Wall clock time and date at job start Mon Mar 30 2020 04:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35523 * 116.99697 * 2 1 4 4 C 1.39478 * 119.26735 * 180.02562 * 3 2 1 5 5 C 1.36858 * 119.55269 * 180.02562 * 4 3 2 6 6 C 1.40270 * 118.16227 * 0.02562 * 5 4 3 7 7 C 1.46157 * 121.27995 * 179.97438 * 6 5 4 8 8 C 1.35910 * 118.44628 * 180.02562 * 7 6 5 9 9 C 1.40798 * 120.13034 * 359.73556 * 8 7 6 10 10 O 1.21908 * 119.10586 * 180.29269 * 9 8 7 11 11 N 1.34388 * 121.78508 * 0.55244 * 9 8 7 12 12 C 1.36982 * 119.46499 * 179.72131 * 11 9 8 13 13 H 1.08004 * 120.00103 * 139.06376 * 12 11 9 14 14 C 1.39109 * 119.99973 * 319.05724 * 12 11 9 15 15 N 1.31256 * 120.00260 * 147.32653 * 14 12 11 16 16 Si 1.86805 * 120.00091 * 327.04958 * 14 12 11 17 17 H 1.48501 * 109.46763 * 275.08975 * 16 14 12 18 18 H 1.48494 * 109.47134 * 35.08846 * 16 14 12 19 19 H 1.48500 * 109.47094 * 155.09160 * 16 14 12 20 20 C 1.37835 * 121.07053 * 359.44344 * 11 9 8 21 21 N 1.32136 * 119.26732 * 0.02562 * 3 2 1 22 22 H 1.09006 * 109.46755 * 299.99222 * 1 2 3 23 23 H 1.08996 * 109.47682 * 59.99267 * 1 2 3 24 24 H 1.09000 * 109.46959 * 180.02562 * 1 2 3 25 25 H 1.07999 * 120.21811 * 0.02562 * 4 3 2 26 26 H 1.08003 * 120.92141 * 180.02562 * 5 4 3 27 27 H 1.07992 * 120.77610 * 0.06767 * 7 6 5 28 28 H 1.07994 * 119.93614 * 180.02562 * 8 7 6 29 29 H 0.96991 * 120.00401 * 179.73018 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 3.4379 1.2628 -0.0005 5 6 4.0653 2.4791 0.0000 6 6 3.2697 3.6344 0.0016 7 6 3.8680 4.9679 0.0028 8 6 3.0427 6.0477 0.0049 9 6 1.6460 5.8698 0.0003 10 8 0.9232 6.8515 -0.0032 11 7 1.0881 4.6472 0.0047 12 6 -0.2766 4.5293 0.0057 13 1 -0.7541 3.7768 -0.6044 14 6 -1.0476 5.3788 0.7925 15 7 -2.2407 5.7462 0.3871 16 14 -0.3880 5.9906 2.4297 17 1 -0.6720 4.9847 3.4846 18 1 1.0786 6.1984 2.3259 19 1 -1.0465 7.2747 2.7799 20 6 1.8668 3.5099 0.0026 21 7 1.3104 2.3064 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3633 -1.0277 0.0005 25 1 4.0180 0.3518 -0.0014 26 1 5.1431 2.5477 -0.0008 27 1 4.9407 5.0922 0.0014 28 1 3.4590 7.0442 0.0054 29 1 -2.7799 6.3354 0.9376 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260068441.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:55 Heat of formation + Delta-G solvation = -16.410543 kcal Electronic energy + Delta-G solvation = -17726.129508 eV Core-core repulsion = 14808.071836 eV Total energy + Delta-G solvation = -2918.057672 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.45847 -40.81802 -38.81194 -36.51827 -35.65393 -34.44295 -32.55547 -30.43652 -28.10772 -27.60673 -24.83776 -24.33710 -23.36192 -20.73294 -19.88706 -18.82928 -18.25995 -17.52443 -17.18610 -16.95480 -16.38369 -16.15565 -15.43829 -15.08335 -14.82856 -14.69259 -14.43117 -14.25143 -13.79552 -13.28582 -13.00181 -12.81598 -12.55364 -12.51552 -12.14161 -11.79395 -11.09306 -10.90962 -10.68062 -10.44512 -10.00413 -8.86564 -8.74582 -6.39870 -0.34609 0.19400 0.94374 1.15788 1.23214 1.25780 2.00884 2.10773 2.25633 2.34800 2.64628 3.26473 3.54305 3.75179 3.89467 4.02841 4.27808 4.36993 4.41142 4.49222 4.75672 4.83028 4.89359 4.99865 5.31994 5.33788 5.44695 5.57420 5.71961 6.18066 6.32029 6.51596 6.80711 7.24957 7.53121 8.30086 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.022098 B = 0.011146 C = 0.008227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.782554 B = 2511.440191 C = 3402.679298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.308 6.308 3 C 0.348 3.652 4 C -0.223 4.223 5 C 0.037 3.963 6 C -0.239 4.239 7 C 0.013 3.987 8 C -0.259 4.259 9 C 0.471 3.529 10 O -0.600 6.600 11 N -0.357 5.357 12 C -0.382 4.382 13 H 0.079 0.921 14 C 0.080 3.920 15 N -0.854 5.854 16 Si 0.945 3.055 17 H -0.273 1.273 18 H -0.271 1.271 19 H -0.275 1.275 20 C 0.354 3.646 21 N -0.589 5.589 22 H 0.042 0.958 23 H 0.041 0.959 24 H 0.134 0.866 25 H 0.181 0.819 26 H 0.210 0.790 27 H 0.204 0.796 28 H 0.163 0.837 29 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.823 -10.218 1.330 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.213 6.213 3 C 0.161 3.839 4 C -0.244 4.244 5 C 0.013 3.987 6 C -0.245 4.245 7 C -0.008 4.008 8 C -0.280 4.280 9 C 0.274 3.726 10 O -0.487 6.487 11 N -0.060 5.060 12 C -0.508 4.508 13 H 0.097 0.903 14 C -0.133 4.133 15 N -0.485 5.485 16 Si 0.770 3.230 17 H -0.199 1.199 18 H -0.196 1.196 19 H -0.200 1.200 20 C 0.123 3.877 21 N -0.320 5.320 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.152 0.848 25 H 0.199 0.801 26 H 0.226 0.774 27 H 0.221 0.779 28 H 0.180 0.820 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.309 -9.752 1.324 17.366 hybrid contribution -0.622 0.745 0.454 1.072 sum 13.686 -9.007 1.778 16.480 Atomic orbital electron populations 1.22924 0.76602 1.04326 1.01432 1.86170 1.23593 1.24267 1.87316 1.20430 0.90585 0.83610 0.89257 1.21080 0.89858 1.01589 1.11886 1.21618 1.02013 0.87648 0.87412 1.19669 0.90253 0.97621 1.16956 1.22841 1.01740 0.87827 0.88416 1.22177 0.90132 1.02628 1.13055 1.17963 0.91461 0.82211 0.80951 1.90668 1.64593 1.37922 1.55533 1.41583 1.06903 1.04222 1.53338 1.18635 0.79318 1.22034 1.30819 0.90323 1.25781 0.94561 0.92531 1.00384 1.69858 1.13104 1.28851 1.36683 0.85771 0.80039 0.77794 0.79421 1.19924 1.19558 1.20013 1.18815 0.88615 0.85575 0.94672 1.66609 1.41907 0.98151 1.25381 0.93920 0.94017 0.84831 0.80135 0.77358 0.77890 0.81952 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.24 10.36 113.37 1.17 2.42 15 2 O -0.31 -9.51 10.46 -88.26 -0.92 -10.43 15 3 C 0.35 11.88 7.49 84.95 0.64 12.52 15 4 C -0.22 -5.28 9.97 22.25 0.22 -5.06 15 5 C 0.04 0.78 9.92 22.44 0.22 1.01 15 6 C -0.24 -7.71 5.88 -20.09 -0.12 -7.83 15 7 C 0.01 0.36 10.11 23.79 0.24 0.60 15 8 C -0.26 -9.84 9.91 22.36 0.22 -9.62 15 9 C 0.47 24.83 5.27 84.93 0.45 25.28 15 10 O -0.60 -36.57 13.58 -5.02 -0.07 -36.64 15 11 N -0.36 -19.44 2.32 -474.29 -1.10 -20.54 15 12 C -0.38 -23.68 8.94 84.10 0.75 -22.93 15 13 H 0.08 5.24 7.95 -2.91 -0.02 5.21 15 14 C 0.08 4.94 4.34 84.99 0.37 5.31 15 15 N -0.85 -53.86 13.95 21.68 0.30 -53.56 15 16 Si 0.95 50.74 26.31 68.60 1.80 52.55 15 17 H -0.27 -13.70 7.11 99.48 0.71 -13.00 15 18 H -0.27 -14.61 5.86 99.48 0.58 -14.03 15 19 H -0.28 -14.36 7.11 99.48 0.71 -13.65 15 20 C 0.35 16.04 7.32 133.82 0.98 17.02 15 21 N -0.59 -25.97 8.29 -305.53 -2.53 -28.51 15 22 H 0.04 1.42 8.09 -2.38 -0.02 1.40 15 23 H 0.04 1.38 8.09 -2.39 -0.02 1.36 15 24 H 0.13 2.69 8.14 -2.39 -0.02 2.67 15 25 H 0.18 2.76 8.06 -2.91 -0.02 2.74 15 26 H 0.21 1.70 8.06 -2.91 -0.02 1.68 15 27 H 0.20 2.74 8.06 -2.91 -0.02 2.72 15 28 H 0.16 5.27 8.06 -2.91 -0.02 5.25 15 29 H 0.29 16.58 8.30 -92.71 -0.77 15.81 15 Total: -1.00 -83.93 257.29 3.68 -80.25 By element: Atomic # 1 Polarization: -2.89 SS G_CDS: 1.05 Total: -1.84 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 5.15 Total: 18.71 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -3.33 Total: -102.60 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -0.99 Total: -47.07 kcal Atomic # 14 Polarization: 50.74 SS G_CDS: 1.80 Total: 52.55 kcal Total: -83.93 3.68 -80.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260068441.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.842 kcal (2) G-P(sol) polarization free energy of solvation -83.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds