Wall clock time and date at job start Mon Mar 30 2020 04:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86796 * 120.00169 * 2 1 4 4 H 1.48506 * 109.47110 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47183 * 119.99900 * 3 2 1 6 6 H 1.48507 * 109.47383 * 240.00377 * 3 2 1 7 7 C 1.40210 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99959 * 4.11868 * 7 2 1 9 9 C 1.40347 * 120.00222 * 184.12203 * 7 2 1 10 10 N 1.32089 * 125.66973 * 6.13166 * 9 7 2 11 11 N 1.40015 * 108.16607 * 180.02562 * 10 9 7 12 12 C 1.36299 * 107.69680 * 0.02562 * 11 10 9 13 13 N 1.32146 * 120.81882 * 179.97438 * 12 11 10 14 14 C 1.32900 * 121.38073 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.90014 * 180.02562 * 14 13 12 16 16 C 1.52996 * 117.50060 * 8.59914 * 15 14 13 17 17 C 1.52996 * 60.00140 * 252.51216 * 16 15 14 18 18 C 1.36710 * 120.19445 * 359.97438 * 14 13 12 19 19 C 1.34854 * 132.31966 * 179.97438 * 11 10 9 20 20 O 1.22049 * 120.62449 * 359.97438 * 19 11 10 21 21 N 1.36782 * 107.31280 * 359.73569 * 12 11 10 22 22 H 0.96996 * 125.91687 * 180.28904 * 21 12 11 23 23 H 0.97000 * 120.00048 * 174.84708 * 1 2 3 24 24 H 1.08996 * 115.54505 * 154.30877 * 15 14 13 25 25 H 1.08998 * 117.49984 * 0.02562 * 16 15 14 26 26 H 1.08997 * 117.49518 * 145.01743 * 16 15 14 27 27 H 1.09004 * 117.50029 * 252.51294 * 17 16 15 28 28 H 1.09002 * 117.51869 * 107.48236 * 17 16 15 29 29 H 1.07996 * 120.56645 * 179.97438 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2757 2.7465 -0.0006 5 1 3.0944 1.6963 1.2125 6 1 3.0944 1.6964 -1.2126 7 6 2.0077 -1.2143 -0.0005 8 1 1.4698 -2.1483 -0.0681 9 6 3.4084 -1.2159 0.0868 10 7 4.1689 -0.1548 0.2879 11 7 5.5049 -0.5731 0.3103 12 6 5.5201 -1.9219 0.1152 13 7 6.6603 -2.5894 0.0887 14 6 7.8267 -1.9734 0.2509 15 6 9.1071 -2.7674 0.2141 16 6 9.0168 -4.2342 -0.2114 17 6 9.2802 -3.8773 1.2528 18 6 7.8685 -0.6215 0.4500 19 6 6.6632 0.0966 0.4790 20 8 6.6634 1.3046 0.6531 21 7 4.2210 -2.3285 -0.0188 22 1 3.9220 -3.2397 -0.1644 23 1 -0.4850 -0.8366 -0.0754 24 1 9.9967 -2.2112 -0.0813 25 1 8.0314 -4.6249 -0.4651 26 1 9.8471 -4.6433 -0.7870 27 1 10.2839 -4.0515 1.6407 28 1 8.4682 -4.0330 1.9631 29 1 8.8129 -0.1149 0.5829 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260275793.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:45 Heat of formation + Delta-G solvation = 80.730205 kcal Electronic energy + Delta-G solvation = -17238.102570 eV Core-core repulsion = 14356.549988 eV Total energy + Delta-G solvation = -2881.552582 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.95622 -38.82606 -37.55928 -35.68608 -34.10975 -33.04682 -30.82753 -29.52383 -27.10746 -24.19868 -23.18291 -22.27029 -21.27919 -20.44025 -18.96974 -17.77750 -17.40152 -16.48862 -16.04544 -15.63884 -14.64226 -14.12948 -13.97286 -13.69217 -13.44946 -13.32163 -12.69021 -12.37184 -11.89781 -11.45781 -11.35217 -11.17826 -10.48962 -10.34178 -10.26102 -10.17616 -9.65810 -9.45668 -9.41772 -8.90156 -8.72058 -7.79672 -7.33883 -5.55135 1.37481 2.27547 2.51330 2.93263 3.20474 3.57432 3.67976 3.84452 3.88978 4.21098 4.40528 4.49609 4.68528 4.86418 4.97440 5.10028 5.17819 5.57142 5.67147 5.80479 5.84675 6.12552 6.18238 6.28324 6.30871 6.57244 6.74362 6.99947 7.29253 7.58887 7.80625 7.99049 8.30374 8.41429 8.90854 9.60347 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.038555 B = 0.007114 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.062867 B = 3934.894085 C = 4578.452192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.068 3.932 3 Si 1.091 2.909 4 H -0.297 1.297 5 H -0.251 1.251 6 H -0.273 1.273 7 C -0.475 4.475 8 H 0.100 0.900 9 C 0.395 3.605 10 N -0.425 5.425 11 N -0.353 5.353 12 C 0.546 3.454 13 N -0.582 5.582 14 C 0.249 3.751 15 C -0.111 4.111 16 C -0.158 4.158 17 C -0.160 4.160 18 C -0.349 4.349 19 C 0.546 3.454 20 O -0.548 6.548 21 N -0.624 5.624 22 H 0.434 0.566 23 H 0.290 0.710 24 H 0.124 0.876 25 H 0.108 0.892 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.592 -8.973 -0.523 13.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.159 4.159 3 Si 0.918 3.082 4 H -0.226 1.226 5 H -0.176 1.176 6 H -0.199 1.199 7 C -0.517 4.517 8 H 0.118 0.882 9 C 0.152 3.848 10 N -0.264 5.264 11 N -0.155 5.155 12 C 0.189 3.811 13 N -0.320 5.320 14 C 0.118 3.882 15 C -0.130 4.130 16 C -0.195 4.195 17 C -0.198 4.198 18 C -0.379 4.379 19 C 0.349 3.651 20 O -0.425 6.425 21 N -0.253 5.253 22 H 0.275 0.725 23 H 0.102 0.898 24 H 0.142 0.858 25 H 0.127 0.873 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.338 -6.279 -0.284 11.257 hybrid contribution -0.104 -2.356 -0.177 2.365 sum 9.234 -8.635 -0.461 12.651 Atomic orbital electron populations 1.70612 1.07535 1.33256 1.28804 1.27397 0.95233 1.04690 0.88547 0.82962 0.72560 0.70788 0.81891 1.22594 1.17626 1.19936 1.19819 0.85876 0.98170 1.47816 0.88215 1.21269 0.93336 0.79236 0.90919 1.77997 0.82750 1.17055 1.48601 1.48596 1.08399 1.06727 1.51825 1.20199 0.87796 0.82382 0.90746 1.67267 0.94099 1.35842 1.34758 1.19681 0.90243 0.90520 0.87734 1.20889 0.94575 0.90620 1.06877 1.22933 1.03814 0.95801 0.97002 1.22927 1.02777 1.01224 0.92833 1.21894 0.97447 0.94465 1.24130 1.16682 0.80543 0.88123 0.79768 1.90866 1.85300 1.13551 1.52828 1.42697 1.01476 1.12218 1.68862 0.72462 0.89766 0.85849 0.87323 0.88845 0.88471 0.88567 0.83292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.88 13.64 55.56 0.76 -18.12 15 2 C 0.07 1.66 5.52 -17.31 -0.10 1.56 15 3 Si 1.09 26.38 25.88 -169.99 -4.40 21.98 15 4 H -0.30 -6.88 7.11 56.52 0.40 -6.48 15 5 H -0.25 -6.50 6.75 56.52 0.38 -6.12 15 6 H -0.27 -6.88 7.11 56.52 0.40 -6.48 15 7 C -0.47 -11.05 9.91 -38.05 -0.38 -11.43 15 8 H 0.10 2.15 8.05 -52.49 -0.42 1.73 15 9 C 0.39 9.21 7.43 -155.63 -1.16 8.06 15 10 N -0.43 -11.14 7.80 31.17 0.24 -10.90 15 11 N -0.35 -8.72 3.81 -15.67 -0.06 -8.78 15 12 C 0.55 11.51 9.03 -320.48 -2.89 8.62 15 13 N -0.58 -10.86 9.44 -10.07 -0.10 -10.95 15 14 C 0.25 4.33 6.43 -82.68 -0.53 3.79 15 15 C -0.11 -1.41 6.03 -91.77 -0.55 -1.97 15 16 C -0.16 -1.76 10.03 -26.73 -0.27 -2.02 15 17 C -0.16 -1.75 10.23 -26.73 -0.27 -2.02 15 18 C -0.35 -6.82 9.71 -39.35 -0.38 -7.20 15 19 C 0.55 13.39 7.72 -15.44 -0.12 13.27 15 20 O -0.55 -15.20 17.96 4.87 0.09 -15.11 15 21 N -0.62 -12.21 6.21 -12.86 -0.08 -12.29 15 22 H 0.43 6.68 8.96 -40.82 -0.37 6.31 15 23 H 0.29 6.53 8.72 -40.82 -0.36 6.18 15 24 H 0.12 1.32 8.14 -51.93 -0.42 0.89 15 25 H 0.11 1.36 7.58 -51.93 -0.39 0.97 15 26 H 0.09 0.83 8.14 -51.93 -0.42 0.40 15 27 H 0.10 0.83 8.14 -51.93 -0.42 0.41 15 28 H 0.10 1.17 8.14 -51.93 -0.42 0.75 15 29 H 0.15 2.53 8.06 -52.49 -0.42 2.11 15 LS Contribution 261.68 15.07 3.94 3.94 Total: -1.00 -30.19 261.68 -8.72 -38.91 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -2.47 Total: 0.67 kcal Atomic # 6 Polarization: 17.31 SS G_CDS: -6.65 Total: 10.66 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: 0.77 Total: -61.05 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.09 Total: -15.11 kcal Atomic # 14 Polarization: 26.38 SS G_CDS: -4.40 Total: 21.98 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.19 -8.72 -38.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260275793.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.638 kcal (2) G-P(sol) polarization free energy of solvation -30.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds