.510 4.510 15 H 0.118 0.882 16 C -0.176 4.176 17 N -0.470 5.470 18 Si 0.806 3.194 19 H -0.182 1.182 20 H -0.197 1.197 21 H -0.181 1.181 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.292 0.708 26 H 0.201 0.799 27 H 0.206 0.794 28 H 0.173 0.827 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.874 0.300 2.201 8.181 hybrid contribution -0.136 -0.787 -0.198 0.823 sum 7.738 -0.487 2.003 8.008 Atomic orbital electron populations 1.19656 0.86589 1.01236 1.01245 1.21797 0.97163 0.87758 1.17518 1.69756 0.99504 1.31427 1.20344 1.20081 0.93204 0.81561 1.15766 1.18078 0.91270 0.89351 1.16034 1.20299 0.81383 0.87984 0.72174 1.90913 1.32404 1.72370 1.47130 1.84479 1.33713 1.27135 1.85926 1.21951 0.96406 0.94387 0.90814 1.21045 0.97746 0.94072 1.10311 1.22362 0.83525 0.99808 0.92060 1.42907 1.06510 1.07200 1.50080 1.19032 0.79806 0.95452 1.01648 1.18697 1.11054 0.89395 1.31854 0.88195 1.26696 0.93424 1.05917 0.91536 1.69978 1.20534 1.39342 1.17111 0.85089 0.79866 0.75344 0.79127 1.18233 1.19657 1.18144 0.91948 0.92652 0.91480 0.70826 0.79910 0.79426 0.82672 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.32 10.21 71.24 0.73 -0.59 15 2 C -0.11 -6.10 7.21 42.91 0.31 -5.79 15 3 N -0.49 -28.15 10.37 -178.66 -1.85 -30.00 15 4 C 0.13 7.07 7.47 134.21 1.00 8.08 15 5 C -0.14 -6.14 5.92 -19.79 -0.12 -6.26 15 6 C 0.54 21.19 8.27 70.18 0.58 21.77 15 7 O -0.54 -25.76 16.77 19.70 0.33 -25.43 15 8 O -0.50 -12.99 12.71 -57.10 -0.73 -13.72 15 9 C -0.01 -0.42 9.70 22.84 0.22 -0.20 15 10 C -0.21 -6.79 9.97 21.98 0.22 -6.57 15 11 C 0.15 6.22 9.27 83.44 0.77 7.00 15 12 N -0.39 -19.96 2.90 -342.87 -0.99 -20.95 15 13 C 0.15 8.19 6.26 38.87 0.24 8.43 15 14 C -0.48 -24.10 8.95 23.06 0.21 -23.90 15 15 H 0.10 4.86 7.92 -2.91 -0.02 4.84 15 16 C 0.04 1.74 4.49 85.22 0.38 2.12 15 17 N -0.84 -39.93 10.63 21.83 0.23 -39.70 15 18 Si 0.99 34.53 29.61 68.60 2.03 36.56 15 19 H -0.26 -9.02 7.11 99.48 0.71 -8.32 15 20 H -0.27 -9.40 7.11 99.48 0.71 -8.69 15 21 H -0.26 -8.37 7.11 99.48 0.71 -7.67 15 22 H 0.06 2.52 8.14 -2.39 -0.02 2.50 15 23 H 0.05 2.36 8.14 -2.39 -0.02 2.34 15 24 H 0.07 2.83 8.09 -2.39 -0.02 2.81 15 25 H 0.43 6.80 9.11 -74.06 -0.67 6.12 15 26 H 0.18 4.18 7.64 -2.91 -0.02 4.16 15 27 H 0.19 4.12 8.06 -2.91 -0.02 4.09 15 28 H 0.16 6.42 5.99 -2.91 -0.02 6.40 15 29 H 0.29 12.40 8.30 -92.71 -0.77 11.64 15 Total: -1.00 -73.03 263.40 4.10 -68.93 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.53 Total: 20.22 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 4.55 Total: 4.09 kcal Atomic # 7 Polarization: -88.03 SS G_CDS: -2.61 Total: -90.65 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -0.40 Total: -39.15 kcal Atomic # 14 Polarization: 34.53 SS G_CDS: 2.03 Total: 36.56 kcal Total: -73.03 4.10 -68.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260050102.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.311 kcal (2) G-P(sol) polarization free energy of solvation -73.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds