Wall clock time and date at job start Mon Mar 30 2020 04:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35793 * 116.99748 * 2 1 4 4 C 1.39804 * 119.63077 * 0.02562 * 3 2 1 5 5 C 1.36459 * 120.90591 * 180.02562 * 4 3 2 6 6 C 1.39719 * 119.80812 * 359.95975 * 5 4 3 7 7 C 1.41804 * 121.79736 * 179.97438 * 6 5 4 8 8 O 1.35307 * 120.75516 * 0.04336 * 7 6 5 9 9 N 1.31929 * 118.48455 * 180.02562 * 7 6 5 10 10 C 1.34026 * 121.38252 * 359.97438 * 9 7 6 11 11 C 1.41332 * 118.75487 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00503 * 180.02562 * 11 10 9 13 13 C 1.40109 * 119.99657 * 359.72354 * 11 10 9 14 14 N 1.30664 * 120.00153 * 0.27878 * 13 11 10 15 15 Si 1.86803 * 119.99905 * 180.27311 * 13 11 10 16 16 H 1.48504 * 109.46768 * 60.00325 * 15 13 11 17 17 H 1.48490 * 109.47071 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47374 * 300.00602 * 15 13 11 19 19 N 1.33002 * 122.49612 * 0.27832 * 10 9 7 20 20 C 1.33510 * 120.34196 * 359.44847 * 19 10 9 21 21 C 1.37830 * 119.62867 * 179.97438 * 3 2 1 22 22 H 1.09009 * 109.47046 * 60.00783 * 1 2 3 23 23 H 1.09008 * 109.46953 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47401 * 300.00531 * 1 2 3 25 25 H 1.08002 * 119.54784 * 0.02946 * 4 3 2 26 26 H 1.08002 * 120.09203 * 179.97438 * 5 4 3 27 27 H 0.96704 * 113.99624 * 269.97754 * 8 7 6 28 28 H 0.96996 * 120.00325 * 179.97438 * 14 13 11 29 29 H 1.08003 * 120.29702 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2100 0.0000 4 6 1.2764 2.3775 0.0005 5 6 1.8687 3.6069 0.0000 6 6 3.2623 3.7064 -0.0002 7 6 3.9217 4.9618 -0.0013 8 8 3.2141 6.1151 -0.0012 9 7 5.2409 4.9796 -0.0019 10 6 5.9542 3.8449 -0.0011 11 6 7.3650 3.9288 -0.0014 12 1 7.9596 3.0272 -0.0011 13 6 7.9923 5.1816 -0.0083 14 7 7.2730 6.2724 -0.0090 15 14 9.8570 5.2924 -0.0163 16 1 10.3876 4.6188 -1.2287 17 1 10.2680 6.7193 -0.0223 18 1 10.3977 4.6271 1.1962 19 7 5.3848 2.6430 -0.0050 20 6 4.0548 2.5267 0.0011 21 6 3.4223 1.2732 0.0005 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.1988 2.3055 0.0014 26 1 1.2618 4.5003 0.0000 27 1 3.0080 6.4501 -0.8847 28 1 7.7072 7.1397 -0.0134 29 1 4.0094 0.3667 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260057787.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:54 Heat of formation + Delta-G solvation = -37.867218 kcal Electronic energy + Delta-G solvation = -17005.179846 eV Core-core repulsion = 14086.191743 eV Total energy + Delta-G solvation = -2918.988103 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.68637 -40.24592 -38.31485 -37.30133 -35.31598 -33.46975 -31.30282 -31.20693 -28.46745 -27.84794 -24.66400 -23.91250 -22.87894 -20.61592 -19.32292 -18.93434 -18.40199 -17.37991 -16.94655 -16.59830 -16.55296 -16.14644 -15.06881 -14.91876 -14.58878 -14.40648 -13.71476 -13.35651 -13.24812 -13.13990 -13.01973 -12.73795 -12.57256 -12.04922 -11.92186 -11.85445 -11.33513 -11.07271 -10.88012 -9.51257 -9.43124 -8.99986 -8.58020 -6.84920 -0.26811 0.34753 1.26192 1.38500 1.47765 1.53775 2.15466 2.21600 2.39144 2.81476 2.87377 3.79311 3.84752 4.08805 4.10913 4.24364 4.39581 4.48747 4.53380 4.56967 4.78619 4.85508 5.04311 5.27276 5.31092 5.39608 5.58906 5.75867 5.99047 6.27412 6.44514 6.54723 6.83885 7.00069 8.07087 8.20754 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.039871 B = 0.006157 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.095866 B = 4546.476687 C = 5230.887027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.335 6.335 3 C 0.181 3.819 4 C -0.260 4.260 5 C 0.007 3.993 6 C -0.314 4.314 7 C 0.382 3.618 8 O -0.479 6.479 9 N -0.532 5.532 10 C 0.379 3.621 11 C -0.407 4.407 12 H 0.098 0.902 13 C 0.020 3.980 14 N -0.730 5.730 15 Si 1.006 2.994 16 H -0.254 1.254 17 H -0.257 1.257 18 H -0.257 1.257 19 N -0.660 5.660 20 C 0.226 3.774 21 C -0.231 4.231 22 H 0.069 0.931 23 H 0.122 0.878 24 H 0.067 0.933 25 H 0.164 0.836 26 H 0.154 0.846 27 H 0.416 0.584 28 H 0.291 0.709 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.997 -1.953 -1.799 10.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.248 6.248 3 C 0.133 3.867 4 C -0.280 4.280 5 C -0.013 4.013 6 C -0.323 4.323 7 C 0.175 3.825 8 O -0.288 6.288 9 N -0.258 5.258 10 C 0.145 3.855 11 C -0.440 4.440 12 H 0.116 0.884 13 C -0.206 4.206 14 N -0.350 5.350 15 Si 0.824 3.176 16 H -0.178 1.178 17 H -0.181 1.181 18 H -0.181 1.181 19 N -0.387 5.387 20 C 0.090 3.910 21 C -0.252 4.252 22 H 0.087 0.913 23 H 0.140 0.860 24 H 0.086 0.914 25 H 0.181 0.819 26 H 0.172 0.828 27 H 0.276 0.724 28 H 0.103 0.897 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.801 -1.911 -1.216 9.088 hybrid contribution -0.332 0.286 -0.406 0.598 sum -9.133 -1.625 -1.623 9.417 Atomic orbital electron populations 1.23420 0.76001 1.05695 1.02643 1.86020 1.23998 1.26620 1.88137 1.18875 0.90994 0.85035 0.91825 1.21032 1.00991 0.90834 1.15100 1.20779 0.91487 0.98628 0.90414 1.19472 0.96914 0.93967 1.21946 1.20105 0.87957 0.84970 0.89517 1.84507 1.71491 1.37706 1.35127 1.68742 1.06065 1.32651 1.18335 1.20092 0.95153 0.81549 0.88718 1.19941 0.88867 0.95294 1.39924 0.88361 1.27263 1.07220 0.93830 0.92246 1.70162 1.40158 0.99571 1.25093 0.84903 0.73076 0.79136 0.80490 1.17831 1.18106 1.18098 1.69125 1.09982 1.26441 1.33146 1.18800 0.89762 0.92536 0.89873 1.19718 0.92121 0.95626 1.17779 0.91272 0.86017 0.91440 0.81876 0.82799 0.72375 0.89735 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.80 113.37 1.11 1.41 15 2 O -0.33 -10.32 10.47 -91.23 -0.96 -11.27 15 3 C 0.18 6.65 6.68 22.55 0.15 6.80 15 4 C -0.26 -8.16 8.95 22.23 0.20 -7.96 15 5 C 0.01 0.26 9.58 22.21 0.21 0.47 15 6 C -0.31 -14.64 5.77 -21.08 -0.12 -14.76 15 7 C 0.38 18.73 7.88 85.56 0.67 19.41 15 8 O -0.48 -18.69 12.89 -85.94 -1.11 -19.80 15 9 N -0.53 -30.31 7.78 -306.29 -2.38 -32.70 15 10 C 0.38 22.58 7.35 135.05 0.99 23.58 15 11 C -0.41 -22.88 9.35 23.49 0.22 -22.66 15 12 H 0.10 5.32 7.85 -2.91 -0.02 5.30 15 13 C 0.02 1.00 5.50 85.32 0.47 1.47 15 14 N -0.73 -37.80 11.37 21.85 0.25 -37.55 15 15 Si 1.01 36.64 29.56 68.60 2.03 38.67 15 16 H -0.25 -8.95 7.11 99.48 0.71 -8.25 15 17 H -0.26 -8.57 7.11 99.48 0.71 -7.87 15 18 H -0.26 -9.15 7.11 99.48 0.71 -8.44 15 19 N -0.66 -38.69 10.34 -187.83 -1.94 -40.63 15 20 C 0.23 11.76 6.62 40.38 0.27 12.03 15 21 C -0.23 -10.51 9.99 22.70 0.23 -10.28 15 22 H 0.07 1.06 7.64 -2.38 -0.02 1.04 15 23 H 0.12 1.53 8.14 -2.38 -0.02 1.52 15 24 H 0.07 1.06 7.63 -2.39 -0.02 1.04 15 25 H 0.16 3.57 6.22 -2.91 -0.02 3.55 15 26 H 0.15 4.28 7.68 -2.91 -0.02 4.26 15 27 H 0.42 11.44 9.06 -74.05 -0.67 10.77 15 28 H 0.29 13.31 8.29 -92.71 -0.77 12.54 15 29 H 0.12 5.36 8.06 -2.91 -0.02 5.34 15 Total: -1.00 -73.80 261.77 0.83 -72.97 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.54 Total: 20.79 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 4.40 Total: 9.51 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -4.08 Total: -110.87 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -2.06 Total: -31.07 kcal Atomic # 14 Polarization: 36.64 SS G_CDS: 2.03 Total: 38.67 kcal Total: -73.80 0.83 -72.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057787.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.103 kcal (2) G-P(sol) polarization free energy of solvation -73.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds