Wall clock time and date at job start Mon Mar 30 2020 03:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00158 * 2 1 4 4 H 1.48494 * 109.47149 * 270.00490 * 3 2 1 5 5 H 1.48505 * 109.46738 * 30.00355 * 3 2 1 6 6 H 1.48495 * 109.47366 * 150.00207 * 3 2 1 7 7 C 1.38813 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99879 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00090 * 359.97438 * 7 2 1 10 10 C 1.47570 * 127.96376 * 0.02754 * 9 7 2 11 11 C 1.53210 * 107.96891 * 211.30884 * 10 9 7 12 12 N 1.47195 * 109.12423 * 325.36483 * 11 10 9 13 13 C 1.46494 * 127.29800 * 200.64253 * 12 11 10 14 14 C 1.53774 * 113.61796 * 39.13559 * 13 12 11 15 15 C 1.53956 * 87.02107 * 220.04707 * 14 13 12 16 16 C 1.53774 * 87.10913 * 25.36311 * 15 14 13 17 17 S 1.66958 * 105.39390 * 20.62052 * 12 11 10 18 18 O 1.42095 * 107.11130 * 245.73756 * 17 12 11 19 19 O 1.42098 * 107.11190 * 110.90423 * 17 12 11 20 20 H 0.96997 * 119.99368 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.77251 * 330.94427 * 10 9 7 22 22 H 1.08995 * 109.76793 * 91.67626 * 10 9 7 23 23 H 1.09000 * 109.54510 * 85.28262 * 11 10 9 24 24 H 1.09004 * 109.54519 * 205.42016 * 11 10 9 25 25 H 1.09002 * 112.85042 * 170.33585 * 13 12 11 26 26 H 1.08997 * 113.61628 * 334.56622 * 14 13 12 27 27 H 1.09002 * 113.61843 * 105.46782 * 14 13 12 28 28 H 1.09000 * 113.53764 * 270.80931 * 15 14 13 29 29 H 1.09008 * 113.66478 * 139.93384 * 15 14 13 30 30 H 1.08998 * 113.61299 * 220.08713 * 16 15 14 31 31 H 1.08997 * 113.69549 * 89.19943 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1358 -2.5926 -0.0006 11 6 -0.4314 -3.8912 0.7568 12 7 0.6522 -4.8546 0.5033 13 6 0.6005 -6.3102 0.6599 14 6 -0.7315 -6.9315 0.2077 15 6 -0.6238 -7.8565 1.4337 16 6 0.2410 -6.7642 2.0845 17 16 1.9524 -3.9366 -0.0010 18 8 2.2090 -4.2834 -1.3549 19 8 2.9288 -3.9929 1.0298 20 1 -0.4849 0.8401 0.0004 21 1 -0.6253 -1.7556 0.4976 22 1 -0.4967 -2.6734 -1.0259 23 1 -0.4928 -3.6843 1.8252 24 1 -1.3779 -4.3073 0.4115 25 1 1.4775 -6.8114 0.2502 26 1 -1.5735 -6.2410 0.2544 27 1 -0.6668 -7.4580 -0.7446 28 1 -0.0825 -8.7815 1.2350 29 1 -1.5739 -8.0218 1.9419 30 1 1.0898 -7.1556 2.6453 31 1 -0.3333 -6.0272 2.6457 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260144254.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:27 Heat of formation + Delta-G solvation = -47.746406 kcal Electronic energy + Delta-G solvation = -16860.139856 eV Core-core repulsion = 14076.167310 eV Total energy + Delta-G solvation = -2783.972546 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.03751 -38.13688 -37.97992 -36.69730 -35.31182 -32.96808 -29.72183 -26.53434 -26.36112 -25.42164 -23.48833 -20.83651 -19.95384 -19.41406 -18.35042 -17.83418 -17.06459 -16.51160 -16.12036 -15.94946 -15.55007 -15.06926 -14.31840 -14.02396 -13.83787 -13.43689 -13.16301 -13.08560 -13.00943 -12.97954 -12.89675 -12.71802 -12.34497 -12.12510 -11.83563 -11.68555 -11.50043 -11.23022 -11.11243 -10.06442 -9.76351 -8.06149 -5.81906 -0.31843 1.47867 1.49148 1.59176 2.04329 2.30644 2.59172 3.10232 3.28975 3.63289 3.73166 3.83150 3.98521 4.00876 4.11097 4.35822 4.53949 4.68388 4.90429 4.95956 4.99052 5.10117 5.15001 5.16273 5.23519 5.35770 5.58590 5.80062 5.86549 6.53289 7.06205 7.45653 8.93347 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.044674 B = 0.007613 C = 0.007092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.614942 B = 3677.038785 C = 3947.336554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.987 3.013 4 H -0.276 1.276 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.297 4.297 8 H 0.089 0.911 9 N -0.875 5.875 10 C 0.070 3.930 11 C 0.081 3.919 12 N -0.986 5.986 13 C 0.138 3.862 14 C -0.144 4.144 15 C -0.121 4.121 16 C -0.154 4.154 17 S 2.752 3.248 18 O -1.032 7.032 19 O -1.034 7.034 20 H 0.267 0.733 21 H 0.145 0.855 22 H 0.046 0.954 23 H 0.080 0.920 24 H 0.124 0.876 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.919 -11.190 3.319 13.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.214 4.214 3 Si 0.811 3.189 4 H -0.202 1.202 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.426 4.426 8 H 0.107 0.893 9 N -0.714 5.714 10 C -0.057 4.057 11 C -0.045 4.045 12 N -0.830 5.830 13 C 0.034 3.966 14 C -0.183 4.183 15 C -0.159 4.159 16 C -0.193 4.193 17 S 2.767 3.233 18 O -1.014 7.014 19 O -1.017 7.017 20 H 0.078 0.922 21 H 0.162 0.838 22 H 0.064 0.936 23 H 0.098 0.902 24 H 0.142 0.858 25 H 0.122 0.878 26 H 0.112 0.888 27 H 0.098 0.902 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.985 -11.379 3.068 12.796 hybrid contribution 0.176 1.155 -0.098 1.172 sum -4.808 -10.225 2.970 11.683 Atomic orbital electron populations 1.69568 1.06154 1.27129 1.53744 1.25834 0.96824 1.01160 0.97563 0.85030 0.77999 0.77575 0.78305 1.20183 1.19914 1.19457 1.19149 0.90938 0.82410 1.50068 0.89298 1.52591 1.12400 1.17576 1.88793 1.22770 0.83856 0.98368 1.00723 1.22479 0.93880 0.86522 1.01610 1.57334 1.28252 1.13277 1.84164 1.22643 1.00364 0.74797 0.98826 1.23417 0.96480 0.98729 0.99694 1.22698 1.00913 0.96591 0.95736 1.23474 1.00864 0.99105 0.95894 1.02814 0.72452 0.74355 0.73705 1.93507 1.84657 1.84410 1.38796 1.93457 1.61949 1.87224 1.59024 0.92231 0.83783 0.93613 0.90154 0.85790 0.87794 0.88789 0.90203 0.88548 0.89135 0.90968 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.08 10.21 21.65 0.22 -48.86 16 2 C -0.02 -0.81 5.49 84.86 0.47 -0.35 16 3 Si 0.99 42.73 29.55 68.60 2.03 44.75 16 4 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.30 -16.70 10.39 84.03 0.87 -15.82 16 8 H 0.09 4.97 7.83 -2.91 -0.02 4.95 16 9 N -0.88 -45.55 3.51 -340.76 -1.20 -46.75 16 10 C 0.07 3.06 6.07 86.24 0.52 3.59 16 11 C 0.08 2.67 6.68 86.32 0.58 3.24 16 12 N -0.99 -35.28 3.57 -488.67 -1.75 -37.02 16 13 C 0.14 3.83 4.79 45.52 0.22 4.05 16 14 C -0.14 -2.92 7.71 31.18 0.24 -2.68 16 15 C -0.12 -1.94 8.09 31.18 0.25 -1.69 16 16 C -0.15 -3.41 7.80 31.12 0.24 -3.17 16 17 S 2.75 131.31 6.10 -56.49 -0.34 130.97 16 18 O -1.03 -53.98 18.17 -128.12 -2.33 -56.30 16 19 O -1.03 -54.54 18.16 -128.12 -2.33 -56.87 16 20 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 21 H 0.14 6.81 5.55 -2.39 -0.01 6.80 16 22 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.12 3.10 6.65 -2.39 -0.02 3.08 16 25 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 26 H 0.09 1.82 6.53 -2.39 -0.02 1.80 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 1.95 7.99 -2.39 -0.02 1.93 16 Total: -1.00 -70.24 267.47 -1.17 -71.41 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 1.13 Total: 11.51 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 3.39 Total: -12.83 kcal Atomic # 7 Polarization: -129.91 SS G_CDS: -2.72 Total: -132.63 kcal Atomic # 8 Polarization: -108.52 SS G_CDS: -4.65 Total: -113.17 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: 131.31 SS G_CDS: -0.34 Total: 130.97 kcal Total: -70.24 -1.17 -71.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260144254.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.663 kcal (2) G-P(sol) polarization free energy of solvation -70.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds