Wall clock time and date at job start Mon Mar 30 2020 04:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35523 * 116.99697 * 2 1 4 4 C 1.39478 * 119.26735 * 180.02562 * 3 2 1 5 5 C 1.36858 * 119.55269 * 180.02562 * 4 3 2 6 6 C 1.40270 * 118.16227 * 0.02562 * 5 4 3 7 7 C 1.46157 * 121.27995 * 179.97438 * 6 5 4 8 8 C 1.35910 * 118.44628 * 180.02562 * 7 6 5 9 9 C 1.40798 * 120.13034 * 359.73556 * 8 7 6 10 10 O 1.21908 * 119.10586 * 180.29269 * 9 8 7 11 11 N 1.34388 * 121.78508 * 0.55244 * 9 8 7 12 12 C 1.36982 * 119.46499 * 179.72131 * 11 9 8 13 13 H 1.08004 * 120.00103 * 139.06376 * 12 11 9 14 14 C 1.39109 * 119.99973 * 319.05724 * 12 11 9 15 15 N 1.31256 * 120.00260 * 147.32653 * 14 12 11 16 16 Si 1.86805 * 120.00091 * 327.04958 * 14 12 11 17 17 H 1.48501 * 109.46763 * 275.08975 * 16 14 12 18 18 H 1.48494 * 109.47134 * 35.08846 * 16 14 12 19 19 H 1.48500 * 109.47094 * 155.09160 * 16 14 12 20 20 C 1.37835 * 121.07053 * 359.44344 * 11 9 8 21 21 N 1.32136 * 119.26732 * 0.02562 * 3 2 1 22 22 H 1.09006 * 109.46755 * 299.99222 * 1 2 3 23 23 H 1.08996 * 109.47682 * 59.99267 * 1 2 3 24 24 H 1.09000 * 109.46959 * 180.02562 * 1 2 3 25 25 H 1.07999 * 120.21811 * 0.02562 * 4 3 2 26 26 H 1.08003 * 120.92141 * 180.02562 * 5 4 3 27 27 H 1.07992 * 120.77610 * 0.06767 * 7 6 5 28 28 H 1.07994 * 119.93614 * 180.02562 * 8 7 6 29 29 H 0.96991 * 120.00401 * 179.73018 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 3.4379 1.2628 -0.0005 5 6 4.0653 2.4791 0.0000 6 6 3.2697 3.6344 0.0016 7 6 3.8680 4.9679 0.0028 8 6 3.0427 6.0477 0.0049 9 6 1.6460 5.8698 0.0003 10 8 0.9232 6.8515 -0.0032 11 7 1.0881 4.6472 0.0047 12 6 -0.2766 4.5293 0.0057 13 1 -0.7541 3.7768 -0.6044 14 6 -1.0476 5.3788 0.7925 15 7 -2.2407 5.7462 0.3871 16 14 -0.3880 5.9906 2.4297 17 1 -0.6720 4.9847 3.4846 18 1 1.0786 6.1984 2.3259 19 1 -1.0465 7.2747 2.7799 20 6 1.8668 3.5099 0.0026 21 7 1.3104 2.3064 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3633 -1.0277 0.0005 25 1 4.0180 0.3518 -0.0014 26 1 5.1431 2.5477 -0.0008 27 1 4.9407 5.0922 0.0014 28 1 3.4590 7.0442 0.0054 29 1 -2.7799 6.3354 0.9376 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260068441.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:55 Heat of formation + Delta-G solvation = 8.686239 kcal Electronic energy + Delta-G solvation = -17725.041230 eV Core-core repulsion = 14808.071836 eV Total energy + Delta-G solvation = -2916.969394 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.82062 -39.26504 -37.28868 -34.73546 -34.03700 -32.57891 -31.00043 -28.95287 -26.71766 -25.74596 -23.26546 -22.82919 -21.72177 -19.15973 -18.12271 -17.33596 -16.58453 -15.82456 -15.65612 -15.34646 -14.76264 -14.34466 -13.80290 -13.66788 -13.20402 -13.01199 -12.81759 -12.73085 -12.14161 -11.62408 -11.37867 -11.29609 -11.02388 -10.73630 -10.37398 -10.04489 -9.33623 -9.12279 -9.08661 -8.75566 -8.26948 -7.19526 -6.73216 -4.26626 1.07548 1.66194 2.49892 3.21016 3.25890 3.32124 3.41885 3.84264 3.88708 4.19646 4.56349 4.96161 5.01866 5.23436 5.32322 5.36490 5.52743 5.64104 5.67402 5.71771 6.02837 6.12624 6.25965 6.35919 6.73369 6.79083 6.90798 7.27831 7.57676 7.79269 8.05900 8.48239 8.67412 9.00331 9.38563 10.29681 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.022098 B = 0.011146 C = 0.008227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.782554 B = 2511.440191 C = 3402.679298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.313 6.313 3 C 0.362 3.638 4 C -0.242 4.242 5 C 0.010 3.990 6 C -0.229 4.229 7 C -0.041 4.041 8 C -0.230 4.230 9 C 0.488 3.512 10 O -0.544 6.544 11 N -0.328 5.328 12 C -0.356 4.356 13 H 0.119 0.881 14 C 0.116 3.884 15 N -0.800 5.800 16 Si 0.902 3.098 17 H -0.284 1.284 18 H -0.264 1.264 19 H -0.277 1.277 20 C 0.373 3.627 21 N -0.541 5.541 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.089 0.911 25 H 0.135 0.865 26 H 0.140 0.860 27 H 0.131 0.869 28 H 0.139 0.861 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.103 -7.936 0.815 12.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.219 6.219 3 C 0.172 3.828 4 C -0.264 4.264 5 C -0.015 4.015 6 C -0.235 4.235 7 C -0.064 4.064 8 C -0.252 4.252 9 C 0.290 3.710 10 O -0.427 6.427 11 N -0.028 5.028 12 C -0.481 4.481 13 H 0.136 0.864 14 C -0.102 4.102 15 N -0.428 5.428 16 Si 0.728 3.272 17 H -0.211 1.211 18 H -0.188 1.188 19 H -0.202 1.202 20 C 0.140 3.860 21 N -0.272 5.272 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.107 0.893 25 H 0.153 0.847 26 H 0.157 0.843 27 H 0.148 0.852 28 H 0.157 0.843 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.558 -7.379 0.804 11.328 hybrid contribution 0.744 0.436 0.714 1.119 sum 9.302 -6.943 1.518 11.706 Atomic orbital electron populations 1.22827 0.77246 1.02086 1.03349 1.86147 1.23022 1.25059 1.87668 1.19705 0.88870 0.84105 0.90115 1.20423 0.91533 0.99115 1.15379 1.20870 0.99275 0.90195 0.91195 1.19064 0.91992 0.94682 1.17777 1.22106 0.98912 0.90351 0.95022 1.22026 0.92779 0.99871 1.10492 1.16974 0.89320 0.82907 0.81835 1.90725 1.63016 1.36400 1.52521 1.41617 1.07717 1.02915 1.50528 1.19120 0.77334 1.21859 1.29777 0.86370 1.25253 0.94359 0.92201 0.98370 1.69795 1.11518 1.26095 1.35394 0.86417 0.81172 0.77995 0.81597 1.21128 1.18825 1.20182 1.18242 0.86722 0.86147 0.94893 1.66714 1.39635 0.97194 1.23648 0.91911 0.92062 0.89264 0.84745 0.84252 0.85160 0.84347 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.36 101.05 1.05 1.64 15 2 O -0.31 -5.19 10.46 -18.26 -0.19 -5.38 15 3 C 0.36 6.65 7.49 -16.96 -0.13 6.53 15 4 C -0.24 -3.68 9.97 -39.62 -0.39 -4.07 15 5 C 0.01 0.14 9.92 -39.32 -0.39 -0.25 15 6 C -0.23 -4.28 5.88 -104.98 -0.62 -4.90 15 7 C -0.04 -0.70 10.11 -37.24 -0.38 -1.08 15 8 C -0.23 -4.67 9.91 -39.45 -0.39 -5.06 15 9 C 0.49 12.57 5.27 -15.47 -0.08 12.49 15 10 O -0.54 -15.73 13.58 5.00 0.07 -15.66 15 11 N -0.33 -8.58 2.32 -63.86 -0.15 -8.72 15 12 C -0.36 -10.15 8.94 -14.93 -0.13 -10.28 15 13 H 0.12 3.51 7.95 -52.48 -0.42 3.09 15 14 C 0.12 3.34 4.34 -17.47 -0.08 3.26 15 15 N -0.80 -23.15 13.95 55.50 0.77 -22.38 15 16 Si 0.90 23.35 26.31 -169.99 -4.47 18.88 15 17 H -0.28 -7.05 7.11 56.52 0.40 -6.64 15 18 H -0.26 -6.96 5.86 56.52 0.33 -6.63 15 19 H -0.28 -7.01 7.11 56.52 0.40 -6.61 15 20 C 0.37 8.55 7.32 -155.33 -1.14 7.41 15 21 N -0.54 -11.88 8.29 -12.20 -0.10 -11.98 15 22 H 0.06 1.01 8.09 -51.93 -0.42 0.58 15 23 H 0.06 0.97 8.09 -51.93 -0.42 0.55 15 24 H 0.09 0.98 8.14 -51.93 -0.42 0.56 15 25 H 0.13 1.62 8.06 -52.49 -0.42 1.20 15 26 H 0.14 1.42 8.06 -52.48 -0.42 0.99 15 27 H 0.13 1.58 8.06 -52.49 -0.42 1.15 15 28 H 0.14 2.46 8.06 -52.49 -0.42 2.03 15 29 H 0.28 7.56 8.30 -40.82 -0.34 7.22 15 LS Contribution 257.29 15.07 3.88 3.88 Total: -1.00 -32.72 257.29 -5.45 -38.17 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -2.58 Total: -2.49 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -2.68 Total: 5.69 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.52 Total: -43.08 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.12 Total: -21.04 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -4.47 Total: 18.88 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.72 -5.45 -38.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260068441.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.855 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds