Wall clock time and date at job start Mon Mar 30 2020 04:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35872 * 116.99950 * 2 1 4 4 C 1.38262 * 120.20727 * 359.97353 * 3 2 1 5 5 C 1.38741 * 120.76034 * 180.02562 * 4 3 2 6 6 C 1.37859 * 120.63244 * 0.02562 * 5 4 3 7 7 C 1.39375 * 119.63581 * 0.02562 * 6 5 4 8 8 C 1.40074 * 120.20950 * 180.02562 * 3 2 1 9 9 N 1.35577 * 121.62205 * 359.97438 * 8 3 2 10 10 C 1.29818 * 121.63200 * 179.97438 * 9 8 3 11 11 N 1.36272 * 123.28462 * 0.02562 * 10 9 8 12 12 C 1.37085 * 119.72107 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99763 * 150.58386 * 12 11 10 14 14 C 1.39061 * 120.00148 * 330.58640 * 12 11 10 15 15 N 1.31260 * 119.99806 * 342.53819 * 14 12 11 16 16 Si 1.86799 * 119.99934 * 162.53464 * 14 12 11 17 17 H 1.48499 * 109.47016 * 60.00262 * 16 14 12 18 18 H 1.48501 * 109.46844 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47416 * 300.00226 * 16 14 12 20 20 C 1.35341 * 120.55607 * 0.26128 * 11 10 9 21 21 O 1.21727 * 121.28780 * 179.74252 * 20 11 10 22 22 H 1.08995 * 109.47045 * 300.00108 * 1 2 3 23 23 H 1.09002 * 109.47104 * 60.00153 * 1 2 3 24 24 H 1.09001 * 109.46639 * 179.97438 * 1 2 3 25 25 H 1.08005 * 119.62624 * 0.04682 * 4 3 2 26 26 H 1.08000 * 119.68528 * 179.97438 * 5 4 3 27 27 H 1.08007 * 120.18073 * 180.02562 * 6 5 4 28 28 H 1.08002 * 118.35723 * 179.97438 * 10 9 8 29 29 H 0.97001 * 119.99800 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2971 2.3729 -0.0006 5 6 1.9149 3.6151 -0.0011 6 6 3.2899 3.7158 -0.0016 7 6 4.0656 2.5579 -0.0022 8 6 3.4444 1.2891 -0.0005 9 7 4.2188 0.1762 -0.0006 10 6 5.5150 0.2487 -0.0016 11 7 6.1981 1.4278 -0.0021 12 6 7.5689 1.4191 -0.0027 13 1 8.1138 2.2303 -0.4625 14 6 8.2578 0.3658 0.5888 15 7 7.6421 -0.4299 1.4318 16 14 10.0593 0.0834 0.1835 17 1 10.8461 1.2845 0.5626 18 1 10.5581 -1.0933 0.9396 19 1 10.2060 -0.1650 -1.2731 20 6 5.5345 2.6074 0.0036 21 8 6.1312 3.6684 0.0079 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2187 2.3132 -0.0002 26 1 1.3131 4.5119 -0.0019 27 1 3.7632 4.6866 -0.0016 28 1 6.0802 -0.6716 -0.0011 29 1 8.1227 -1.1644 1.8447 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260186173.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:05 Heat of formation + Delta-G solvation = -39.879792 kcal Electronic energy + Delta-G solvation = -17323.928204 eV Core-core repulsion = 14404.852829 eV Total energy + Delta-G solvation = -2919.075375 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.33007 -40.50594 -38.24751 -38.06034 -35.82891 -33.72182 -31.44766 -30.78205 -28.21520 -27.66985 -25.34634 -24.55531 -22.60817 -20.81546 -19.74304 -19.24086 -18.12726 -17.32713 -16.96988 -16.74976 -16.29437 -16.04156 -15.89918 -15.56464 -14.80055 -14.51393 -13.98278 -13.87225 -13.48324 -13.29011 -13.02186 -12.93131 -12.66290 -12.15382 -12.07691 -11.93597 -11.50370 -11.00926 -10.80831 -10.57514 -9.73662 -8.88167 -8.53258 -6.54017 -0.23946 -0.02825 1.33950 1.38334 1.43722 1.54318 1.97642 2.08673 2.35745 2.51967 2.65986 3.25240 3.39240 3.62243 3.98521 4.10604 4.24192 4.45866 4.48270 4.50251 4.59692 4.77757 4.82080 5.11159 5.17486 5.30655 5.38828 5.66336 5.73183 6.02670 6.28795 6.56681 6.69183 7.28966 7.33958 8.27318 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.034614 B = 0.007161 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.733804 B = 3909.249774 C = 4623.674808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.322 6.322 3 C 0.117 3.883 4 C -0.168 4.168 5 C -0.098 4.098 6 C -0.099 4.099 7 C -0.198 4.198 8 C 0.103 3.897 9 N -0.555 5.555 10 C 0.364 3.636 11 N -0.369 5.369 12 C -0.387 4.387 13 H 0.101 0.899 14 C 0.020 3.980 15 N -0.872 5.872 16 Si 1.016 2.984 17 H -0.269 1.269 18 H -0.260 1.260 19 H -0.254 1.254 20 C 0.473 3.527 21 O -0.586 6.586 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.116 0.884 25 H 0.177 0.823 26 H 0.173 0.827 27 H 0.128 0.872 28 H 0.199 0.801 29 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.411 -0.528 -2.333 11.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.236 6.236 3 C 0.070 3.930 4 C -0.188 4.188 5 C -0.117 4.117 6 C -0.119 4.119 7 C -0.206 4.206 8 C -0.012 4.012 9 N -0.279 5.279 10 C 0.080 3.920 11 N -0.072 5.072 12 C -0.514 4.514 13 H 0.118 0.882 14 C -0.188 4.188 15 N -0.504 5.504 16 Si 0.834 3.166 17 H -0.193 1.193 18 H -0.184 1.184 19 H -0.178 1.178 20 C 0.271 3.729 21 O -0.470 6.470 22 H 0.088 0.912 23 H 0.090 0.910 24 H 0.134 0.866 25 H 0.194 0.806 26 H 0.191 0.809 27 H 0.146 0.854 28 H 0.215 0.785 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.420 -0.949 -2.184 11.665 hybrid contribution 1.302 0.705 0.190 1.493 sum -10.118 -0.244 -1.994 10.315 Atomic orbital electron populations 1.23440 0.76333 1.05631 1.02627 1.86175 1.23348 1.25814 1.88217 1.18617 0.88778 0.86288 0.99315 1.21588 1.01610 0.90444 1.05157 1.21195 0.92566 0.98634 0.99295 1.20990 0.94693 0.96310 0.99904 1.20582 0.92089 0.95858 1.12033 1.18540 0.92781 0.88363 1.01526 1.68672 1.03165 1.29171 1.26933 1.24927 0.88063 0.90736 0.88248 1.42776 1.09090 1.05733 1.49564 1.20152 0.79300 1.11428 1.40487 0.88171 1.26607 1.06516 0.94127 0.91565 1.69819 1.41561 1.16877 1.22187 0.84689 0.73502 0.78648 0.79724 1.19334 1.18366 1.17804 1.19056 0.88463 0.84226 0.81155 1.90605 1.71252 1.29968 1.55183 0.91209 0.90996 0.86603 0.80610 0.80928 0.85424 0.78490 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 9.81 113.37 1.11 1.38 15 2 O -0.32 -10.90 10.31 -92.11 -0.95 -11.85 15 3 C 0.12 4.34 6.72 22.72 0.15 4.49 15 4 C -0.17 -4.63 9.03 22.40 0.20 -4.43 15 5 C -0.10 -2.79 10.02 22.30 0.22 -2.56 15 6 C -0.10 -3.84 9.67 22.45 0.22 -3.62 15 7 C -0.20 -9.58 5.89 -19.97 -0.12 -9.70 15 8 C 0.10 4.82 6.64 39.76 0.26 5.09 15 9 N -0.56 -27.86 10.17 -191.31 -1.95 -29.80 15 10 C 0.36 18.97 10.23 180.06 1.84 20.81 15 11 N -0.37 -20.65 2.76 -473.74 -1.31 -21.95 15 12 C -0.39 -21.41 9.10 84.07 0.77 -20.64 15 13 H 0.10 5.69 7.62 -2.91 -0.02 5.66 15 14 C 0.02 0.97 4.97 84.98 0.42 1.40 15 15 N -0.87 -44.08 11.21 21.67 0.24 -43.83 15 16 Si 1.02 38.04 29.59 68.60 2.03 40.07 15 17 H -0.27 -10.16 7.11 99.48 0.71 -9.45 15 18 H -0.26 -8.97 7.11 99.48 0.71 -8.27 15 19 H -0.25 -9.09 7.11 99.48 0.71 -8.38 15 20 C 0.47 26.66 7.61 86.44 0.66 27.31 15 21 O -0.59 -35.32 16.51 -4.43 -0.07 -35.39 15 22 H 0.07 1.08 7.66 -2.39 -0.02 1.07 15 23 H 0.07 1.08 7.66 -2.39 -0.02 1.07 15 24 H 0.12 1.74 8.14 -2.39 -0.02 1.72 15 25 H 0.18 3.08 6.27 -2.91 -0.02 3.07 15 26 H 0.17 3.19 8.06 -2.91 -0.02 3.17 15 27 H 0.13 4.86 7.82 -2.91 -0.02 4.84 15 28 H 0.20 10.03 6.13 -2.91 -0.02 10.01 15 29 H 0.30 13.55 8.31 -92.71 -0.77 12.78 15 Total: -1.00 -70.89 259.22 4.93 -65.96 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 1.19 Total: 17.28 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 5.74 Total: 19.52 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -3.01 Total: -95.59 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: -1.02 Total: -47.24 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Total: -70.89 4.93 -65.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260186173.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.076 kcal (2) G-P(sol) polarization free energy of solvation -70.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds