Wall clock time and date at job start Mon Mar 30 2020 03:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00158 * 2 1 4 4 H 1.48494 * 109.47149 * 270.00490 * 3 2 1 5 5 H 1.48505 * 109.46738 * 30.00355 * 3 2 1 6 6 H 1.48495 * 109.47366 * 150.00207 * 3 2 1 7 7 C 1.38813 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99879 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00090 * 359.97438 * 7 2 1 10 10 C 1.47570 * 127.96376 * 0.02754 * 9 7 2 11 11 C 1.53210 * 107.96891 * 211.30884 * 10 9 7 12 12 N 1.47195 * 109.12423 * 325.36483 * 11 10 9 13 13 C 1.46494 * 127.29800 * 200.64253 * 12 11 10 14 14 C 1.53774 * 113.61796 * 39.13559 * 13 12 11 15 15 C 1.53956 * 87.02107 * 220.04707 * 14 13 12 16 16 C 1.53774 * 87.10913 * 25.36311 * 15 14 13 17 17 S 1.66958 * 105.39390 * 20.62052 * 12 11 10 18 18 O 1.42095 * 107.11130 * 245.73756 * 17 12 11 19 19 O 1.42098 * 107.11190 * 110.90423 * 17 12 11 20 20 H 0.96997 * 119.99368 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.77251 * 330.94427 * 10 9 7 22 22 H 1.08995 * 109.76793 * 91.67626 * 10 9 7 23 23 H 1.09000 * 109.54510 * 85.28262 * 11 10 9 24 24 H 1.09004 * 109.54519 * 205.42016 * 11 10 9 25 25 H 1.09002 * 112.85042 * 170.33585 * 13 12 11 26 26 H 1.08997 * 113.61628 * 334.56622 * 14 13 12 27 27 H 1.09002 * 113.61843 * 105.46782 * 14 13 12 28 28 H 1.09000 * 113.53764 * 270.80931 * 15 14 13 29 29 H 1.09008 * 113.66478 * 139.93384 * 15 14 13 30 30 H 1.08998 * 113.61299 * 220.08713 * 16 15 14 31 31 H 1.08997 * 113.69549 * 89.19943 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1358 -2.5926 -0.0006 11 6 -0.4314 -3.8912 0.7568 12 7 0.6522 -4.8546 0.5033 13 6 0.6005 -6.3102 0.6599 14 6 -0.7315 -6.9315 0.2077 15 6 -0.6238 -7.8565 1.4337 16 6 0.2410 -6.7642 2.0845 17 16 1.9524 -3.9366 -0.0010 18 8 2.2090 -4.2834 -1.3549 19 8 2.9288 -3.9929 1.0298 20 1 -0.4849 0.8401 0.0004 21 1 -0.6253 -1.7556 0.4976 22 1 -0.4967 -2.6734 -1.0259 23 1 -0.4928 -3.6843 1.8252 24 1 -1.3779 -4.3073 0.4115 25 1 1.4775 -6.8114 0.2502 26 1 -1.5735 -6.2410 0.2544 27 1 -0.6668 -7.4580 -0.7446 28 1 -0.0825 -8.7815 1.2350 29 1 -1.5739 -8.0218 1.9419 30 1 1.0898 -7.1556 2.6453 31 1 -0.3333 -6.0272 2.6457 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260144254.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:27 Heat of formation + Delta-G solvation = -24.046475 kcal Electronic energy + Delta-G solvation = -16859.112150 eV Core-core repulsion = 14076.167310 eV Total energy + Delta-G solvation = -2782.944840 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.91911 -36.44417 -36.04673 -34.73952 -33.65058 -31.09069 -28.09558 -25.54566 -24.60797 -24.13457 -21.88024 -19.39635 -18.54943 -17.55206 -16.81629 -15.96942 -15.31514 -15.24857 -14.69974 -14.19127 -13.83897 -13.29943 -12.86452 -12.74568 -12.37822 -12.19319 -11.67620 -11.53536 -11.14389 -11.12072 -10.99114 -10.95503 -10.75381 -10.59145 -10.48978 -10.35508 -10.06327 -9.71909 -9.38624 -8.46843 -7.98635 -6.07318 -3.75543 1.46575 3.27015 3.31640 3.35416 3.68548 4.12158 4.46680 4.60106 4.69316 4.87964 4.98025 5.05075 5.15720 5.33431 5.59751 5.67589 5.72425 5.85079 5.91162 6.00604 6.08921 6.11928 6.19237 6.46380 6.76755 6.79019 7.12787 7.36633 7.71393 8.53034 9.07479 9.46895 10.94504 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.044674 B = 0.007613 C = 0.007092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.614942 B = 3677.038785 C = 3947.336554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.926 3.074 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.258 4.258 8 H 0.099 0.901 9 N -0.853 5.853 10 C 0.073 3.927 11 C 0.071 3.929 12 N -1.000 6.000 13 C 0.170 3.830 14 C -0.149 4.149 15 C -0.141 4.141 16 C -0.153 4.153 17 S 2.744 3.256 18 O -0.999 6.999 19 O -1.006 7.006 20 H 0.264 0.736 21 H 0.160 0.840 22 H 0.054 0.946 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.540 -10.191 2.650 11.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.176 4.176 3 Si 0.754 3.246 4 H -0.206 1.206 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.387 4.387 8 H 0.117 0.883 9 N -0.692 5.692 10 C -0.054 4.054 11 C -0.055 4.055 12 N -0.840 5.840 13 C 0.064 3.936 14 C -0.189 4.189 15 C -0.179 4.179 16 C -0.193 4.193 17 S 2.758 3.242 18 O -0.982 6.982 19 O -0.988 6.988 20 H 0.075 0.925 21 H 0.177 0.823 22 H 0.073 0.927 23 H 0.085 0.915 24 H 0.101 0.899 25 H 0.122 0.878 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.599 -10.376 2.404 11.243 hybrid contribution -0.210 0.930 0.132 0.962 sum -3.809 -9.446 2.537 10.496 Atomic orbital electron populations 1.69413 1.05396 1.26300 1.54237 1.25028 0.95789 0.98451 0.98365 0.85931 0.79015 0.81452 0.78222 1.20605 1.20945 1.19723 1.18964 0.90758 0.80958 1.48039 0.88343 1.52569 1.10792 1.17601 1.88222 1.22742 0.85717 0.96300 1.00690 1.22510 0.92935 0.88672 1.01429 1.57606 1.30073 1.11956 1.84330 1.21944 0.98253 0.77345 0.96107 1.23387 0.98639 0.98566 0.98291 1.22740 1.00417 0.97173 0.97588 1.23437 1.00192 0.98227 0.97415 1.03401 0.71834 0.74489 0.74492 1.93556 1.83531 1.84022 1.37045 1.93499 1.60118 1.86772 1.58384 0.92478 0.82333 0.92738 0.91456 0.89913 0.87808 0.89359 0.91057 0.90137 0.91160 0.91163 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.09 10.21 55.49 0.57 -23.53 16 2 C 0.02 0.63 5.49 -17.43 -0.10 0.54 16 3 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.26 -7.07 10.39 -15.06 -0.16 -7.23 16 8 H 0.10 2.64 7.83 -52.49 -0.41 2.23 16 9 N -0.85 -21.73 3.51 -59.06 -0.21 -21.94 16 10 C 0.07 1.60 6.07 -3.35 -0.02 1.58 16 11 C 0.07 1.23 6.68 -3.55 -0.02 1.21 16 12 N -1.00 -18.45 3.57 -105.81 -0.38 -18.82 16 13 C 0.17 2.53 4.79 -67.13 -0.32 2.21 16 14 C -0.15 -1.78 7.71 -25.83 -0.20 -1.98 16 15 C -0.14 -1.42 8.09 -25.83 -0.21 -1.63 16 16 C -0.15 -1.92 7.80 -25.92 -0.20 -2.12 16 17 S 2.74 64.36 6.10 -107.50 -0.66 63.71 16 18 O -1.00 -25.54 18.17 -57.05 -1.04 -26.58 16 19 O -1.01 -25.94 18.16 -57.05 -1.04 -26.98 16 20 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 21 H 0.16 3.72 5.55 -51.93 -0.29 3.44 16 22 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 23 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 24 H 0.08 1.18 6.65 -51.93 -0.35 0.83 16 25 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 26 H 0.09 1.04 6.53 -51.93 -0.34 0.70 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 1.12 7.99 -51.93 -0.41 0.70 16 LS Contribution 267.47 15.07 4.03 4.03 Total: -1.00 -32.22 267.47 -8.86 -41.08 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -3.89 Total: 0.67 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -1.23 Total: -7.42 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: -0.02 Total: -64.29 kcal Atomic # 8 Polarization: -51.48 SS G_CDS: -2.07 Total: -53.56 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 64.36 SS G_CDS: -0.66 Total: 63.71 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.22 -8.86 -41.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260144254.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.036 kcal (2) G-P(sol) polarization free energy of solvation -32.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds