Wall clock time and date at job start Mon Mar 30 2020 03:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31157 * 1 3 3 Si 1.86806 * 119.99832 * 2 1 4 4 H 1.48497 * 109.47173 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47001 * 120.00330 * 3 2 1 6 6 H 1.48500 * 109.46818 * 239.99456 * 3 2 1 7 7 C 1.39629 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00184 * 206.38846 * 7 2 1 9 9 C 1.41168 * 120.00027 * 26.39365 * 7 2 1 10 10 C 1.46776 * 126.98243 * 26.12222 * 9 7 2 11 11 O 1.35868 * 126.36022 * 359.97438 * 10 9 7 12 12 N 1.30677 * 107.28535 * 179.85690 * 10 9 7 13 13 N 1.39682 * 109.73636 * 0.41384 * 12 10 9 14 14 C 1.40033 * 125.16074 * 179.72304 * 13 12 10 15 15 C 1.38891 * 120.06844 * 144.72700 * 14 13 12 16 16 C 1.38109 * 119.92545 * 179.72628 * 15 14 13 17 17 C 1.38290 * 120.07089 * 0.57139 * 16 15 14 18 18 C 1.38291 * 120.14422 * 359.70397 * 17 16 15 19 19 C 1.38115 * 120.06928 * 359.97438 * 18 17 16 20 20 C 1.34975 * 109.68152 * 359.72730 * 13 12 10 21 21 O 1.35332 * 126.37125 * 180.02562 * 20 13 12 22 22 H 0.96994 * 119.99899 * 185.74375 * 1 2 3 23 23 H 0.96703 * 113.99592 * 89.25345 * 11 10 9 24 24 H 1.07998 * 120.03640 * 0.02627 * 15 14 13 25 25 H 1.07997 * 119.96317 * 180.32041 * 16 15 14 26 26 H 1.07994 * 119.93179 * 179.72377 * 17 16 15 27 27 H 1.07998 * 119.96758 * 180.02562 * 18 17 16 28 28 H 1.07996 * 120.03705 * 180.02562 * 19 18 17 29 29 H 0.96703 * 113.99959 * 270.00273 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 14 2.2456 1.6178 0.0000 4 1 1.2805 2.7465 -0.0006 5 1 3.0993 1.6964 1.2124 6 1 3.0994 1.6964 -1.2125 7 6 2.0098 -1.2092 0.0005 8 1 3.0053 -1.2577 0.4162 9 6 1.4143 -2.3683 -0.5424 10 6 0.3765 -2.4251 -1.5787 11 8 -0.1984 -1.3635 -2.2020 12 7 0.1097 -3.6864 -1.7924 13 7 0.8968 -4.4830 -0.9575 14 6 0.8676 -5.8824 -0.9160 15 6 2.0367 -6.5964 -0.6867 16 6 2.0035 -7.9763 -0.6408 17 6 0.8100 -8.6475 -0.8345 18 6 -0.3548 -7.9398 -1.0687 19 6 -0.3295 -6.5594 -1.1093 20 6 1.6898 -3.6992 -0.1968 21 8 2.5849 -4.1196 0.7272 22 1 -0.4850 -0.8358 0.0841 23 1 0.2664 -1.0772 -3.0003 24 1 2.9698 -6.0729 -0.5397 25 1 2.9112 -8.5319 -0.4573 26 1 0.7874 -9.7267 -0.8025 27 1 -1.2853 -8.4669 -1.2192 28 1 -1.2395 -6.0072 -1.2918 29 1 2.2179 -4.2106 1.6173 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260083621.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:10 Heat of formation + Delta-G solvation = 20.192111 kcal Electronic energy + Delta-G solvation = -17241.843501 eV Core-core repulsion = 14325.373039 eV Total energy + Delta-G solvation = -2916.470462 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.17454 -38.40454 -36.57053 -35.52501 -33.74290 -31.93324 -30.66219 -28.58713 -27.89204 -24.69331 -22.38893 -22.22183 -20.18824 -20.03129 -18.52525 -17.04021 -16.74303 -16.02631 -15.64231 -14.75502 -14.22891 -14.16790 -13.88156 -13.74370 -13.17949 -13.07786 -12.68438 -11.97535 -11.92354 -11.57380 -11.27238 -11.08055 -10.87000 -10.57187 -10.36279 -9.90496 -9.17959 -8.90058 -8.80337 -8.70519 -7.82812 -7.32618 -7.10704 -4.19844 1.42731 1.64944 2.77235 3.06494 3.21331 3.22593 3.40770 3.72137 4.08140 4.10711 4.80814 5.00575 5.16162 5.18707 5.34658 5.48719 5.69641 5.80566 6.12654 6.18033 6.38632 6.63827 6.70135 6.76080 7.01558 7.03944 7.14645 7.75150 7.87316 7.98767 8.37688 8.62096 8.73345 8.87096 8.99254 10.18574 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.043934 B = 0.006429 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.168851 B = 4354.369001 C = 4810.121395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.034 3.966 3 Si 1.069 2.931 4 H -0.276 1.276 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.504 4.504 8 H 0.077 0.923 9 C -0.007 4.007 10 C 0.220 3.780 11 O -0.441 6.441 12 N -0.296 5.296 13 N -0.329 5.329 14 C 0.193 3.807 15 C -0.139 4.139 16 C -0.099 4.099 17 C -0.155 4.155 18 C -0.101 4.101 19 C -0.140 4.140 20 C 0.027 3.973 21 O -0.446 6.446 22 H 0.294 0.706 23 H 0.380 0.620 24 H 0.133 0.867 25 H 0.122 0.878 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.607 -8.375 -0.855 8.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.189 4.189 3 Si 0.894 3.106 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.534 4.534 8 H 0.096 0.904 9 C -0.018 4.018 10 C 0.009 3.991 11 O -0.242 6.242 12 N -0.129 5.129 13 N -0.123 5.123 14 C 0.097 3.903 15 C -0.161 4.161 16 C -0.118 4.118 17 C -0.174 4.174 18 C -0.120 4.120 19 C -0.161 4.161 20 C -0.128 4.128 21 O -0.246 6.246 22 H 0.106 0.894 23 H 0.234 0.766 24 H 0.151 0.849 25 H 0.140 0.860 26 H 0.136 0.864 27 H 0.139 0.861 28 H 0.144 0.856 29 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 0.743 -7.374 -1.488 7.559 hybrid contribution 0.607 -1.208 0.547 1.458 sum 1.350 -8.581 -0.941 8.738 Atomic orbital electron populations 1.70492 1.07857 1.33650 1.27792 1.26867 0.95667 1.03787 0.92548 0.83558 0.75415 0.73918 0.77731 1.20057 1.20476 1.20320 1.19582 1.03384 0.92757 1.37673 0.90444 1.19104 0.94929 0.91241 0.96521 1.21279 0.96786 0.85369 0.95617 1.84969 1.52734 1.42964 1.43537 1.76476 1.16736 1.03023 1.16625 1.44646 1.31634 1.01925 1.34096 1.17547 0.93905 0.80135 0.98721 1.21083 0.97304 0.93974 1.03725 1.20903 0.97955 0.93338 0.99586 1.20995 0.92960 0.99464 1.03998 1.20917 0.98210 0.93253 0.99582 1.20980 0.96939 0.94365 1.03778 1.18002 1.05551 0.87641 1.01624 1.84864 1.32874 1.88135 1.18742 0.89356 0.76603 0.84906 0.85993 0.86423 0.86089 0.85635 0.79760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.72 12.01 55.53 0.67 -20.05 15 2 C 0.03 0.86 4.99 -17.32 -0.09 0.78 15 3 Si 1.07 21.60 30.00 -169.99 -5.10 16.50 15 4 H -0.28 -5.55 7.11 56.52 0.40 -5.15 15 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 15 6 H -0.28 -5.38 7.11 56.52 0.40 -4.98 15 7 C -0.50 -13.42 9.26 -37.95 -0.35 -13.77 15 8 H 0.08 2.07 7.97 -52.49 -0.42 1.65 15 9 C -0.01 -0.18 5.50 -104.58 -0.58 -0.76 15 10 C 0.22 5.60 7.58 -14.59 -0.11 5.49 15 11 O -0.44 -10.28 11.34 -19.32 -0.22 -10.50 15 12 N -0.30 -7.34 12.14 31.92 0.39 -6.95 15 13 N -0.33 -7.81 3.70 -9.97 -0.04 -7.85 15 14 C 0.19 3.92 6.36 -83.63 -0.53 3.39 15 15 C -0.14 -2.50 9.12 -39.39 -0.36 -2.86 15 16 C -0.10 -1.43 10.04 -39.61 -0.40 -1.82 15 17 C -0.15 -2.07 10.04 -39.54 -0.40 -2.46 15 18 C -0.10 -1.45 10.04 -39.61 -0.40 -1.85 15 19 C -0.14 -2.51 9.73 -39.39 -0.38 -2.89 15 20 C 0.03 0.68 7.73 -15.42 -0.12 0.57 15 21 O -0.45 -9.93 11.90 -17.69 -0.21 -10.14 15 22 H 0.29 8.28 6.71 -40.82 -0.27 8.00 15 23 H 0.38 7.02 9.06 45.56 0.41 7.43 15 24 H 0.13 2.50 6.86 -52.49 -0.36 2.14 15 25 H 0.12 1.40 8.06 -52.49 -0.42 0.98 15 26 H 0.12 1.21 8.06 -52.49 -0.42 0.78 15 27 H 0.12 1.39 8.06 -52.49 -0.42 0.96 15 28 H 0.13 2.31 8.04 -52.49 -0.42 1.89 15 29 H 0.35 6.51 9.06 45.56 0.41 6.92 15 LS Contribution 264.67 15.07 3.99 3.99 Total: -1.00 -30.65 264.67 -4.95 -35.59 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -0.71 Total: 15.62 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -3.71 Total: -16.21 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 1.02 Total: -34.85 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.43 Total: -20.64 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.10 Total: 16.50 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.65 -4.95 -35.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260083621.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.784 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds