Wall clock time and date at job start Mon Mar 30 2020 04:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31534 * 120.16918 * 2 1 4 4 C 1.33030 * 122.45471 * 179.97438 * 3 2 1 5 5 C 1.41332 * 119.77939 * 179.97438 * 4 3 2 6 6 N 1.39554 * 120.78633 * 0.02562 * 5 4 3 7 7 C 1.38296 * 118.42520 * 180.02562 * 5 4 3 8 8 N 1.33229 * 120.14565 * 359.97438 * 7 5 4 9 9 C 1.30546 * 121.82923 * 0.02562 * 8 7 5 10 10 N 1.35926 * 121.50215 * 0.02562 * 9 8 7 11 11 C 1.35045 * 120.00625 * 180.28074 * 10 9 8 12 12 O 1.21779 * 121.01263 * 359.97398 * 11 10 9 13 13 C 1.41150 * 120.16716 * 179.97438 * 2 1 3 14 14 C 1.40431 * 121.10763 * 359.97438 * 13 2 1 15 15 H 1.07998 * 120.00315 * 326.52636 * 14 13 2 16 16 C 1.39881 * 120.00339 * 146.52148 * 14 13 2 17 17 N 1.30970 * 120.00507 * 149.92499 * 16 14 13 18 18 Si 1.86806 * 119.99704 * 329.93118 * 16 14 13 19 19 H 1.48503 * 109.46929 * 264.85673 * 18 16 14 20 20 H 1.48502 * 109.47101 * 24.85337 * 18 16 14 21 21 H 1.48498 * 109.47287 * 144.85808 * 18 16 14 22 22 H 1.09001 * 109.47118 * 270.02152 * 1 2 3 23 23 H 1.09003 * 109.47284 * 30.02123 * 1 2 3 24 24 H 1.08998 * 109.47359 * 150.02335 * 1 2 3 25 25 H 0.96997 * 119.99499 * 359.97438 * 6 5 4 26 26 H 0.96996 * 119.99651 * 180.02562 * 6 5 4 27 27 H 1.08006 * 119.92434 * 180.02562 * 7 5 4 28 28 H 1.07992 * 119.24646 * 180.02562 * 9 8 7 29 29 H 0.96996 * 120.00081 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1680 1.1372 0.0000 4 6 3.4973 1.1902 0.0005 5 6 4.1497 2.4439 -0.0001 6 7 3.4160 3.6310 -0.0006 7 6 5.5325 2.4664 -0.0001 8 7 6.2202 1.3253 0.0010 9 6 5.6257 0.1631 0.0015 10 7 4.2704 0.0586 0.0005 11 6 3.6869 -1.1592 0.0069 12 8 4.3571 -2.1760 0.0131 13 6 2.2163 -1.2203 0.0005 14 6 1.5414 -2.4518 0.0016 15 1 0.5979 -2.5501 0.5179 16 6 2.0910 -3.5513 -0.6661 17 7 1.8561 -4.7649 -0.2332 18 14 3.1603 -3.2885 -2.1751 19 1 2.3286 -3.4142 -3.3990 20 1 3.7640 -1.9328 -2.1240 21 1 4.2380 -4.3098 -2.2021 22 1 -0.3633 0.0004 1.0277 23 1 -0.3634 0.8898 -0.5142 24 1 -0.3634 -0.8902 -0.5135 25 1 2.4465 3.6018 -0.0010 26 1 3.8756 4.4852 -0.0014 27 1 6.0560 3.4111 -0.0001 28 1 6.2242 -0.7357 0.0028 29 1 2.2369 -5.5272 -0.6965 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260054325.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:25 Heat of formation + Delta-G solvation = 39.441860 kcal Electronic energy + Delta-G solvation = -17789.103359 eV Core-core repulsion = 14905.760380 eV Total energy + Delta-G solvation = -2883.342979 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.14884 -37.94090 -36.55041 -34.89421 -34.35785 -32.85063 -30.74302 -28.91995 -27.56032 -26.04263 -23.07629 -22.71383 -21.33938 -19.07489 -17.84902 -17.63752 -16.94350 -15.97667 -15.55356 -15.26583 -15.03715 -14.39075 -13.83275 -13.30774 -13.08692 -12.90009 -12.71814 -12.25302 -11.74770 -11.72859 -11.28400 -11.25156 -11.15782 -10.92081 -10.08954 -9.81049 -9.71248 -9.20599 -9.02518 -8.69066 -7.87403 -7.57445 -6.69179 -4.51814 1.24348 1.71860 2.80803 3.02292 3.10757 3.29029 3.50192 3.61548 3.91203 4.22922 4.30527 4.98815 5.04499 5.24208 5.38594 5.70481 6.12112 6.14354 6.29285 6.41873 6.48593 6.56338 6.68607 6.85136 7.05586 7.38406 7.49264 7.58699 7.65388 7.94764 8.04192 8.09729 8.70686 8.95860 9.15112 9.30043 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.027563 B = 0.010284 C = 0.008162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.607544 B = 2722.129968 C = 3429.603950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.049 4.049 3 N -0.432 5.432 4 C 0.119 3.881 5 C 0.255 3.745 6 N -0.848 5.848 7 C -0.137 4.137 8 N -0.455 5.455 9 C 0.243 3.757 10 N -0.447 5.447 11 C 0.500 3.500 12 O -0.550 6.550 13 C -0.048 4.048 14 C -0.313 4.313 15 H 0.117 0.883 16 C 0.083 3.917 17 N -0.730 5.730 18 Si 0.962 3.038 19 H -0.285 1.285 20 H -0.258 1.258 21 H -0.270 1.270 22 H 0.047 0.953 23 H 0.051 0.949 24 H 0.066 0.934 25 H 0.407 0.593 26 H 0.397 0.603 27 H 0.141 0.859 28 H 0.190 0.810 29 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 6.764 -1.708 7.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.186 4.186 3 N -0.148 5.148 4 C -0.117 4.117 5 C 0.143 3.857 6 N -0.386 5.386 7 C -0.280 4.280 8 N -0.169 5.169 9 C -0.041 4.041 10 N -0.166 5.166 11 C 0.298 3.702 12 O -0.432 6.432 13 C -0.058 4.058 14 C -0.340 4.340 15 H 0.135 0.865 16 C -0.148 4.148 17 N -0.348 5.348 18 Si 0.787 3.213 19 H -0.213 1.213 20 H -0.182 1.182 21 H -0.194 1.194 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.085 0.915 25 H 0.237 0.763 26 H 0.226 0.774 27 H 0.159 0.841 28 H 0.206 0.794 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.050 6.849 -1.646 7.044 hybrid contribution -0.128 -0.488 -0.311 0.592 sum -0.078 6.361 -1.957 6.656 Atomic orbital electron populations 1.20077 0.89732 1.01314 1.00425 1.20434 0.95256 0.86047 1.16825 1.66821 1.03960 1.30851 1.13180 1.18077 0.86834 0.84960 1.21839 1.18040 0.91187 0.84796 0.91677 1.42134 1.09577 1.04194 1.82698 1.21153 0.88114 0.95918 1.22809 1.67542 1.37768 0.97069 1.14536 1.24213 0.81375 0.97186 1.01359 1.43637 1.07581 1.08095 1.57301 1.18949 0.89897 0.81411 0.79926 1.90530 1.65905 1.32748 1.54038 1.20442 0.89381 0.95470 1.00476 1.19675 1.05059 0.90550 1.18720 0.86527 1.26719 0.93994 0.93919 1.00173 1.69765 1.30433 1.00656 1.33972 0.85475 0.78068 0.81302 0.76405 1.21323 1.18195 1.19434 0.93400 0.93017 0.91516 0.76307 0.77441 0.84126 0.79358 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 9.66 36.00 0.35 -0.72 15 2 C -0.05 -1.10 6.89 -81.62 -0.56 -1.67 15 3 N -0.43 -9.58 9.39 -7.78 -0.07 -9.65 15 4 C 0.12 2.68 7.36 -155.51 -1.14 1.54 15 5 C 0.25 4.87 6.84 -83.15 -0.57 4.30 15 6 N -0.85 -12.22 9.07 32.75 0.30 -11.93 15 7 C -0.14 -2.58 11.12 -16.92 -0.19 -2.77 15 8 N -0.46 -9.38 10.36 -13.77 -0.14 -9.52 15 9 C 0.24 5.29 11.33 -89.53 -1.01 4.28 15 10 N -0.45 -10.60 2.76 -64.12 -0.18 -10.78 15 11 C 0.50 12.65 5.54 -12.50 -0.07 12.58 15 12 O -0.55 -14.43 12.26 5.12 0.06 -14.37 15 13 C -0.05 -1.17 5.02 -104.33 -0.52 -1.69 15 14 C -0.31 -7.54 8.32 -38.14 -0.32 -7.85 15 15 H 0.12 2.72 7.46 -52.49 -0.39 2.33 15 16 C 0.08 1.97 4.81 -17.30 -0.08 1.89 15 17 N -0.73 -17.17 13.94 55.55 0.77 -16.40 15 18 Si 0.96 21.48 25.36 -169.99 -4.31 17.17 15 19 H -0.29 -5.95 7.11 56.52 0.40 -5.55 15 20 H -0.26 -6.30 5.36 56.52 0.30 -6.00 15 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 22 H 0.05 0.83 8.14 -51.93 -0.42 0.40 15 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.07 1.19 7.00 -51.93 -0.36 0.83 15 25 H 0.41 5.80 8.20 -40.82 -0.33 5.46 15 26 H 0.40 4.31 8.86 -40.82 -0.36 3.95 15 27 H 0.14 2.21 8.06 -52.48 -0.42 1.79 15 28 H 0.19 3.83 7.36 -52.49 -0.39 3.45 15 29 H 0.30 6.36 8.30 -40.82 -0.34 6.02 15 LS Contribution 251.11 15.07 3.78 3.78 Total: -1.00 -27.96 251.11 -6.25 -34.20 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -2.34 Total: 7.59 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: -4.12 Total: 9.88 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.68 Total: -58.27 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.06 Total: -14.37 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.31 Total: 17.17 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.96 -6.25 -34.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260054325.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.646 kcal (2) G-P(sol) polarization free energy of solvation -27.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds