Wall clock time and date at job start Mon Mar 30 2020 04:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86796 * 120.00169 * 2 1 4 4 H 1.48506 * 109.47110 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47183 * 119.99900 * 3 2 1 6 6 H 1.48507 * 109.47383 * 240.00377 * 3 2 1 7 7 C 1.40210 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99959 * 4.11868 * 7 2 1 9 9 C 1.40347 * 120.00222 * 184.12203 * 7 2 1 10 10 N 1.32089 * 125.66973 * 6.13166 * 9 7 2 11 11 N 1.40015 * 108.16607 * 180.02562 * 10 9 7 12 12 C 1.36299 * 107.69680 * 0.02562 * 11 10 9 13 13 N 1.32146 * 120.81882 * 179.97438 * 12 11 10 14 14 C 1.32900 * 121.38073 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.90014 * 180.02562 * 14 13 12 16 16 C 1.52996 * 117.50060 * 8.59914 * 15 14 13 17 17 C 1.52996 * 60.00140 * 252.51216 * 16 15 14 18 18 C 1.36710 * 120.19445 * 359.97438 * 14 13 12 19 19 C 1.34854 * 132.31966 * 179.97438 * 11 10 9 20 20 O 1.22049 * 120.62449 * 359.97438 * 19 11 10 21 21 N 1.36782 * 107.31280 * 359.73569 * 12 11 10 22 22 H 0.96996 * 125.91687 * 180.28904 * 21 12 11 23 23 H 0.97000 * 120.00048 * 174.84708 * 1 2 3 24 24 H 1.08996 * 115.54505 * 154.30877 * 15 14 13 25 25 H 1.08998 * 117.49984 * 0.02562 * 16 15 14 26 26 H 1.08997 * 117.49518 * 145.01743 * 16 15 14 27 27 H 1.09004 * 117.50029 * 252.51294 * 17 16 15 28 28 H 1.09002 * 117.51869 * 107.48236 * 17 16 15 29 29 H 1.07996 * 120.56645 * 179.97438 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2757 2.7465 -0.0006 5 1 3.0944 1.6963 1.2125 6 1 3.0944 1.6964 -1.2126 7 6 2.0077 -1.2143 -0.0005 8 1 1.4698 -2.1483 -0.0681 9 6 3.4084 -1.2159 0.0868 10 7 4.1689 -0.1548 0.2879 11 7 5.5049 -0.5731 0.3103 12 6 5.5201 -1.9219 0.1152 13 7 6.6603 -2.5894 0.0887 14 6 7.8267 -1.9734 0.2509 15 6 9.1071 -2.7674 0.2141 16 6 9.0168 -4.2342 -0.2114 17 6 9.2802 -3.8773 1.2528 18 6 7.8685 -0.6215 0.4500 19 6 6.6632 0.0966 0.4790 20 8 6.6634 1.3046 0.6531 21 7 4.2210 -2.3285 -0.0188 22 1 3.9220 -3.2397 -0.1644 23 1 -0.4850 -0.8366 -0.0754 24 1 9.9967 -2.2112 -0.0813 25 1 8.0314 -4.6249 -0.4651 26 1 9.8471 -4.6433 -0.7870 27 1 10.2839 -4.0515 1.6407 28 1 8.4682 -4.0330 1.9631 29 1 8.8129 -0.1149 0.5829 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260275793.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:44 Heat of formation + Delta-G solvation = 63.125565 kcal Electronic energy + Delta-G solvation = -17238.865965 eV Core-core repulsion = 14356.549988 eV Total energy + Delta-G solvation = -2882.315977 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.69003 -40.44603 -39.06480 -37.11853 -35.90852 -34.81849 -32.52376 -31.20983 -28.89082 -25.69422 -24.84434 -23.11530 -23.07125 -21.81122 -20.77666 -19.50476 -19.02983 -18.16973 -17.81024 -16.85598 -16.11464 -15.96140 -15.55769 -15.39485 -15.17372 -14.95798 -14.44722 -13.95153 -13.23879 -13.04343 -12.92525 -12.25957 -12.14997 -12.07821 -11.67998 -11.58204 -11.39446 -11.29755 -11.10188 -10.54162 -10.45593 -9.69052 -9.03262 -7.43247 -0.20983 0.51779 0.83941 1.08762 1.38139 1.70139 1.74389 1.93540 2.31460 2.51420 2.79037 3.11447 3.18927 3.45535 3.62510 4.00814 4.17150 4.22196 4.36560 4.62105 4.69486 4.89863 4.91773 5.03229 5.19086 5.23956 5.26885 5.43624 5.53181 5.83780 6.09623 6.19015 6.50801 6.80288 7.08995 7.74790 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.038555 B = 0.007114 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.062867 B = 3934.894085 C = 4578.452192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.057 3.943 3 Si 1.118 2.882 4 H -0.283 1.283 5 H -0.284 1.284 6 H -0.295 1.295 7 C -0.475 4.475 8 H 0.120 0.880 9 C 0.394 3.606 10 N -0.473 5.473 11 N -0.373 5.373 12 C 0.540 3.460 13 N -0.561 5.561 14 C 0.259 3.741 15 C -0.129 4.129 16 C -0.148 4.148 17 C -0.146 4.146 18 C -0.352 4.352 19 C 0.520 3.480 20 O -0.602 6.602 21 N -0.606 5.606 22 H 0.454 0.546 23 H 0.301 0.699 24 H 0.152 0.848 25 H 0.092 0.908 26 H 0.124 0.876 27 H 0.129 0.871 28 H 0.081 0.919 29 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.132 -11.554 -0.786 16.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.169 4.169 3 Si 0.948 3.052 4 H -0.211 1.211 5 H -0.211 1.211 6 H -0.223 1.223 7 C -0.517 4.517 8 H 0.138 0.862 9 C 0.151 3.849 10 N -0.313 5.313 11 N -0.176 5.176 12 C 0.183 3.817 13 N -0.298 5.298 14 C 0.128 3.872 15 C -0.148 4.148 16 C -0.185 4.185 17 C -0.184 4.184 18 C -0.381 4.381 19 C 0.327 3.673 20 O -0.485 6.485 21 N -0.237 5.237 22 H 0.299 0.701 23 H 0.114 0.886 24 H 0.170 0.830 25 H 0.111 0.889 26 H 0.142 0.858 27 H 0.148 0.852 28 H 0.099 0.901 29 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 10.858 -8.931 -0.561 14.071 hybrid contribution -0.483 -1.679 -0.090 1.749 sum 10.375 -10.610 -0.652 14.854 Atomic orbital electron populations 1.70559 1.07400 1.34170 1.28895 1.27328 0.95534 1.04998 0.89075 0.82502 0.71636 0.71781 0.79293 1.21099 1.21144 1.22286 1.19945 0.85835 0.98560 1.47372 0.86213 1.21232 0.93468 0.79870 0.90378 1.77849 0.84127 1.19270 1.50021 1.48704 1.07958 1.08205 1.52705 1.20626 0.88859 0.81362 0.90805 1.67519 0.93829 1.35029 1.33395 1.20457 0.91482 0.90387 0.84837 1.21125 0.92730 0.91424 1.09500 1.23036 1.04253 0.93687 0.97538 1.23048 1.04094 0.98778 0.92442 1.22078 0.96325 0.95286 1.24436 1.17602 0.81638 0.88136 0.79966 1.90811 1.86039 1.15646 1.56035 1.42498 1.00471 1.12449 1.68285 0.70102 0.88630 0.83039 0.88913 0.85761 0.85245 0.90056 0.80900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.19 13.64 21.87 0.30 -36.89 15 2 C 0.06 2.77 5.52 85.35 0.47 3.24 15 3 Si 1.12 55.23 25.88 68.60 1.78 57.00 15 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 15 5 H -0.28 -15.51 6.75 99.48 0.67 -14.84 15 6 H -0.30 -15.49 7.11 99.48 0.71 -14.78 15 7 C -0.48 -21.70 9.91 23.26 0.23 -21.47 15 8 H 0.12 4.92 8.05 -2.91 -0.02 4.90 15 9 C 0.39 18.34 7.43 133.74 0.99 19.34 15 10 N -0.47 -25.41 7.80 -55.31 -0.43 -25.84 15 11 N -0.37 -18.78 3.81 -321.52 -1.22 -20.01 15 12 C 0.54 22.40 9.03 260.67 2.35 24.76 15 13 N -0.56 -19.90 9.44 -185.78 -1.75 -21.65 15 14 C 0.26 8.45 6.43 42.04 0.27 8.72 15 15 C -0.13 -2.78 6.03 -11.54 -0.07 -2.85 15 16 C -0.15 -2.62 10.03 30.59 0.31 -2.32 15 17 C -0.15 -2.55 10.23 30.59 0.31 -2.24 15 18 C -0.35 -13.49 9.71 22.42 0.22 -13.27 15 19 C 0.52 26.18 7.72 84.74 0.65 26.83 15 20 O -0.60 -35.04 17.96 -5.48 -0.10 -35.14 15 21 N -0.61 -23.07 6.21 -194.60 -1.21 -24.28 15 22 H 0.45 13.05 8.96 -92.71 -0.83 12.22 15 23 H 0.30 13.04 8.72 -92.71 -0.81 12.23 15 24 H 0.15 2.48 8.14 -2.39 -0.02 2.46 15 25 H 0.09 1.99 7.58 -2.39 -0.02 1.97 15 26 H 0.12 1.50 8.14 -2.39 -0.02 1.48 15 27 H 0.13 1.50 8.14 -2.39 -0.02 1.48 15 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 15 29 H 0.17 5.62 8.06 -2.91 -0.02 5.60 15 Total: -1.00 -67.41 261.68 3.40 -64.01 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: 0.30 Total: 2.05 kcal Atomic # 6 Polarization: 35.00 SS G_CDS: 5.74 Total: 40.74 kcal Atomic # 7 Polarization: -124.35 SS G_CDS: -4.32 Total: -128.67 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -0.10 Total: -35.14 kcal Atomic # 14 Polarization: 55.23 SS G_CDS: 1.78 Total: 57.00 kcal Total: -67.41 3.40 -64.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260275793.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.139 kcal (2) G-P(sol) polarization free energy of solvation -67.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds