Wall clock time and date at job start Mon Mar 30 2020 04:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35872 * 116.99950 * 2 1 4 4 C 1.38262 * 120.20727 * 359.97353 * 3 2 1 5 5 C 1.38741 * 120.76034 * 180.02562 * 4 3 2 6 6 C 1.37859 * 120.63244 * 0.02562 * 5 4 3 7 7 C 1.39375 * 119.63581 * 0.02562 * 6 5 4 8 8 C 1.40074 * 120.20950 * 180.02562 * 3 2 1 9 9 N 1.35577 * 121.62205 * 359.97438 * 8 3 2 10 10 C 1.29818 * 121.63200 * 179.97438 * 9 8 3 11 11 N 1.36272 * 123.28462 * 0.02562 * 10 9 8 12 12 C 1.37085 * 119.72107 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99763 * 150.58386 * 12 11 10 14 14 C 1.39061 * 120.00148 * 330.58640 * 12 11 10 15 15 N 1.31260 * 119.99806 * 342.53819 * 14 12 11 16 16 Si 1.86799 * 119.99934 * 162.53464 * 14 12 11 17 17 H 1.48499 * 109.47016 * 60.00262 * 16 14 12 18 18 H 1.48501 * 109.46844 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47416 * 300.00226 * 16 14 12 20 20 C 1.35341 * 120.55607 * 0.26128 * 11 10 9 21 21 O 1.21727 * 121.28780 * 179.74252 * 20 11 10 22 22 H 1.08995 * 109.47045 * 300.00108 * 1 2 3 23 23 H 1.09002 * 109.47104 * 60.00153 * 1 2 3 24 24 H 1.09001 * 109.46639 * 179.97438 * 1 2 3 25 25 H 1.08005 * 119.62624 * 0.04682 * 4 3 2 26 26 H 1.08000 * 119.68528 * 179.97438 * 5 4 3 27 27 H 1.08007 * 120.18073 * 180.02562 * 6 5 4 28 28 H 1.08002 * 118.35723 * 179.97438 * 10 9 8 29 29 H 0.97001 * 119.99800 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2971 2.3729 -0.0006 5 6 1.9149 3.6151 -0.0011 6 6 3.2899 3.7158 -0.0016 7 6 4.0656 2.5579 -0.0022 8 6 3.4444 1.2891 -0.0005 9 7 4.2188 0.1762 -0.0006 10 6 5.5150 0.2487 -0.0016 11 7 6.1981 1.4278 -0.0021 12 6 7.5689 1.4191 -0.0027 13 1 8.1138 2.2303 -0.4625 14 6 8.2578 0.3658 0.5888 15 7 7.6421 -0.4299 1.4318 16 14 10.0593 0.0834 0.1835 17 1 10.8461 1.2845 0.5626 18 1 10.5581 -1.0933 0.9396 19 1 10.2060 -0.1650 -1.2731 20 6 5.5345 2.6074 0.0036 21 8 6.1312 3.6684 0.0079 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2187 2.3132 -0.0002 26 1 1.3131 4.5119 -0.0019 27 1 3.7632 4.6866 -0.0016 28 1 6.0802 -0.6716 -0.0011 29 1 8.1227 -1.1644 1.8447 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260186173.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:06 Heat of formation + Delta-G solvation = -20.532137 kcal Electronic energy + Delta-G solvation = -17323.089227 eV Core-core repulsion = 14404.852829 eV Total energy + Delta-G solvation = -2918.236398 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.56140 -39.00409 -36.56501 -36.29539 -34.06803 -31.85439 -29.86961 -29.22107 -26.98738 -25.93232 -23.60618 -22.85562 -21.00377 -19.10968 -18.04595 -17.55285 -16.45127 -15.56637 -15.49749 -15.33686 -14.59683 -14.41904 -14.36237 -13.82469 -13.26955 -12.88047 -12.41636 -12.13695 -12.01464 -11.64753 -11.45782 -11.33487 -11.03353 -10.83381 -10.71983 -10.61964 -9.76666 -9.06995 -8.96643 -8.74526 -8.16786 -7.11960 -6.81739 -4.58133 1.39880 1.58922 2.95857 3.01012 3.04614 3.20508 3.60113 3.63605 3.73906 4.30070 4.42848 4.98963 5.06686 5.14848 5.33076 5.34589 5.42526 5.60529 5.70760 5.75645 5.95404 6.20754 6.47480 6.63354 6.88979 6.94628 7.03686 7.17450 7.46917 7.79839 7.92725 8.30215 8.58480 9.16909 9.24171 10.07714 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.034614 B = 0.007161 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.733804 B = 3909.249774 C = 4623.674808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.295 6.295 3 C 0.118 3.882 4 C -0.186 4.186 5 C -0.135 4.135 6 C -0.074 4.074 7 C -0.184 4.184 8 C 0.148 3.852 9 N -0.555 5.555 10 C 0.375 3.625 11 N -0.358 5.358 12 C -0.344 4.344 13 H 0.117 0.883 14 C 0.047 3.953 15 N -0.848 5.848 16 Si 0.944 3.056 17 H -0.265 1.265 18 H -0.276 1.276 19 H -0.263 1.263 20 C 0.499 3.501 21 O -0.546 6.546 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.095 0.905 25 H 0.124 0.876 26 H 0.121 0.879 27 H 0.127 0.873 28 H 0.200 0.800 29 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.689 -0.480 -2.264 8.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.208 6.208 3 C 0.071 3.929 4 C -0.207 4.207 5 C -0.154 4.154 6 C -0.093 4.093 7 C -0.192 4.192 8 C 0.031 3.969 9 N -0.280 5.280 10 C 0.092 3.908 11 N -0.060 5.060 12 C -0.472 4.472 13 H 0.135 0.865 14 C -0.163 4.163 15 N -0.480 5.480 16 Si 0.768 3.232 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.188 1.188 20 C 0.295 3.705 21 O -0.426 6.426 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.113 0.887 25 H 0.142 0.858 26 H 0.139 0.861 27 H 0.145 0.855 28 H 0.216 0.784 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.610 -0.871 -2.116 8.909 hybrid contribution 0.819 0.691 0.153 1.082 sum -7.791 -0.181 -1.963 8.037 Atomic orbital electron populations 1.22995 0.79868 1.03331 1.00712 1.86209 1.19732 1.26270 1.88573 1.18463 0.89883 0.84368 1.00173 1.21010 0.99263 0.92061 1.08391 1.20585 0.94009 0.96462 1.04392 1.20775 0.93002 0.97454 0.98111 1.20477 0.93506 0.94056 1.11171 1.18137 0.90908 0.88999 0.98895 1.68731 1.03358 1.27965 1.27914 1.24962 0.87685 0.91107 0.87006 1.42695 1.08844 1.05427 1.49060 1.20039 0.78854 1.10227 1.38042 0.86505 1.25685 1.02312 0.95526 0.92757 1.69771 1.39683 1.16538 1.21998 0.85696 0.79443 0.78643 0.79424 1.18973 1.20087 1.18776 1.18413 0.86807 0.84433 0.80801 1.90679 1.70226 1.29043 1.52645 0.93186 0.93202 0.88700 0.85786 0.86136 0.85501 0.78411 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 15 2 O -0.30 -5.37 10.31 -19.34 -0.20 -5.57 15 3 C 0.12 2.32 6.72 -38.88 -0.26 2.06 15 4 C -0.19 -3.05 9.03 -39.39 -0.36 -3.40 15 5 C -0.14 -2.23 10.02 -39.53 -0.40 -2.62 15 6 C -0.07 -1.47 9.67 -39.30 -0.38 -1.85 15 7 C -0.18 -4.33 5.89 -104.78 -0.62 -4.94 15 8 C 0.15 3.42 6.64 -84.37 -0.56 2.86 15 9 N -0.55 -13.46 10.17 -11.82 -0.12 -13.58 15 10 C 0.38 9.26 10.23 -89.80 -0.92 8.35 15 11 N -0.36 -9.42 2.76 -63.83 -0.18 -9.59 15 12 C -0.34 -8.95 9.10 -14.90 -0.14 -9.08 15 13 H 0.12 3.07 7.62 -52.49 -0.40 2.67 15 14 C 0.05 1.13 4.97 -17.49 -0.09 1.04 15 15 N -0.85 -20.81 11.21 55.50 0.62 -20.19 15 16 Si 0.94 18.27 29.59 -169.99 -5.03 13.24 15 17 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 18 H -0.28 -5.18 7.11 56.52 0.40 -4.78 15 19 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 20 C 0.50 13.23 7.61 -12.47 -0.09 13.13 15 21 O -0.55 -15.39 16.51 5.16 0.09 -15.30 15 22 H 0.05 0.53 7.66 -51.93 -0.40 0.13 15 23 H 0.05 0.52 7.66 -51.93 -0.40 0.12 15 24 H 0.09 0.91 8.14 -51.93 -0.42 0.49 15 25 H 0.12 1.57 6.27 -52.48 -0.33 1.24 15 26 H 0.12 1.55 8.06 -52.49 -0.42 1.13 15 27 H 0.13 2.42 7.82 -52.48 -0.41 2.01 15 28 H 0.20 4.75 6.13 -52.49 -0.32 4.43 15 29 H 0.29 6.49 8.31 -40.82 -0.34 6.15 15 LS Contribution 259.22 15.07 3.91 3.91 Total: -1.00 -30.04 259.22 -5.96 -36.00 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -2.24 Total: 4.23 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -2.82 Total: 6.85 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.33 Total: -43.36 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.11 Total: -20.87 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.04 -5.96 -36.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260186173.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.473 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds