Wall clock time and date at job start Mon Mar 30 2020 03:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99942 * 2 1 4 4 H 1.48493 * 109.47097 * 270.00169 * 3 2 1 5 5 H 1.48506 * 109.46887 * 29.99751 * 3 2 1 6 6 H 1.48494 * 109.47220 * 149.99983 * 3 2 1 7 7 C 1.37881 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99609 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47059 * 179.97438 * 9 7 2 11 11 N 1.32445 * 118.54306 * 89.99540 * 10 9 7 12 12 C 1.32370 * 121.51496 * 180.02562 * 11 10 9 13 13 O 1.35297 * 120.88098 * 180.02562 * 12 11 10 14 14 C 1.41441 * 118.23002 * 0.02562 * 12 11 10 15 15 C 1.40047 * 122.03786 * 180.02562 * 14 12 11 16 16 C 1.36325 * 119.74888 * 179.97438 * 15 14 12 17 17 C 1.39180 * 120.98092 * 0.02562 * 16 15 14 18 18 C 1.37722 * 120.83213 * 359.97438 * 17 16 15 19 19 O 1.35871 * 120.31622 * 179.97438 * 18 17 16 20 20 C 1.40676 * 119.37183 * 0.02707 * 18 17 16 21 21 N 1.31138 * 118.54552 * 269.97904 * 10 9 7 22 22 H 0.97000 * 120.00736 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47532 * 59.99902 * 9 7 2 24 24 H 1.08997 * 109.47304 * 299.99423 * 9 7 2 25 25 H 0.96699 * 113.99900 * 269.97823 * 13 12 11 26 26 H 1.08002 * 120.12501 * 0.25101 * 15 14 12 27 27 H 1.08004 * 119.50702 * 179.97438 * 16 15 14 28 28 H 1.07998 * 119.58258 * 180.02562 * 17 16 15 29 29 H 0.96705 * 113.99699 * 89.99983 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 7 2.6417 -4.1255 1.1640 12 6 3.5011 -5.1299 1.2326 13 8 3.9123 -5.6116 2.4282 14 6 3.9781 -5.6862 0.0228 15 6 4.8881 -6.7505 0.0024 16 6 5.3167 -7.2512 -1.1909 17 6 4.8638 -6.7200 -2.3950 18 6 3.9689 -5.6733 -2.4124 19 8 3.5340 -5.1624 -3.5939 20 6 3.5101 -5.1373 -1.1953 21 7 2.6373 -4.1211 -1.1514 22 1 -0.4851 0.8400 0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 4.7033 -5.1775 2.7762 26 1 5.2455 -7.1760 0.9285 27 1 6.0189 -8.0718 -1.2021 28 1 5.2179 -7.1343 -3.3273 29 1 2.7366 -5.5886 -3.9370 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260236087.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:10 Heat of formation + Delta-G solvation = -48.480623 kcal Electronic energy + Delta-G solvation = -16934.188376 eV Core-core repulsion = 14014.740041 eV Total energy + Delta-G solvation = -2919.448335 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.51162 -39.73081 -38.74736 -37.42409 -35.34251 -34.02983 -32.67194 -31.08720 -29.54512 -26.22498 -25.58424 -23.59028 -23.14998 -19.99302 -19.85209 -19.32658 -18.64712 -17.85682 -17.29708 -16.66542 -16.58689 -15.83202 -15.65591 -15.12302 -14.62759 -14.21906 -13.98806 -13.63790 -13.21443 -13.15830 -12.88096 -12.67761 -12.63290 -12.19668 -11.97261 -11.83204 -11.56601 -11.29246 -10.66045 -10.26968 -10.18411 -9.12913 -8.26710 -6.39366 -0.85443 -0.35294 0.68404 1.36981 1.40121 1.50562 1.89080 2.25109 2.37723 2.85946 3.01327 3.06104 3.09586 3.48107 3.71947 3.88528 4.08544 4.32188 4.40233 4.74222 4.83362 5.11364 5.13746 5.25598 5.29415 5.31273 5.61351 5.66395 5.97834 6.04657 6.44183 6.64846 6.76524 7.21053 7.26834 8.84635 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.006631 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.184478 B = 4221.477105 C = 4810.587569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.526 4.526 8 H 0.043 0.957 9 C 0.090 3.910 10 C 0.360 3.640 11 N -0.567 5.567 12 C 0.397 3.603 13 O -0.464 6.464 14 C -0.189 4.189 15 C -0.070 4.070 16 C -0.101 4.101 17 C -0.087 4.087 18 C 0.092 3.908 19 O -0.494 6.494 20 C 0.112 3.888 21 N -0.531 5.531 22 H 0.270 0.730 23 H 0.024 0.976 24 H 0.025 0.975 25 H 0.431 0.569 26 H 0.171 0.829 27 H 0.185 0.815 28 H 0.174 0.826 29 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.171 -16.943 -1.757 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.565 4.565 8 H 0.061 0.939 9 C 0.052 3.948 10 C 0.094 3.906 11 N -0.293 5.293 12 C 0.196 3.804 13 O -0.275 6.275 14 C -0.194 4.194 15 C -0.090 4.090 16 C -0.119 4.119 17 C -0.108 4.108 18 C 0.046 3.954 19 O -0.306 6.306 20 C -0.016 4.016 21 N -0.247 5.247 22 H 0.079 0.921 23 H 0.042 0.958 24 H 0.043 0.957 25 H 0.295 0.705 26 H 0.188 0.812 27 H 0.202 0.798 28 H 0.192 0.808 29 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 12.388 -16.091 -1.856 20.391 hybrid contribution 0.209 0.589 0.179 0.650 sum 12.597 -15.502 -1.676 20.045 Atomic orbital electron populations 1.70051 1.07499 1.28375 1.50307 1.25872 0.95924 1.02974 0.94052 0.85332 0.78403 0.77938 0.78641 1.19595 1.19564 1.19371 1.20960 0.92378 0.90695 1.52456 0.93863 1.17892 0.91504 0.88267 0.97164 1.23416 0.92675 0.92785 0.81772 1.67797 1.15834 1.13703 1.31948 1.19902 0.88021 0.86315 0.86181 1.84555 1.51396 1.59978 1.31607 1.19675 1.03983 1.03107 0.92676 1.21242 0.93676 0.92517 1.01537 1.21332 0.99928 1.00682 0.89939 1.21940 0.94871 0.92293 1.01726 1.18377 0.98932 0.95181 0.82950 1.84776 1.48821 1.63454 1.33548 1.20067 0.93769 0.92964 0.94830 1.68692 1.14257 1.12304 1.29406 0.92104 0.95792 0.95733 0.70525 0.81170 0.79799 0.80826 0.73634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.99 13.29 21.45 0.28 -56.70 15 2 C 0.01 0.65 5.46 84.66 0.46 1.11 15 3 Si 0.97 46.07 29.54 68.60 2.03 48.10 15 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 15 5 H -0.27 -12.14 7.11 99.48 0.71 -11.44 15 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 15 7 C -0.53 -32.32 9.09 25.60 0.23 -32.09 15 8 H 0.04 2.67 7.74 -2.91 -0.02 2.65 15 9 C 0.09 5.34 5.38 29.10 0.16 5.50 15 10 C 0.36 18.71 6.81 138.75 0.95 19.66 15 11 N -0.57 -26.58 10.30 -299.82 -3.09 -29.67 15 12 C 0.40 14.19 7.89 85.40 0.67 14.86 15 13 O -0.46 -11.88 12.92 -85.83 -1.11 -12.99 15 14 C -0.19 -6.04 5.75 -21.23 -0.12 -6.16 15 15 C -0.07 -1.38 9.60 22.26 0.21 -1.16 15 16 C -0.10 -1.49 9.95 22.05 0.22 -1.27 15 17 C -0.09 -1.64 9.94 22.37 0.22 -1.42 15 18 C 0.09 2.75 6.75 22.74 0.15 2.90 15 19 O -0.49 -14.90 13.34 -92.09 -1.23 -16.12 15 20 C 0.11 4.28 6.63 40.22 0.27 4.55 15 21 N -0.53 -25.70 10.14 -181.45 -1.84 -27.54 15 22 H 0.27 15.44 8.31 -92.71 -0.77 14.67 15 23 H 0.02 1.49 8.14 -2.39 -0.02 1.47 15 24 H 0.02 1.52 8.14 -2.39 -0.02 1.50 15 25 H 0.43 6.17 9.06 -74.06 -0.67 5.49 15 26 H 0.17 2.17 7.71 -2.91 -0.02 2.14 15 27 H 0.18 0.95 8.06 -2.91 -0.02 0.93 15 28 H 0.17 1.99 8.06 -2.91 -0.02 1.97 15 29 H 0.41 8.55 9.06 -74.05 -0.67 7.88 15 Total: -1.00 -82.93 268.38 -1.65 -84.59 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -0.12 Total: 3.87 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 3.42 Total: 6.47 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -4.64 Total: -113.91 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -2.34 Total: -29.12 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -82.93 -1.65 -84.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260236087.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.105 kcal (2) G-P(sol) polarization free energy of solvation -82.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds