Wall clock time and date at job start Mon Mar 30 2020 04:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86807 * 119.99739 * 2 1 4 4 H 1.48495 * 109.46820 * 275.41749 * 3 2 1 5 5 H 1.48493 * 109.47011 * 35.42027 * 3 2 1 6 6 H 1.48498 * 109.47043 * 155.41768 * 3 2 1 7 7 C 1.38814 * 120.00409 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99272 * 342.94109 * 7 2 1 9 9 N 1.36949 * 120.00284 * 162.93566 * 7 2 1 10 10 C 1.38443 * 120.00100 * 310.27227 * 9 7 2 11 11 N 1.32765 * 118.89470 * 180.02562 * 10 9 7 12 12 C 1.32142 * 121.14976 * 179.97438 * 11 10 9 13 13 C 1.39557 * 118.68271 * 0.02562 * 12 11 10 14 14 N 1.35803 * 134.89649 * 179.97438 * 13 12 11 15 15 C 1.29941 * 108.71998 * 179.97438 * 14 13 12 16 16 O 1.34403 * 110.31403 * 0.02562 * 15 14 13 17 17 C 1.34664 * 108.25963 * 359.97438 * 16 15 14 18 18 N 1.32416 * 134.88360 * 180.31248 * 17 16 15 19 19 C 1.46500 * 119.99963 * 130.26355 * 9 7 2 20 20 C 1.52999 * 117.49735 * 7.38186 * 19 9 7 21 21 C 1.53003 * 60.00255 * 252.50987 * 20 19 9 22 22 H 0.96992 * 120.00102 * 359.97438 * 1 2 3 23 23 H 1.08000 * 120.65928 * 180.02562 * 12 11 10 24 24 H 1.08004 * 124.84525 * 180.02562 * 15 14 13 25 25 H 1.08994 * 115.55177 * 153.08984 * 19 9 7 26 26 H 1.09004 * 117.50212 * 0.02562 * 20 19 9 27 27 H 1.08999 * 117.49924 * 145.01760 * 20 19 9 28 28 H 1.08996 * 117.49407 * 252.51072 * 21 20 19 29 29 H 1.08998 * 117.49801 * 107.48838 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.3825 2.1125 -1.3938 5 1 1.5089 2.6169 0.8114 6 1 3.5996 1.4100 0.5824 7 6 2.0097 -1.2021 -0.0005 8 1 1.5053 -2.1170 0.2735 9 7 3.3340 -1.2280 -0.3486 10 6 3.7561 -0.6084 -1.5124 11 7 5.0449 -0.6475 -1.8289 12 6 5.4963 -0.0716 -2.9292 13 6 4.5893 0.5854 -3.7619 14 7 4.6831 1.2672 -4.9326 15 6 3.4981 1.6784 -5.2718 16 8 2.5912 1.2936 -4.3575 17 6 3.2306 0.6052 -3.3928 18 7 2.8599 -0.0014 -2.2756 19 6 4.3040 -1.9113 0.5108 20 6 3.7573 -2.7218 1.6877 21 6 4.4703 -1.3918 1.9404 22 1 -0.4850 0.8400 0.0004 23 1 6.5464 -0.1087 -3.1792 24 1 3.2738 2.2481 -6.1615 25 1 5.1925 -2.2916 0.0070 26 1 2.6759 -2.7470 1.8224 27 1 4.2861 -3.6357 1.9582 28 1 5.4682 -1.4309 2.3771 29 1 3.8580 -0.5418 2.2414 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260218463.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:44 Heat of formation + Delta-G solvation = 133.803224 kcal Electronic energy + Delta-G solvation = -17807.376016 eV Core-core repulsion = 14928.124853 eV Total energy + Delta-G solvation = -2879.251163 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.71308 -39.59215 -37.37479 -34.55715 -33.68617 -32.54600 -31.91491 -28.78069 -25.64039 -23.91843 -23.23196 -21.84319 -21.55196 -20.39505 -18.88736 -17.94292 -17.18657 -16.49796 -15.98101 -15.50429 -14.82097 -14.49016 -14.06995 -13.72890 -13.30798 -12.92139 -12.81641 -11.95022 -11.71310 -11.42313 -11.11990 -10.87711 -10.69277 -10.41944 -10.21166 -10.06829 -9.85718 -9.57813 -9.01781 -8.68487 -8.22141 -7.05214 -6.52403 -4.23457 1.23672 1.83361 2.58566 2.94908 3.24171 3.26554 3.31968 3.81498 4.19851 4.33758 4.45355 4.62504 4.77830 4.87819 5.02265 5.31711 5.47676 5.59244 5.68302 5.87155 6.10383 6.14616 6.35615 6.46051 6.61918 6.76162 6.80601 7.45771 7.63446 7.71281 8.00643 8.34132 8.69897 9.03640 9.37732 10.50733 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.024671 B = 0.011011 C = 0.008618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.647613 B = 2542.337089 C = 3248.104549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.108 3.892 3 Si 0.891 3.109 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.328 4.328 8 H 0.110 0.890 9 N -0.373 5.373 10 C 0.533 3.467 11 N -0.563 5.563 12 C 0.264 3.736 13 C -0.201 4.201 14 N -0.444 5.444 15 C 0.174 3.826 16 O -0.218 6.218 17 C 0.320 3.680 18 N -0.533 5.533 19 C 0.083 3.917 20 C -0.173 4.173 21 C -0.192 4.192 22 H 0.278 0.722 23 H 0.169 0.831 24 H 0.251 0.749 25 H 0.126 0.874 26 H 0.111 0.889 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.867 0.612 -3.079 8.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.105 4.105 3 Si 0.719 3.281 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.456 4.456 8 H 0.127 0.873 9 N -0.067 5.067 10 C 0.183 3.817 11 N -0.285 5.285 12 C 0.084 3.916 13 C -0.323 4.323 14 N -0.172 5.172 15 C -0.061 4.061 16 O -0.104 6.104 17 C 0.127 3.873 18 N -0.271 5.271 19 C -0.022 4.022 20 C -0.211 4.211 21 C -0.231 4.231 22 H 0.088 0.912 23 H 0.186 0.814 24 H 0.266 0.734 25 H 0.143 0.857 26 H 0.129 0.871 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.719 0.174 -2.243 8.040 hybrid contribution -0.237 1.451 -0.626 1.598 sum 7.482 1.625 -2.868 8.176 Atomic orbital electron populations 1.69765 1.06507 1.28731 1.42247 1.25311 0.94864 0.98867 0.91430 0.86631 0.80080 0.82923 0.78475 1.19173 1.21868 1.19504 1.18887 0.81751 0.96222 1.48696 0.87301 1.41717 1.06993 1.45443 1.12572 1.19086 0.82937 0.93157 0.86485 1.68023 1.15683 1.25509 1.19334 1.22065 0.98525 0.85499 0.85556 1.20764 0.96605 1.15280 0.99631 1.70140 1.23891 1.11623 1.11572 1.27866 0.81411 1.01559 0.95233 1.84368 1.38377 1.58411 1.29255 1.19936 0.87641 0.90971 0.88770 1.66613 1.37584 1.18395 1.04483 1.21812 0.94386 1.00338 0.85660 1.23216 1.02240 0.94186 1.01439 1.23269 1.01265 0.98492 1.00085 0.91158 0.81383 0.73358 0.85651 0.87082 0.89033 0.89120 0.88634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.98 13.96 55.49 0.77 -23.20 15 2 C 0.11 2.99 4.81 -17.46 -0.08 2.90 15 3 Si 0.89 23.02 25.03 -169.99 -4.25 18.76 15 4 H -0.27 -7.21 5.98 56.52 0.34 -6.87 15 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 15 6 H -0.27 -6.97 7.11 56.52 0.40 -6.57 15 7 C -0.33 -8.69 8.31 -15.05 -0.13 -8.81 15 8 H 0.11 2.98 7.27 -52.49 -0.38 2.60 15 9 N -0.37 -8.98 2.43 -109.92 -0.27 -9.25 15 10 C 0.53 13.07 6.39 -322.47 -2.06 11.01 15 11 N -0.56 -12.10 9.21 -13.66 -0.13 -12.22 15 12 C 0.26 5.02 11.37 -16.93 -0.19 4.82 15 13 C -0.20 -4.16 7.30 -84.64 -0.62 -4.78 15 14 N -0.44 -8.08 11.33 -12.43 -0.14 -8.22 15 15 C 0.17 2.74 13.13 51.96 0.68 3.42 15 16 O -0.22 -4.52 10.75 4.44 0.05 -4.47 15 17 C 0.32 7.56 8.01 -16.33 -0.13 7.43 15 18 N -0.53 -13.91 6.06 -13.83 -0.08 -14.00 15 19 C 0.08 1.63 6.18 -67.93 -0.42 1.21 15 20 C -0.17 -2.92 9.83 -26.73 -0.26 -3.18 15 21 C -0.19 -3.37 10.29 -26.73 -0.28 -3.64 15 22 H 0.28 7.49 8.31 -40.82 -0.34 7.15 15 23 H 0.17 2.42 8.06 -52.49 -0.42 2.00 15 24 H 0.25 2.24 8.06 -52.48 -0.42 1.81 15 25 H 0.13 2.26 7.60 -51.93 -0.39 1.87 15 26 H 0.11 2.07 6.64 -51.93 -0.34 1.73 15 27 H 0.09 1.25 8.14 -51.93 -0.42 0.82 15 28 H 0.09 1.32 8.14 -51.93 -0.42 0.89 15 29 H 0.10 1.88 8.14 -51.93 -0.42 1.46 15 LS Contribution 254.95 15.07 3.84 3.84 Total: -1.00 -32.28 254.95 -6.13 -38.41 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -2.43 Total: -0.03 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: -3.49 Total: 10.38 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: 0.16 Total: -66.90 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: 0.05 Total: -4.47 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.25 Total: 18.76 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.28 -6.13 -38.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260218463.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.210 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds