Wall clock time and date at job start Mon Mar 30 2020 04:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35307 * 117.00089 * 2 1 4 4 N 1.31956 * 120.75885 * 0.02562 * 3 2 1 5 5 C 1.33996 * 121.38520 * 179.97438 * 4 3 2 6 6 C 1.41332 * 118.75477 * 180.02562 * 5 4 3 7 7 H 1.08002 * 120.00503 * 180.02562 * 6 5 4 8 8 C 1.40109 * 119.99657 * 359.72346 * 6 5 4 9 9 N 1.30664 * 120.00153 * 0.27878 * 8 6 5 10 10 Si 1.86803 * 119.99905 * 180.27311 * 8 6 5 11 11 H 1.48504 * 109.46768 * 60.00325 * 10 8 6 12 12 H 1.48490 * 109.47071 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47374 * 300.00602 * 10 8 6 14 14 N 1.33024 * 122.49531 * 0.27810 * 5 4 3 15 15 C 1.33488 * 120.34269 * 359.44846 * 14 5 4 16 16 C 1.40397 * 121.77376 * 180.24098 * 15 14 5 17 17 C 1.37835 * 119.40640 * 180.28937 * 16 15 14 18 18 O 1.35783 * 119.63250 * 180.02562 * 17 16 15 19 19 C 1.39814 * 120.73992 * 0.02562 * 17 16 15 20 20 C 1.36451 * 120.91251 * 359.97438 * 19 17 16 21 21 C 1.39728 * 119.80773 * 0.02562 * 20 19 17 22 22 H 1.09003 * 109.47126 * 299.99934 * 1 2 3 23 23 H 1.09003 * 109.47316 * 59.99299 * 1 2 3 24 24 H 1.08998 * 109.47223 * 179.97438 * 1 2 3 25 25 H 0.96996 * 120.00325 * 179.97438 * 9 8 6 26 26 H 1.08003 * 120.30358 * 0.27225 * 16 15 14 27 27 H 0.96699 * 113.99901 * 90.00031 * 18 17 16 28 28 H 1.08002 * 119.54350 * 180.02562 * 19 17 16 29 29 H 1.08002 * 120.09960 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2056 0.0000 4 7 1.3393 2.3217 0.0005 5 6 1.9346 3.5222 0.0010 6 6 1.1266 4.6817 0.0021 7 1 1.5851 5.6596 0.0021 8 6 -0.2694 4.5627 -0.0032 9 7 -0.8243 3.3797 -0.0037 10 14 -1.3375 6.0953 -0.0095 11 1 -1.0414 6.8999 -1.2220 12 1 -2.7690 5.7009 -0.0140 13 1 -1.0509 6.9033 1.2029 14 7 3.2572 3.6640 -0.0044 15 6 4.0506 2.5905 0.0005 16 6 5.4499 2.7053 0.0000 17 6 6.2226 1.5639 -0.0009 18 8 7.5763 1.6696 -0.0009 19 6 5.6281 0.2985 -0.0020 20 6 4.2705 0.1618 -0.0015 21 6 3.4579 1.2985 -0.0006 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -1.7907 3.2973 -0.0070 26 1 5.9167 3.6792 0.0001 27 1 7.9684 1.6995 0.8826 28 1 6.2521 -0.5830 -0.0023 29 1 3.8252 -0.8222 -0.0019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260250159.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:38 Heat of formation + Delta-G solvation = -41.007593 kcal Electronic energy + Delta-G solvation = -17231.306761 eV Core-core repulsion = 14312.182481 eV Total energy + Delta-G solvation = -2919.124280 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.69828 -39.80001 -38.86725 -36.94181 -35.24117 -33.66326 -31.32766 -30.80600 -28.63674 -27.80172 -24.39421 -24.11568 -22.78623 -20.70905 -19.28824 -19.02166 -18.18695 -17.29285 -16.87657 -16.82216 -16.31992 -15.84739 -15.26659 -14.85522 -14.77633 -14.58619 -13.70516 -13.40610 -13.16762 -13.07231 -12.79463 -12.65093 -12.53744 -12.33683 -12.00929 -11.68628 -11.15974 -10.94162 -10.72370 -9.65749 -9.54567 -8.99810 -8.59006 -6.82546 -0.19380 0.26809 1.32819 1.39370 1.50567 1.52667 2.16247 2.17947 2.20613 2.82168 3.27797 3.82277 3.83601 3.97260 4.18455 4.24530 4.41156 4.55676 4.56059 4.69927 4.82411 4.93378 5.02241 5.22929 5.39148 5.53896 5.56781 5.89423 5.94244 6.23798 6.42368 6.54055 6.93341 7.02606 8.08108 8.22503 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.028351 B = 0.007571 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.365648 B = 3697.315722 C = 4666.988608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.312 6.312 3 C 0.368 3.632 4 N -0.554 5.554 5 C 0.386 3.614 6 C -0.409 4.409 7 H 0.095 0.905 8 C 0.026 3.974 9 N -0.727 5.727 10 Si 1.003 2.997 11 H -0.260 1.260 12 H -0.258 1.258 13 H -0.258 1.258 14 N -0.664 5.664 15 C 0.216 3.784 16 C -0.209 4.209 17 C 0.174 3.826 18 O -0.503 6.503 19 C -0.219 4.219 20 C -0.010 4.010 21 C -0.285 4.285 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.128 0.872 25 H 0.290 0.710 26 H 0.126 0.874 27 H 0.413 0.587 28 H 0.155 0.845 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.068 -5.644 1.782 6.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.216 6.216 3 C 0.163 3.837 4 N -0.287 5.287 5 C 0.152 3.848 6 C -0.443 4.443 7 H 0.113 0.887 8 C -0.200 4.200 9 N -0.348 5.348 10 Si 0.822 3.178 11 H -0.184 1.184 12 H -0.181 1.181 13 H -0.183 1.183 14 N -0.391 5.391 15 C 0.080 3.920 16 C -0.230 4.230 17 C 0.126 3.874 18 O -0.317 6.317 19 C -0.239 4.239 20 C -0.030 4.030 21 C -0.293 4.293 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.146 0.854 25 H 0.101 0.899 26 H 0.143 0.857 27 H 0.274 0.726 28 H 0.173 0.827 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.269 -5.127 1.181 5.412 hybrid contribution -0.166 0.109 0.456 0.498 sum 1.103 -5.018 1.638 5.392 Atomic orbital electron populations 1.22864 0.75987 1.03372 1.01942 1.86000 1.24222 1.24221 1.87166 1.20783 0.88840 0.86613 0.87451 1.68910 1.38409 0.97637 1.23719 1.20024 0.86581 0.90154 0.88013 1.19835 0.91427 0.92484 1.40552 0.88732 1.27112 0.99076 1.01551 0.92233 1.70102 1.13110 1.26106 1.25467 0.84939 0.76413 0.76251 0.80210 1.18384 1.18120 1.18263 1.69161 1.05076 1.31106 1.33793 1.18953 0.94549 0.87904 0.90558 1.20909 0.90477 0.99200 1.12384 1.18340 0.82895 0.91532 0.94635 1.84659 1.15429 1.96044 1.35519 1.21028 0.94540 0.97147 1.11188 1.20770 0.93189 0.97008 0.92065 1.18702 0.91570 0.96770 1.22228 0.93658 0.93754 0.85356 0.89856 0.85653 0.72647 0.82693 0.83781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.90 10.42 113.37 1.18 3.08 15 2 O -0.31 -13.13 9.81 -85.94 -0.84 -13.97 15 3 C 0.37 18.41 7.57 85.55 0.65 19.05 15 4 N -0.55 -30.61 6.72 -306.29 -2.06 -32.67 15 5 C 0.39 22.58 7.35 135.05 0.99 23.57 15 6 C -0.41 -22.47 9.35 23.49 0.22 -22.26 15 7 H 0.09 5.05 7.85 -2.91 -0.02 5.02 15 8 C 0.03 1.25 5.50 85.32 0.47 1.72 15 9 N -0.73 -35.47 11.37 21.85 0.25 -35.22 15 10 Si 1.00 35.72 29.56 68.60 2.03 37.75 15 11 H -0.26 -9.13 7.11 99.48 0.71 -8.42 15 12 H -0.26 -8.35 7.11 99.48 0.71 -7.64 15 13 H -0.26 -9.03 7.11 99.48 0.71 -8.33 15 14 N -0.66 -38.14 10.34 -187.83 -1.94 -40.08 15 15 C 0.22 11.08 6.62 40.39 0.27 11.35 15 16 C -0.21 -9.00 9.99 22.70 0.23 -8.77 15 17 C 0.17 6.10 6.69 22.56 0.15 6.25 15 18 O -0.50 -13.91 13.47 -91.12 -1.23 -15.14 15 19 C -0.22 -7.20 9.90 22.23 0.22 -6.98 15 20 C -0.01 -0.38 9.58 22.21 0.21 -0.17 15 21 C -0.28 -13.60 5.77 -21.08 -0.12 -13.72 15 22 H 0.04 1.76 8.12 -2.39 -0.02 1.74 15 23 H 0.04 1.73 8.12 -2.39 -0.02 1.71 15 24 H 0.13 3.25 8.14 -2.39 -0.02 3.23 15 25 H 0.29 12.40 8.29 -92.71 -0.77 11.64 15 26 H 0.13 5.26 8.06 -2.91 -0.02 5.24 15 27 H 0.41 6.75 9.06 -74.06 -0.67 6.08 15 28 H 0.16 3.88 8.06 -2.91 -0.02 3.85 15 29 H 0.14 4.65 7.68 -2.91 -0.02 4.63 15 Total: -1.00 -68.65 264.70 1.20 -67.45 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.53 Total: 18.74 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 4.47 Total: 13.14 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -3.75 Total: -107.97 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -2.07 Total: -29.11 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 2.03 Total: 37.75 kcal Total: -68.65 1.20 -67.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260250159.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.443 kcal (2) G-P(sol) polarization free energy of solvation -68.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds