Wall clock time and date at job start Mon Mar 30 2020 03:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99861 * 2 1 4 4 H 1.48502 * 109.46563 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47265 * 299.99867 * 3 2 1 6 6 H 1.48497 * 109.47042 * 59.99801 * 3 2 1 7 7 C 1.37875 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99554 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00083 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47290 * 179.97438 * 9 7 2 11 11 C 1.35883 * 119.69192 * 90.00293 * 10 9 7 12 12 N 1.29835 * 123.34343 * 180.28357 * 11 10 9 13 13 C 1.35701 * 121.57498 * 359.43705 * 12 11 10 14 14 C 1.39521 * 121.63289 * 180.25205 * 13 12 11 15 15 C 1.37826 * 119.83241 * 180.30818 * 14 13 12 16 16 C 1.38617 * 120.91809 * 0.02562 * 15 14 13 17 17 C 1.38488 * 120.49440 * 359.97438 * 16 15 14 18 18 O 1.35682 * 120.31530 * 179.97438 * 17 16 15 19 19 C 1.39874 * 119.36686 * 0.02562 * 17 16 15 20 20 C 1.35338 * 119.69569 * 270.02568 * 10 9 7 21 21 O 1.21751 * 121.28468 * 0.02562 * 20 10 9 22 22 H 0.96999 * 119.99887 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46883 * 60.00233 * 9 7 2 24 24 H 1.09001 * 109.47789 * 300.00050 * 9 7 2 25 25 H 1.08002 * 118.32490 * 359.97438 * 11 10 9 26 26 H 1.07992 * 120.08559 * 0.33541 * 14 13 12 27 27 H 1.07995 * 119.53844 * 180.02562 * 15 14 13 28 28 H 1.08001 * 119.75049 * 180.02562 * 16 15 14 29 29 H 0.96692 * 114.00244 * 270.01133 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 2.6412 -4.1238 1.1818 12 7 3.4873 -5.1051 1.2642 13 6 3.9911 -5.7040 0.1556 14 6 4.8964 -6.7620 0.2429 15 6 5.3897 -7.3390 -0.9075 16 6 4.9995 -6.8827 -2.1569 17 6 4.1024 -5.8342 -2.2735 18 8 3.7234 -5.3902 -3.4983 19 6 3.5915 -5.2366 -1.1166 20 6 2.6381 -4.1225 -1.1743 21 8 2.2542 -3.6734 -2.2389 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5574 -0.8880 24 1 0.6246 -2.5564 0.8919 25 1 2.2705 -3.6883 2.0979 26 1 5.2095 -7.1283 1.2094 27 1 6.0898 -8.1580 -0.8344 28 1 5.3976 -7.3490 -3.0461 29 1 4.2847 -4.6873 -3.8529 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260182242.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:02 Heat of formation + Delta-G solvation = -30.201600 kcal Electronic energy + Delta-G solvation = -17226.015769 eV Core-core repulsion = 14307.360071 eV Total energy + Delta-G solvation = -2918.655697 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.05232 -38.60514 -37.42631 -35.87652 -34.10305 -32.51769 -30.36516 -29.41279 -27.66706 -24.34264 -24.32184 -22.37393 -21.59527 -18.86690 -18.25912 -17.20074 -16.93540 -16.43451 -15.30702 -15.08582 -14.99821 -14.63241 -14.29351 -13.72225 -13.60252 -12.82034 -12.53489 -12.26884 -11.94508 -11.74705 -11.67758 -11.08708 -10.90812 -10.83208 -10.43811 -10.09339 -9.56217 -9.37881 -9.09560 -8.76922 -8.67901 -7.59044 -6.30238 -4.38123 0.87315 0.98870 2.54941 3.13521 3.17934 3.26158 3.28092 3.35636 4.16252 4.25827 4.38990 4.44466 4.72418 4.98980 5.06098 5.12184 5.34709 5.49738 5.69940 5.94152 6.15433 6.30133 6.42938 6.61037 6.70186 6.97319 7.10122 7.42834 7.63358 7.81665 7.82957 8.32261 8.44461 8.65402 9.28890 10.78268 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.032865 B = 0.006598 C = 0.006103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.772318 B = 4242.863071 C = 4586.945032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.223 3.777 10 N -0.526 5.526 11 C 0.403 3.597 12 N -0.562 5.562 13 C 0.183 3.817 14 C -0.136 4.136 15 C -0.063 4.063 16 C -0.188 4.188 17 C 0.188 3.812 18 O -0.482 6.482 19 C -0.236 4.236 20 C 0.541 3.459 21 O -0.491 6.491 22 H 0.268 0.732 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.198 0.802 26 H 0.136 0.864 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.756 -10.900 0.674 13.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.104 3.896 10 N -0.243 5.243 11 C 0.117 3.883 12 N -0.286 5.286 13 C 0.071 3.929 14 C -0.156 4.156 15 C -0.082 4.082 16 C -0.207 4.207 17 C 0.141 3.859 18 O -0.293 6.293 19 C -0.243 4.243 20 C 0.332 3.668 21 O -0.364 6.364 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.215 0.785 26 H 0.154 0.846 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 8.194 -11.244 0.641 13.928 hybrid contribution 0.485 1.636 -0.779 1.876 sum 8.680 -9.608 -0.138 12.949 Atomic orbital electron populations 1.69924 1.06059 1.27622 1.48828 1.24915 0.94956 0.99494 0.94221 0.86315 0.79948 0.82603 0.77880 1.19645 1.20615 1.20577 1.21259 0.93437 0.89833 1.53403 0.91987 1.19922 0.87417 0.81669 1.00542 1.47197 1.39657 1.31570 1.05915 1.24836 0.86246 0.86692 0.90571 1.68813 1.17120 1.13828 1.28887 1.18803 0.93349 0.93526 0.87187 1.20747 0.98936 0.96734 0.99154 1.20987 0.97665 0.98150 0.91447 1.21295 1.00662 1.00253 0.98512 1.18186 0.91334 0.92514 0.83859 1.84711 1.57320 1.57731 1.29501 1.21241 1.05970 1.01991 0.95140 1.18108 0.81768 0.82756 0.84126 1.90856 1.56727 1.60650 1.28152 0.92249 0.92266 0.92948 0.78516 0.84643 0.85132 0.85099 0.74696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.70 13.29 55.43 0.74 -23.97 15 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 15 3 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 15 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 7 C -0.54 -14.40 9.38 -34.44 -0.32 -14.72 15 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 15 9 C 0.22 5.42 5.12 -5.20 -0.03 5.39 15 10 N -0.53 -11.23 2.59 -120.25 -0.31 -11.54 15 11 C 0.40 7.15 11.41 -90.15 -1.03 6.12 15 12 N -0.56 -9.79 10.38 -12.01 -0.12 -9.92 15 13 C 0.18 3.17 6.63 -84.51 -0.56 2.61 15 14 C -0.14 -1.87 10.02 -39.25 -0.39 -2.27 15 15 C -0.06 -0.74 9.99 -39.59 -0.40 -1.13 15 16 C -0.19 -2.46 9.97 -39.35 -0.39 -2.85 15 17 C 0.19 3.14 6.72 -38.88 -0.26 2.88 15 18 O -0.48 -8.04 11.88 -39.11 -0.46 -8.51 15 19 C -0.24 -4.52 5.90 -104.68 -0.62 -5.14 15 20 C 0.54 12.15 7.65 -12.57 -0.10 12.05 15 21 O -0.49 -12.47 15.21 -15.22 -0.23 -12.70 15 22 H 0.27 7.02 8.31 -40.82 -0.34 6.68 15 23 H 0.06 1.62 7.46 -51.93 -0.39 1.23 15 24 H 0.05 1.21 7.99 -51.93 -0.42 0.80 15 25 H 0.20 2.81 7.99 -52.49 -0.42 2.39 15 26 H 0.14 1.58 8.06 -52.49 -0.42 1.16 15 27 H 0.13 1.05 8.06 -52.49 -0.42 0.63 15 28 H 0.13 1.37 8.06 -52.49 -0.42 0.95 15 29 H 0.40 5.04 9.06 45.56 0.41 5.45 15 LS Contribution 265.25 15.07 4.00 4.00 Total: -1.00 -32.13 265.25 -7.23 -39.37 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -1.62 Total: 2.83 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -4.19 Total: 4.68 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.30 Total: -45.43 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.70 Total: -21.21 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.13 -7.23 -39.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260182242.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.164 kcal (2) G-P(sol) polarization free energy of solvation -32.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds