Wall clock time and date at job start Mon Mar 30 2020 04:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86807 * 119.99739 * 2 1 4 4 H 1.48495 * 109.46820 * 275.41749 * 3 2 1 5 5 H 1.48493 * 109.47011 * 35.42027 * 3 2 1 6 6 H 1.48498 * 109.47043 * 155.41768 * 3 2 1 7 7 C 1.38814 * 120.00409 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99272 * 342.94109 * 7 2 1 9 9 N 1.36949 * 120.00284 * 162.93566 * 7 2 1 10 10 C 1.38443 * 120.00100 * 310.27227 * 9 7 2 11 11 N 1.32765 * 118.89470 * 180.02562 * 10 9 7 12 12 C 1.32142 * 121.14976 * 179.97438 * 11 10 9 13 13 C 1.39557 * 118.68271 * 0.02562 * 12 11 10 14 14 N 1.35803 * 134.89649 * 179.97438 * 13 12 11 15 15 C 1.29941 * 108.71998 * 179.97438 * 14 13 12 16 16 O 1.34403 * 110.31403 * 0.02562 * 15 14 13 17 17 C 1.34664 * 108.25963 * 359.97438 * 16 15 14 18 18 N 1.32416 * 134.88360 * 180.31248 * 17 16 15 19 19 C 1.46500 * 119.99963 * 130.26355 * 9 7 2 20 20 C 1.52999 * 117.49735 * 7.38186 * 19 9 7 21 21 C 1.53003 * 60.00255 * 252.50987 * 20 19 9 22 22 H 0.96992 * 120.00102 * 359.97438 * 1 2 3 23 23 H 1.08000 * 120.65928 * 180.02562 * 12 11 10 24 24 H 1.08004 * 124.84525 * 180.02562 * 15 14 13 25 25 H 1.08994 * 115.55177 * 153.08984 * 19 9 7 26 26 H 1.09004 * 117.50212 * 0.02562 * 20 19 9 27 27 H 1.08999 * 117.49924 * 145.01760 * 20 19 9 28 28 H 1.08996 * 117.49407 * 252.51072 * 21 20 19 29 29 H 1.08998 * 117.49801 * 107.48838 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.3825 2.1125 -1.3938 5 1 1.5089 2.6169 0.8114 6 1 3.5996 1.4100 0.5824 7 6 2.0097 -1.2021 -0.0005 8 1 1.5053 -2.1170 0.2735 9 7 3.3340 -1.2280 -0.3486 10 6 3.7561 -0.6084 -1.5124 11 7 5.0449 -0.6475 -1.8289 12 6 5.4963 -0.0716 -2.9292 13 6 4.5893 0.5854 -3.7619 14 7 4.6831 1.2672 -4.9326 15 6 3.4981 1.6784 -5.2718 16 8 2.5912 1.2936 -4.3575 17 6 3.2306 0.6052 -3.3928 18 7 2.8599 -0.0014 -2.2756 19 6 4.3040 -1.9113 0.5108 20 6 3.7573 -2.7218 1.6877 21 6 4.4703 -1.3918 1.9404 22 1 -0.4850 0.8400 0.0004 23 1 6.5464 -0.1087 -3.1792 24 1 3.2738 2.2481 -6.1615 25 1 5.1925 -2.2916 0.0070 26 1 2.6759 -2.7470 1.8224 27 1 4.2861 -3.6357 1.9582 28 1 5.4682 -1.4309 2.3771 29 1 3.8580 -0.5418 2.2414 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260218463.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:44 Heat of formation + Delta-G solvation = 109.521136 kcal Electronic energy + Delta-G solvation = -17808.428966 eV Core-core repulsion = 14928.124853 eV Total energy + Delta-G solvation = -2880.304114 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.30773 -41.28482 -38.93422 -36.14421 -35.36593 -34.26479 -33.78978 -30.42623 -27.42591 -25.61866 -24.83624 -23.20632 -23.12008 -22.01176 -20.62452 -19.58457 -18.87551 -18.16046 -17.66124 -17.18880 -16.54322 -15.87652 -15.78296 -15.37310 -14.98534 -14.75287 -14.51735 -13.64948 -13.44972 -13.18014 -12.78580 -12.59204 -12.27477 -12.20830 -11.84194 -11.76236 -11.37587 -11.22869 -10.91402 -10.39899 -9.96947 -8.82148 -8.53622 -6.27046 -0.28273 0.10225 0.96281 1.17618 1.20683 1.23537 1.52092 2.15936 2.18938 2.70911 2.87959 3.03963 3.19709 3.28097 3.39814 3.81939 4.04039 4.22021 4.28237 4.34966 4.69613 4.80060 4.85412 5.02508 5.19588 5.32914 5.42858 5.57615 5.81472 5.92785 6.37009 6.57235 6.85982 7.09056 7.57420 8.50201 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.024671 B = 0.011011 C = 0.008618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.647613 B = 2542.337089 C = 3248.104549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.936 3.064 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.322 4.322 8 H 0.085 0.915 9 N -0.398 5.398 10 C 0.531 3.469 11 N -0.561 5.561 12 C 0.269 3.731 13 C -0.189 4.189 14 N -0.460 5.460 15 C 0.212 3.788 16 O -0.234 6.234 17 C 0.278 3.722 18 N -0.579 5.579 19 C 0.059 3.941 20 C -0.157 4.157 21 C -0.184 4.184 22 H 0.277 0.723 23 H 0.222 0.778 24 H 0.317 0.683 25 H 0.143 0.857 26 H 0.085 0.915 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.690 1.063 -4.623 11.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.132 4.132 3 Si 0.765 3.235 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.197 1.197 7 C -0.450 4.450 8 H 0.103 0.897 9 N -0.096 5.096 10 C 0.180 3.820 11 N -0.284 5.284 12 C 0.091 3.909 13 C -0.309 4.309 14 N -0.187 5.187 15 C -0.021 4.021 16 O -0.121 6.121 17 C 0.087 3.913 18 N -0.318 5.318 19 C -0.044 4.044 20 C -0.195 4.195 21 C -0.223 4.223 22 H 0.087 0.913 23 H 0.238 0.762 24 H 0.331 0.669 25 H 0.161 0.839 26 H 0.103 0.897 27 H 0.150 0.850 28 H 0.146 0.854 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.584 0.644 -3.820 11.271 hybrid contribution -0.959 1.369 -0.520 1.751 sum 9.625 2.012 -4.340 10.748 Atomic orbital electron populations 1.69827 1.07380 1.28859 1.46148 1.25696 0.95083 1.00531 0.91889 0.85938 0.79297 0.81377 0.76898 1.21372 1.21484 1.19655 1.18599 0.83358 0.94946 1.48091 0.89731 1.41811 1.06752 1.47359 1.13635 1.19406 0.83873 0.91917 0.86775 1.68137 1.13860 1.26111 1.20286 1.22964 1.00501 0.83534 0.83943 1.21135 0.95434 1.14177 1.00132 1.70244 1.24811 1.12923 1.10765 1.29555 0.79862 0.98119 0.94569 1.84395 1.40123 1.58115 1.29512 1.20311 0.89400 0.92276 0.89301 1.66441 1.39514 1.19697 1.06129 1.22102 0.94540 1.01735 0.86069 1.23254 1.01179 0.95622 0.99401 1.23310 1.02691 0.97726 0.98568 0.91317 0.76180 0.66877 0.83935 0.89687 0.84975 0.85389 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.17 13.96 21.65 0.30 -52.87 15 2 C 0.08 4.37 4.81 84.87 0.41 4.78 15 3 Si 0.94 49.22 25.03 68.60 1.72 50.94 15 4 H -0.29 -15.84 5.98 99.48 0.59 -15.24 15 5 H -0.29 -14.54 7.11 99.48 0.71 -13.83 15 6 H -0.27 -14.07 7.11 99.48 0.71 -13.37 15 7 C -0.32 -17.78 8.31 84.03 0.70 -17.08 15 8 H 0.09 4.94 7.27 -2.91 -0.02 4.92 15 9 N -0.40 -19.43 2.43 -501.66 -1.22 -20.65 15 10 C 0.53 26.01 6.39 261.37 1.67 27.68 15 11 N -0.56 -23.05 9.21 -197.13 -1.82 -24.87 15 12 C 0.27 9.37 11.37 84.96 0.97 10.33 15 13 C -0.19 -7.31 7.30 39.48 0.29 -7.02 15 14 N -0.46 -14.90 11.33 -307.96 -3.49 -18.39 15 15 C 0.21 5.78 13.13 130.52 1.71 7.49 15 16 O -0.23 -9.28 10.75 -7.01 -0.08 -9.35 15 17 C 0.28 12.89 8.01 85.23 0.68 13.57 15 18 N -0.58 -30.57 6.06 -311.00 -1.89 -32.46 15 19 C 0.06 2.27 6.18 44.99 0.28 2.55 15 20 C -0.16 -5.13 9.83 30.60 0.30 -4.83 15 21 C -0.18 -6.21 10.29 30.60 0.31 -5.90 15 22 H 0.28 15.71 8.31 -92.71 -0.77 14.94 15 23 H 0.22 5.21 8.06 -2.91 -0.02 5.18 15 24 H 0.32 3.58 8.06 -2.91 -0.02 3.56 15 25 H 0.14 4.85 7.60 -2.39 -0.02 4.83 15 26 H 0.08 3.25 6.64 -2.39 -0.02 3.24 15 27 H 0.13 3.20 8.14 -2.39 -0.02 3.18 15 28 H 0.13 3.30 8.14 -2.39 -0.02 3.28 15 29 H 0.07 2.65 8.14 -2.39 -0.02 2.63 15 Total: -1.00 -74.68 254.95 1.93 -72.75 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: 1.08 Total: 3.31 kcal Atomic # 6 Polarization: 24.27 SS G_CDS: 7.32 Total: 31.59 kcal Atomic # 7 Polarization: -141.13 SS G_CDS: -8.11 Total: -149.24 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -0.08 Total: -9.35 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 1.72 Total: 50.94 kcal Total: -74.68 1.93 -72.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260218463.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.272 kcal (2) G-P(sol) polarization free energy of solvation -74.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds