Wall clock time and date at job start Mon Mar 30 2020 04:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31534 * 120.16918 * 2 1 4 4 C 1.33030 * 122.45471 * 179.97438 * 3 2 1 5 5 C 1.41332 * 119.77939 * 179.97438 * 4 3 2 6 6 N 1.39554 * 120.78633 * 0.02562 * 5 4 3 7 7 C 1.38296 * 118.42520 * 180.02562 * 5 4 3 8 8 N 1.33229 * 120.14565 * 359.97438 * 7 5 4 9 9 C 1.30546 * 121.82923 * 0.02562 * 8 7 5 10 10 N 1.35926 * 121.50215 * 0.02562 * 9 8 7 11 11 C 1.35045 * 120.00625 * 180.28074 * 10 9 8 12 12 O 1.21779 * 121.01263 * 359.97398 * 11 10 9 13 13 C 1.41150 * 120.16716 * 179.97438 * 2 1 3 14 14 C 1.40431 * 121.10763 * 359.97438 * 13 2 1 15 15 H 1.07998 * 120.00315 * 326.52636 * 14 13 2 16 16 C 1.39881 * 120.00339 * 146.52148 * 14 13 2 17 17 N 1.30970 * 120.00507 * 149.92499 * 16 14 13 18 18 Si 1.86806 * 119.99704 * 329.93118 * 16 14 13 19 19 H 1.48503 * 109.46929 * 264.85673 * 18 16 14 20 20 H 1.48502 * 109.47101 * 24.85337 * 18 16 14 21 21 H 1.48498 * 109.47287 * 144.85808 * 18 16 14 22 22 H 1.09001 * 109.47118 * 270.02152 * 1 2 3 23 23 H 1.09003 * 109.47284 * 30.02123 * 1 2 3 24 24 H 1.08998 * 109.47359 * 150.02335 * 1 2 3 25 25 H 0.96997 * 119.99499 * 359.97438 * 6 5 4 26 26 H 0.96996 * 119.99651 * 180.02562 * 6 5 4 27 27 H 1.08006 * 119.92434 * 180.02562 * 7 5 4 28 28 H 1.07992 * 119.24646 * 180.02562 * 9 8 7 29 29 H 0.96996 * 120.00081 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1680 1.1372 0.0000 4 6 3.4973 1.1902 0.0005 5 6 4.1497 2.4439 -0.0001 6 7 3.4160 3.6310 -0.0006 7 6 5.5325 2.4664 -0.0001 8 7 6.2202 1.3253 0.0010 9 6 5.6257 0.1631 0.0015 10 7 4.2704 0.0586 0.0005 11 6 3.6869 -1.1592 0.0069 12 8 4.3571 -2.1760 0.0131 13 6 2.2163 -1.2203 0.0005 14 6 1.5414 -2.4518 0.0016 15 1 0.5979 -2.5501 0.5179 16 6 2.0910 -3.5513 -0.6661 17 7 1.8561 -4.7649 -0.2332 18 14 3.1603 -3.2885 -2.1751 19 1 2.3286 -3.4142 -3.3990 20 1 3.7640 -1.9328 -2.1240 21 1 4.2380 -4.3098 -2.2021 22 1 -0.3633 0.0004 1.0277 23 1 -0.3634 0.8898 -0.5142 24 1 -0.3634 -0.8902 -0.5135 25 1 2.4465 3.6018 -0.0010 26 1 3.8756 4.4852 -0.0014 27 1 6.0560 3.4111 -0.0001 28 1 6.2242 -0.7357 0.0028 29 1 2.2369 -5.5272 -0.6965 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260054325.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:25 Heat of formation + Delta-G solvation = 20.821612 kcal Electronic energy + Delta-G solvation = -17789.910794 eV Core-core repulsion = 14905.760380 eV Total energy + Delta-G solvation = -2884.150414 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.93295 -39.67295 -38.31290 -36.47720 -36.03734 -34.56968 -32.45970 -30.52550 -29.11837 -27.78373 -24.79952 -24.37484 -23.10820 -20.81913 -19.52095 -19.27457 -18.68136 -17.70359 -17.21957 -16.77122 -16.73519 -16.09668 -15.46213 -15.08148 -14.81464 -14.58858 -14.31537 -13.94857 -13.42187 -13.36186 -12.96138 -12.83302 -12.74230 -12.55804 -11.88304 -11.54305 -11.40378 -10.95232 -10.81622 -10.44885 -9.57769 -9.30592 -8.23890 -6.27980 -0.48942 -0.03830 1.04079 1.24158 1.32343 1.47550 1.73792 1.88448 2.18887 2.55161 2.87604 3.23872 3.32958 3.60889 3.68580 4.05731 4.49432 4.60843 4.61431 4.85931 4.97795 5.04173 5.11897 5.27909 5.39489 5.64207 5.80419 5.87927 6.09040 6.29385 6.37975 6.93292 6.96140 7.20677 7.34428 7.63475 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.027563 B = 0.010284 C = 0.008162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.607544 B = 2722.129968 C = 3429.603950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.043 4.043 3 N -0.437 5.437 4 C 0.119 3.881 5 C 0.254 3.746 6 N -0.820 5.820 7 C -0.128 4.128 8 N -0.444 5.444 9 C 0.209 3.791 10 N -0.444 5.444 11 C 0.474 3.526 12 O -0.576 6.576 13 C -0.068 4.068 14 C -0.351 4.351 15 H 0.113 0.887 16 C 0.069 3.931 17 N -0.758 5.758 18 Si 0.989 3.011 19 H -0.263 1.263 20 H -0.289 1.289 21 H -0.271 1.271 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.412 0.588 26 H 0.420 0.580 27 H 0.183 0.817 28 H 0.192 0.808 29 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.481 9.918 -1.966 10.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.179 4.179 3 N -0.154 5.154 4 C -0.119 4.119 5 C 0.139 3.861 6 N -0.359 5.359 7 C -0.274 4.274 8 N -0.157 5.157 9 C -0.073 4.073 10 N -0.161 5.161 11 C 0.274 3.726 12 O -0.461 6.461 13 C -0.077 4.077 14 C -0.378 4.378 15 H 0.131 0.869 16 C -0.159 4.159 17 N -0.378 5.378 18 Si 0.815 3.185 19 H -0.190 1.190 20 H -0.216 1.216 21 H -0.196 1.196 22 H 0.080 0.920 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.243 0.757 26 H 0.252 0.748 27 H 0.200 0.800 28 H 0.209 0.791 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.131 10.012 -1.914 10.194 hybrid contribution 0.015 -0.923 -0.191 0.943 sum 0.146 9.089 -2.105 9.330 Atomic orbital electron populations 1.20148 0.86933 1.02495 1.01639 1.21136 0.97227 0.85571 1.13954 1.66974 1.03656 1.30409 1.14377 1.19003 0.87491 0.86036 1.19379 1.18129 0.91612 0.84982 0.91363 1.42101 1.09846 1.03675 1.80252 1.21869 0.88237 0.96758 1.20491 1.67601 1.37941 0.97271 1.12916 1.24358 0.80851 0.98028 1.04101 1.43868 1.08507 1.08224 1.55544 1.19244 0.90507 0.81680 0.81144 1.90484 1.66314 1.33427 1.55878 1.20620 0.89115 0.96417 1.01591 1.19532 1.05666 0.91024 1.21551 0.86933 1.26930 0.94266 0.93978 1.00700 1.69748 1.32219 1.00998 1.34846 0.85101 0.77648 0.79133 0.76622 1.19000 1.21568 1.19608 0.92009 0.90897 0.91209 0.75696 0.74787 0.79982 0.79092 0.87883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.93 9.66 71.24 0.69 -1.24 15 2 C -0.04 -1.89 6.89 43.32 0.30 -1.60 15 3 N -0.44 -18.47 9.39 -178.53 -1.68 -20.15 15 4 C 0.12 5.13 7.36 134.07 0.99 6.11 15 5 C 0.25 8.71 6.84 38.69 0.26 8.97 15 6 N -0.82 -19.60 9.07 -50.30 -0.46 -20.06 15 7 C -0.13 -4.26 11.12 84.49 0.94 -3.32 15 8 N -0.44 -17.15 10.36 -197.49 -2.05 -19.19 15 9 C 0.21 8.99 11.33 179.97 2.04 11.03 15 10 N -0.44 -20.90 2.76 -474.82 -1.31 -22.21 15 11 C 0.47 24.50 5.54 86.55 0.48 24.98 15 12 O -0.58 -31.36 12.26 -4.60 -0.06 -31.42 15 13 C -0.07 -3.36 5.02 -19.68 -0.10 -3.46 15 14 C -0.35 -17.41 8.32 23.20 0.19 -17.21 15 15 H 0.11 5.45 7.46 -2.91 -0.02 5.43 15 16 C 0.07 3.41 4.81 85.22 0.41 3.82 15 17 N -0.76 -36.86 13.94 21.82 0.30 -36.55 15 18 Si 0.99 44.98 25.36 68.60 1.74 46.72 15 19 H -0.26 -10.77 7.11 99.48 0.71 -10.07 15 20 H -0.29 -14.63 5.36 99.48 0.53 -14.10 15 21 H -0.27 -12.13 7.11 99.48 0.71 -11.43 15 22 H 0.06 2.02 8.14 -2.39 -0.02 2.00 15 23 H 0.07 2.23 8.14 -2.39 -0.02 2.21 15 24 H 0.07 2.43 7.00 -2.39 -0.02 2.42 15 25 H 0.41 9.82 8.20 -92.71 -0.76 9.06 15 26 H 0.42 6.67 8.86 -92.71 -0.82 5.84 15 27 H 0.18 4.57 8.06 -2.91 -0.02 4.55 15 28 H 0.19 7.93 7.36 -2.91 -0.02 7.91 15 29 H 0.31 13.48 8.30 -92.71 -0.77 12.71 15 Total: -1.00 -60.42 251.11 2.17 -58.25 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -0.53 Total: 16.53 kcal Atomic # 6 Polarization: 21.88 SS G_CDS: 6.20 Total: 28.08 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -5.19 Total: -118.16 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.06 Total: -31.42 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.74 Total: 46.72 kcal Total: -60.42 2.17 -58.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260054325.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.071 kcal (2) G-P(sol) polarization free energy of solvation -60.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds