Wall clock time and date at job start Mon Mar 30 2020 03:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99861 * 2 1 4 4 H 1.48502 * 109.46563 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47265 * 299.99867 * 3 2 1 6 6 H 1.48497 * 109.47042 * 59.99801 * 3 2 1 7 7 C 1.37875 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99554 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00083 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47290 * 179.97438 * 9 7 2 11 11 C 1.35883 * 119.69192 * 90.00293 * 10 9 7 12 12 N 1.29835 * 123.34343 * 180.28357 * 11 10 9 13 13 C 1.35701 * 121.57498 * 359.43705 * 12 11 10 14 14 C 1.39521 * 121.63289 * 180.25205 * 13 12 11 15 15 C 1.37826 * 119.83241 * 180.30818 * 14 13 12 16 16 C 1.38617 * 120.91809 * 0.02562 * 15 14 13 17 17 C 1.38488 * 120.49440 * 359.97438 * 16 15 14 18 18 O 1.35682 * 120.31530 * 179.97438 * 17 16 15 19 19 C 1.39874 * 119.36686 * 0.02562 * 17 16 15 20 20 C 1.35338 * 119.69569 * 270.02568 * 10 9 7 21 21 O 1.21751 * 121.28468 * 0.02562 * 20 10 9 22 22 H 0.96999 * 119.99887 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46883 * 60.00233 * 9 7 2 24 24 H 1.09001 * 109.47789 * 300.00050 * 9 7 2 25 25 H 1.08002 * 118.32490 * 359.97438 * 11 10 9 26 26 H 1.07992 * 120.08559 * 0.33541 * 14 13 12 27 27 H 1.07995 * 119.53844 * 180.02562 * 15 14 13 28 28 H 1.08001 * 119.75049 * 180.02562 * 16 15 14 29 29 H 0.96692 * 114.00244 * 270.01133 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 2.6412 -4.1238 1.1818 12 7 3.4873 -5.1051 1.2642 13 6 3.9911 -5.7040 0.1556 14 6 4.8964 -6.7620 0.2429 15 6 5.3897 -7.3390 -0.9075 16 6 4.9995 -6.8827 -2.1569 17 6 4.1024 -5.8342 -2.2735 18 8 3.7234 -5.3902 -3.4983 19 6 3.5915 -5.2366 -1.1166 20 6 2.6381 -4.1225 -1.1743 21 8 2.2542 -3.6734 -2.2389 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5574 -0.8880 24 1 0.6246 -2.5564 0.8919 25 1 2.2705 -3.6883 2.0979 26 1 5.2095 -7.1283 1.2094 27 1 6.0898 -8.1580 -0.8344 28 1 5.3976 -7.3490 -3.0461 29 1 4.2847 -4.6873 -3.8529 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260182242.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:02 Heat of formation + Delta-G solvation = -51.515865 kcal Electronic energy + Delta-G solvation = -17226.940024 eV Core-core repulsion = 14307.360071 eV Total energy + Delta-G solvation = -2919.579953 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.50676 -39.92595 -38.91648 -37.28025 -35.75209 -34.35340 -31.70928 -30.68819 -29.48965 -26.01946 -25.68373 -24.03197 -22.89343 -20.16582 -19.65851 -18.92617 -18.58066 -17.94563 -16.81000 -16.75661 -16.34177 -15.98562 -15.84364 -15.15726 -14.97405 -14.49708 -14.21233 -13.71959 -13.40344 -13.35860 -13.01850 -12.74419 -12.68886 -12.37138 -12.14847 -11.83470 -11.02257 -10.98779 -10.74177 -10.70767 -10.02093 -8.95871 -8.34751 -6.50920 -0.40592 -0.24643 1.13898 1.36165 1.37999 1.49195 1.70791 1.88096 2.33174 2.89329 2.97337 3.13560 3.16561 3.37785 3.91703 3.97868 4.07890 4.33846 4.55075 4.70373 4.75131 4.95984 5.11915 5.20447 5.33757 5.38407 5.57032 5.72383 5.80081 5.85618 6.53323 6.69050 6.78503 6.93648 7.20285 8.73472 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.032865 B = 0.006598 C = 0.006103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.772318 B = 4242.863071 C = 4586.945032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.021 3.979 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.554 4.554 8 H 0.052 0.948 9 C 0.240 3.760 10 N -0.534 5.534 11 C 0.389 3.611 12 N -0.547 5.547 13 C 0.153 3.847 14 C -0.129 4.129 15 C -0.041 4.041 16 C -0.166 4.166 17 C 0.163 3.837 18 O -0.499 6.499 19 C -0.263 4.263 20 C 0.524 3.476 21 O -0.544 6.544 22 H 0.272 0.728 23 H 0.017 0.983 24 H 0.061 0.939 25 H 0.228 0.772 26 H 0.163 0.837 27 H 0.185 0.815 28 H 0.166 0.834 29 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.378 -12.665 1.562 17.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.180 4.180 3 Si 0.795 3.205 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.592 4.592 8 H 0.070 0.930 9 C 0.119 3.881 10 N -0.252 5.252 11 C 0.103 3.897 12 N -0.269 5.269 13 C 0.042 3.958 14 C -0.148 4.148 15 C -0.060 4.060 16 C -0.185 4.185 17 C 0.116 3.884 18 O -0.312 6.312 19 C -0.270 4.270 20 C 0.318 3.682 21 O -0.421 6.421 22 H 0.081 0.919 23 H 0.035 0.965 24 H 0.079 0.921 25 H 0.244 0.756 26 H 0.181 0.819 27 H 0.202 0.798 28 H 0.183 0.817 29 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 10.858 -13.058 1.575 17.055 hybrid contribution -0.210 1.981 -1.082 2.267 sum 10.647 -11.077 0.493 15.372 Atomic orbital electron populations 1.70016 1.07389 1.28708 1.49465 1.25754 0.95793 1.02836 0.93663 0.85315 0.78519 0.78407 0.78265 1.19527 1.20638 1.18901 1.21454 0.93095 0.91162 1.53520 0.92959 1.19456 0.87555 0.82290 0.98755 1.47049 1.39790 1.31303 1.07057 1.25393 0.86868 0.87239 0.90197 1.68839 1.16075 1.12955 1.29070 1.19231 0.95017 0.95237 0.86279 1.21186 0.97174 0.94994 1.01426 1.21599 0.96630 0.97984 0.89738 1.21736 0.98158 0.97889 1.00719 1.18571 0.92782 0.93986 0.83072 1.84669 1.58509 1.58318 1.29681 1.21301 1.06530 1.01909 0.97242 1.18818 0.82110 0.83503 0.83726 1.90795 1.58956 1.62638 1.29714 0.91856 0.96489 0.92064 0.75635 0.81937 0.79792 0.81694 0.73429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.33 13.29 21.45 0.28 -52.04 15 2 C 0.02 1.13 5.46 84.65 0.46 1.59 15 3 Si 0.97 43.05 29.54 68.60 2.03 45.08 15 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 15 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 15 6 H -0.26 -10.99 7.11 99.48 0.71 -10.28 15 7 C -0.55 -30.53 9.38 25.60 0.24 -30.29 15 8 H 0.05 2.92 7.81 -2.91 -0.02 2.89 15 9 C 0.24 12.30 5.12 85.63 0.44 12.74 15 10 N -0.53 -23.89 2.59 -652.23 -1.69 -25.58 15 11 C 0.39 13.92 11.41 180.18 2.06 15.97 15 12 N -0.55 -18.53 10.38 -191.91 -1.99 -20.52 15 13 C 0.15 5.09 6.63 39.61 0.26 5.35 15 14 C -0.13 -3.01 10.02 22.48 0.23 -2.78 15 15 C -0.04 -0.72 9.99 22.26 0.22 -0.50 15 16 C -0.17 -3.67 9.97 22.42 0.22 -3.45 15 17 C 0.16 5.30 6.72 22.73 0.15 5.45 15 18 O -0.50 -16.94 11.88 -70.53 -0.84 -17.77 15 19 C -0.26 -10.16 5.90 -19.90 -0.12 -10.28 15 20 C 0.52 24.84 7.65 86.38 0.66 25.51 15 21 O -0.54 -29.65 15.21 14.96 0.23 -29.42 15 22 H 0.27 14.50 8.31 -92.71 -0.77 13.73 15 23 H 0.02 1.00 7.46 -2.39 -0.02 0.99 15 24 H 0.06 2.97 7.99 -2.39 -0.02 2.95 15 25 H 0.23 6.37 7.99 -2.91 -0.02 6.35 15 26 H 0.16 2.94 8.06 -2.91 -0.02 2.92 15 27 H 0.18 1.46 8.06 -2.91 -0.02 1.43 15 28 H 0.17 2.56 8.06 -2.91 -0.02 2.54 15 29 H 0.41 10.78 9.06 -74.06 -0.67 10.11 15 Total: -1.00 -73.52 265.25 3.37 -70.15 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.53 Total: 10.80 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 4.83 Total: 19.31 kcal Atomic # 7 Polarization: -94.74 SS G_CDS: -3.40 Total: -98.14 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -0.61 Total: -47.20 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -73.52 3.37 -70.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260182242.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.634 kcal (2) G-P(sol) polarization free energy of solvation -73.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds