Wall clock time and date at job start Mon Mar 30 2020 04:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86799 * 119.99769 * 2 1 4 4 H 1.48496 * 109.47204 * 269.99713 * 3 2 1 5 5 H 1.48498 * 109.47337 * 30.00561 * 3 2 1 6 6 H 1.48506 * 109.46975 * 150.00170 * 3 2 1 7 7 C 1.38824 * 120.00273 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00010 * 159.74727 * 7 2 1 9 9 N 1.36974 * 119.99575 * 339.74697 * 7 2 1 10 10 C 1.38579 * 120.00038 * 318.65323 * 9 7 2 11 11 N 1.32827 * 118.96348 * 179.73695 * 10 9 7 12 12 C 1.32045 * 121.30514 * 179.69565 * 11 10 9 13 13 C 1.39273 * 118.84085 * 0.57447 * 12 11 10 14 14 O 1.34596 * 134.43158 * 179.74372 * 13 12 11 15 15 N 1.41420 * 109.30373 * 179.97438 * 14 13 12 16 16 C 1.29761 * 109.73349 * 0.02562 * 15 14 13 17 17 C 1.40561 * 118.36092 * 359.70395 * 13 12 11 18 18 N 1.32209 * 118.96523 * 0.02562 * 10 9 7 19 19 C 1.46500 * 119.99885 * 138.66278 * 9 7 2 20 20 C 1.53001 * 117.51755 * 356.40290 * 19 9 7 21 21 C 1.52998 * 117.50301 * 65.03248 * 19 9 7 22 22 H 0.96996 * 120.00333 * 357.24796 * 1 2 3 23 23 H 1.08007 * 120.57923 * 180.28239 * 12 11 10 24 24 H 1.08000 * 126.28199 * 179.97438 * 16 15 14 25 25 H 1.09000 * 115.54658 * 210.71272 * 19 9 7 26 26 H 1.08998 * 117.49611 * 214.97474 * 20 19 9 27 27 H 1.08999 * 117.49988 * 359.97438 * 20 19 9 28 28 H 1.08995 * 117.49546 * 359.97438 * 21 19 9 29 29 H 1.09001 * 117.49708 * 144.99766 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4402 0.7000 7 6 2.0097 -1.2022 -0.0005 8 1 3.0396 -1.2309 -0.3243 9 7 1.3883 -2.3519 0.4096 10 6 0.5555 -2.3323 1.5171 11 7 -0.0407 -3.4579 1.8935 12 6 -0.8386 -3.4932 2.9451 13 6 -1.0616 -2.3183 3.6590 14 8 -1.7940 -1.9983 4.7419 15 7 -1.6351 -0.6216 5.0237 16 6 -0.8338 -0.0862 4.1547 17 6 -0.4192 -1.1441 3.2297 18 7 0.3749 -1.1925 2.1622 19 6 1.6043 -3.6024 -0.3224 20 6 2.4668 -3.5427 -1.5847 21 6 3.0161 -4.1919 -0.3129 22 1 -0.4850 0.8390 0.0403 23 1 -1.3139 -4.4160 3.2435 24 1 -0.5284 0.9491 4.1199 25 1 0.7673 -4.3006 -0.3174 26 1 2.1972 -4.2017 -2.4100 27 1 2.8734 -2.5728 -1.8710 28 1 3.7844 -3.6491 0.2377 29 1 3.1080 -5.2780 -0.3015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260100610.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:36 Heat of formation + Delta-G solvation = 154.562007 kcal Electronic energy + Delta-G solvation = -17630.327576 eV Core-core repulsion = 14751.976581 eV Total energy + Delta-G solvation = -2878.350995 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.16553 -38.86658 -37.07043 -34.01577 -33.32456 -31.71672 -31.38424 -28.75527 -25.42117 -23.79313 -22.72712 -21.70490 -21.48753 -20.35796 -18.48640 -17.43299 -16.62440 -15.64020 -15.49942 -15.37595 -14.62605 -14.00511 -13.66655 -13.33010 -13.26347 -12.71258 -12.23579 -11.54872 -11.36886 -11.32901 -11.10201 -11.01167 -10.92476 -10.45178 -10.41553 -10.17149 -9.74354 -9.46647 -8.95409 -8.67595 -7.94104 -6.84296 -6.24995 -4.04850 1.22887 2.11786 2.73485 3.07517 3.16998 3.24209 3.27806 3.85766 4.28928 4.52882 4.66731 4.83532 4.87474 5.08772 5.20221 5.34354 5.59399 5.70177 5.80229 5.98826 6.08156 6.18454 6.30932 6.41245 6.61391 6.78840 6.94878 7.35223 7.66537 7.77541 7.98504 8.62534 8.84558 9.33067 9.74688 10.65992 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.019800 B = 0.011043 C = 0.007501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.782036 B = 2535.011631 C = 3731.969550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.075 3.925 3 Si 0.916 3.084 4 H -0.281 1.281 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.328 4.328 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.524 3.476 11 N -0.534 5.534 12 C 0.202 3.798 13 C -0.152 4.152 14 O -0.093 6.093 15 N -0.288 5.288 16 C 0.109 3.891 17 C 0.113 3.887 18 N -0.458 5.458 19 C 0.100 3.900 20 C -0.175 4.175 21 C -0.202 4.202 22 H 0.268 0.732 23 H 0.163 0.837 24 H 0.206 0.794 25 H 0.116 0.884 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.090 0.910 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.406 -3.189 1.654 3.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.137 4.137 3 Si 0.742 3.258 4 H -0.207 1.207 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.456 4.456 8 H 0.107 0.893 9 N -0.072 5.072 10 C 0.173 3.827 11 N -0.258 5.258 12 C 0.023 3.977 13 C -0.215 4.215 14 O -0.104 6.104 15 N -0.030 5.030 16 C -0.094 4.094 17 C -0.037 4.037 18 N -0.186 5.186 19 C -0.006 4.006 20 C -0.213 4.213 21 C -0.242 4.242 22 H 0.079 0.921 23 H 0.181 0.819 24 H 0.223 0.777 25 H 0.133 0.867 26 H 0.106 0.894 27 H 0.125 0.875 28 H 0.109 0.891 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.244 -2.928 1.596 3.559 hybrid contribution 0.135 0.977 0.043 0.987 sum 1.379 -1.952 1.639 2.897 Atomic orbital electron populations 1.69933 1.06795 1.28118 1.40070 1.25166 0.94735 0.99539 0.94265 0.86159 0.79918 0.81796 0.77956 1.20703 1.20635 1.19407 1.19053 0.95661 0.84195 1.46648 0.89326 1.41142 1.40684 1.06678 1.18675 1.18949 0.93116 0.82714 0.87889 1.67850 1.12581 1.29563 1.15792 1.21685 0.93171 0.94153 0.88657 1.21328 1.04773 0.99471 0.95963 1.88919 1.60630 1.19910 1.40968 1.79641 1.16043 0.88461 1.18875 1.25750 0.93049 1.00244 0.90367 1.21682 0.97034 0.90273 0.94711 1.67441 1.18942 1.26868 1.05305 1.21514 0.93361 0.89180 0.96537 1.23181 1.04251 1.02772 0.91112 1.23321 0.99359 0.99302 1.02190 0.92134 0.81944 0.77737 0.86665 0.89375 0.87494 0.89128 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.98 11.46 55.49 0.64 -21.34 15 2 C 0.08 1.90 4.19 -17.45 -0.07 1.83 15 3 Si 0.92 19.85 29.60 -169.99 -5.03 14.82 15 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 7 C -0.33 -8.24 8.04 -15.04 -0.12 -8.36 15 8 H 0.09 2.14 7.14 -52.49 -0.37 1.77 15 9 N -0.38 -9.15 2.94 -109.91 -0.32 -9.47 15 10 C 0.52 13.06 7.49 -322.49 -2.42 10.64 15 11 N -0.53 -11.91 9.26 -13.75 -0.13 -12.04 15 12 C 0.20 3.97 11.35 -17.08 -0.19 3.78 15 13 C -0.15 -3.19 7.55 -38.32 -0.29 -3.48 15 14 O -0.09 -1.88 12.06 8.28 0.10 -1.78 15 15 N -0.29 -5.50 12.81 31.93 0.41 -5.09 15 16 C 0.11 2.03 12.32 -15.09 -0.19 1.85 15 17 C 0.11 2.54 7.55 -83.09 -0.63 1.91 15 18 N -0.46 -11.52 6.93 -10.70 -0.07 -11.60 15 19 C 0.10 2.04 6.12 -67.93 -0.42 1.63 15 20 C -0.18 -3.06 9.79 -26.73 -0.26 -3.32 15 21 C -0.20 -3.46 10.35 -26.73 -0.28 -3.73 15 22 H 0.27 6.93 8.31 -40.82 -0.34 6.59 15 23 H 0.16 2.44 8.06 -52.48 -0.42 2.02 15 24 H 0.21 3.01 8.06 -52.49 -0.42 2.59 15 25 H 0.12 2.30 7.70 -51.93 -0.40 1.90 15 26 H 0.09 1.31 8.14 -51.93 -0.42 0.88 15 27 H 0.11 2.00 6.67 -51.93 -0.35 1.65 15 28 H 0.09 1.63 8.14 -51.93 -0.42 1.21 15 29 H 0.09 1.27 8.14 -51.93 -0.42 0.85 15 LS Contribution 261.48 15.07 3.94 3.94 Total: -1.00 -29.34 261.48 -7.70 -37.04 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -2.37 Total: 2.78 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -4.86 Total: 2.74 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: 0.52 Total: -59.55 kcal Atomic # 8 Polarization: -1.88 SS G_CDS: 0.10 Total: -1.78 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.34 -7.70 -37.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260100610.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.605 kcal (2) G-P(sol) polarization free energy of solvation -29.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds