Wall clock time and date at job start Mon Mar 30 2020 04:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35307 * 117.00089 * 2 1 4 4 N 1.31956 * 120.75885 * 0.02562 * 3 2 1 5 5 C 1.33996 * 121.38520 * 179.97438 * 4 3 2 6 6 C 1.41332 * 118.75477 * 180.02562 * 5 4 3 7 7 H 1.08002 * 120.00503 * 180.02562 * 6 5 4 8 8 C 1.40109 * 119.99657 * 359.72346 * 6 5 4 9 9 N 1.30664 * 120.00153 * 0.27878 * 8 6 5 10 10 Si 1.86803 * 119.99905 * 180.27311 * 8 6 5 11 11 H 1.48504 * 109.46768 * 60.00325 * 10 8 6 12 12 H 1.48490 * 109.47071 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47374 * 300.00602 * 10 8 6 14 14 N 1.33024 * 122.49531 * 0.27810 * 5 4 3 15 15 C 1.33488 * 120.34269 * 359.44846 * 14 5 4 16 16 C 1.40397 * 121.77376 * 180.24098 * 15 14 5 17 17 C 1.37835 * 119.40640 * 180.28937 * 16 15 14 18 18 O 1.35783 * 119.63250 * 180.02562 * 17 16 15 19 19 C 1.39814 * 120.73992 * 0.02562 * 17 16 15 20 20 C 1.36451 * 120.91251 * 359.97438 * 19 17 16 21 21 C 1.39728 * 119.80773 * 0.02562 * 20 19 17 22 22 H 1.09003 * 109.47126 * 299.99934 * 1 2 3 23 23 H 1.09003 * 109.47316 * 59.99299 * 1 2 3 24 24 H 1.08998 * 109.47223 * 179.97438 * 1 2 3 25 25 H 0.96996 * 120.00325 * 179.97438 * 9 8 6 26 26 H 1.08003 * 120.30358 * 0.27225 * 16 15 14 27 27 H 0.96699 * 113.99901 * 90.00031 * 18 17 16 28 28 H 1.08002 * 119.54350 * 180.02562 * 19 17 16 29 29 H 1.08002 * 120.09960 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2056 0.0000 4 7 1.3393 2.3217 0.0005 5 6 1.9346 3.5222 0.0010 6 6 1.1266 4.6817 0.0021 7 1 1.5851 5.6596 0.0021 8 6 -0.2694 4.5627 -0.0032 9 7 -0.8243 3.3797 -0.0037 10 14 -1.3375 6.0953 -0.0095 11 1 -1.0414 6.8999 -1.2220 12 1 -2.7690 5.7009 -0.0140 13 1 -1.0509 6.9033 1.2029 14 7 3.2572 3.6640 -0.0044 15 6 4.0506 2.5905 0.0005 16 6 5.4499 2.7053 0.0000 17 6 6.2226 1.5639 -0.0009 18 8 7.5763 1.6696 -0.0009 19 6 5.6281 0.2985 -0.0020 20 6 4.2705 0.1618 -0.0015 21 6 3.4579 1.2985 -0.0006 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -1.7907 3.2973 -0.0070 26 1 5.9167 3.6792 0.0001 27 1 7.9684 1.6995 0.8826 28 1 6.2521 -0.5830 -0.0023 29 1 3.8252 -0.8222 -0.0019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260250159.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:39 Heat of formation + Delta-G solvation = -18.343887 kcal Electronic energy + Delta-G solvation = -17230.323989 eV Core-core repulsion = 14312.182481 eV Total energy + Delta-G solvation = -2918.141508 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.95239 -38.24492 -37.20070 -35.33384 -33.49914 -31.87958 -29.60055 -29.10976 -26.94580 -26.14984 -22.72216 -22.36134 -21.07160 -19.05761 -17.68069 -17.27223 -16.51262 -15.67711 -15.17906 -15.16360 -14.70511 -14.36739 -13.63781 -13.22487 -13.05830 -12.95094 -12.15121 -11.82816 -11.53724 -11.43539 -11.22263 -10.91623 -10.89478 -10.68856 -10.49746 -10.19960 -9.46879 -9.17456 -8.98414 -7.98054 -7.66192 -7.24490 -6.83659 -4.92719 1.49115 1.97020 2.90057 2.92518 2.95508 3.19335 3.70578 3.84722 3.86075 4.52071 4.74632 5.54372 5.65235 5.71997 5.75916 5.81539 5.97719 6.08299 6.09259 6.27659 6.40448 6.45964 6.79237 6.86585 6.99087 7.16217 7.22164 7.42020 7.78906 8.05837 8.15837 8.28322 8.38471 8.86673 9.85727 10.04388 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.028351 B = 0.007571 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.365648 B = 3697.315722 C = 4666.988608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.318 6.318 3 C 0.379 3.621 4 N -0.532 5.532 5 C 0.416 3.584 6 C -0.374 4.374 7 H 0.100 0.900 8 C 0.064 3.936 9 N -0.704 5.704 10 Si 0.925 3.075 11 H -0.260 1.260 12 H -0.275 1.275 13 H -0.260 1.260 14 N -0.627 5.627 15 C 0.245 3.755 16 C -0.183 4.183 17 C 0.146 3.854 18 O -0.506 6.506 19 C -0.238 4.238 20 C -0.009 4.009 21 C -0.261 4.261 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.077 0.923 25 H 0.279 0.721 26 H 0.126 0.874 27 H 0.384 0.616 28 H 0.113 0.887 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.460 -4.124 1.651 4.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.222 6.222 3 C 0.174 3.826 4 N -0.264 5.264 5 C 0.183 3.817 6 C -0.407 4.407 7 H 0.118 0.882 8 C -0.164 4.164 9 N -0.325 5.325 10 Si 0.748 3.252 11 H -0.185 1.185 12 H -0.199 1.199 13 H -0.185 1.185 14 N -0.353 5.353 15 C 0.107 3.893 16 C -0.204 4.204 17 C 0.099 3.901 18 O -0.316 6.316 19 C -0.259 4.259 20 C -0.030 4.030 21 C -0.269 4.269 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.144 0.856 27 H 0.239 0.761 28 H 0.131 0.869 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.605 -3.549 1.028 3.744 hybrid contribution -0.207 -0.180 0.486 0.558 sum 0.398 -3.730 1.514 4.045 Atomic orbital electron populations 1.22692 0.77604 1.00658 1.03554 1.85999 1.22756 1.25937 1.87506 1.20419 0.87995 0.86176 0.88050 1.68945 1.37916 0.97401 1.22161 1.19580 0.85940 0.89096 0.87076 1.19544 0.89752 0.92944 1.38486 0.88157 1.26236 0.98956 0.98054 0.93158 1.70072 1.12149 1.24205 1.26025 0.86078 0.77915 0.80757 0.80438 1.18457 1.19949 1.18465 1.69184 1.04788 1.29556 1.31739 1.18473 0.93325 0.87570 0.89931 1.20811 0.91429 0.97862 1.10284 1.18336 0.81739 0.92190 0.97791 1.84730 1.17559 1.96236 1.33048 1.20595 0.94844 0.96100 1.14321 1.20495 0.92652 0.97204 0.92653 1.18432 0.91299 0.95893 1.21282 0.92082 0.92086 0.90412 0.90965 0.85575 0.76116 0.86854 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.91 10.42 101.05 1.05 1.97 15 2 O -0.32 -6.75 9.81 -17.61 -0.17 -6.93 15 3 C 0.38 9.28 7.57 -16.15 -0.12 9.16 15 4 N -0.53 -14.10 6.72 -12.38 -0.08 -14.19 15 5 C 0.42 11.53 7.35 -158.31 -1.16 10.36 15 6 C -0.37 -9.74 9.35 -37.70 -0.35 -10.09 15 7 H 0.10 2.51 7.85 -52.49 -0.41 2.10 15 8 C 0.06 1.51 5.50 -17.35 -0.10 1.41 15 9 N -0.70 -16.74 11.37 55.55 0.63 -16.11 15 10 Si 0.93 17.23 29.56 -169.99 -5.02 12.21 15 11 H -0.26 -4.84 7.11 56.52 0.40 -4.44 15 12 H -0.27 -4.92 7.11 56.52 0.40 -4.51 15 13 H -0.26 -4.82 7.11 56.52 0.40 -4.42 15 14 N -0.63 -17.07 10.34 -10.72 -0.11 -17.18 15 15 C 0.25 6.11 6.62 -84.84 -0.56 5.55 15 16 C -0.18 -3.95 9.99 -38.92 -0.39 -4.34 15 17 C 0.15 2.78 6.69 -39.14 -0.26 2.51 15 18 O -0.51 -8.03 13.47 -19.06 -0.26 -8.28 15 19 C -0.24 -4.38 9.90 -39.64 -0.39 -4.77 15 20 C -0.01 -0.19 9.58 -39.67 -0.38 -0.57 15 21 C -0.26 -6.18 5.77 -106.49 -0.61 -6.80 15 22 H 0.06 1.18 8.12 -51.93 -0.42 0.75 15 23 H 0.06 1.18 8.12 -51.93 -0.42 0.76 15 24 H 0.08 1.09 8.14 -51.93 -0.42 0.66 15 25 H 0.28 5.91 8.29 -40.82 -0.34 5.57 15 26 H 0.13 2.60 8.06 -52.48 -0.42 2.17 15 27 H 0.38 4.01 9.06 45.56 0.41 4.42 15 28 H 0.11 1.77 8.06 -52.49 -0.42 1.35 15 29 H 0.12 2.12 7.68 -52.49 -0.40 1.71 15 LS Contribution 264.70 15.07 3.99 3.99 Total: -1.00 -30.01 264.70 -5.96 -35.96 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -1.65 Total: 6.13 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -3.28 Total: 4.39 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.44 Total: -47.47 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.43 Total: -15.21 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.02 Total: 12.21 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.01 -5.96 -35.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260250159.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.621 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds