Wall clock time and date at job start Mon Mar 30 2020 03:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.32441 * 118.52099 * 269.72656 * 10 9 7 12 12 C 1.32368 * 121.50653 * 179.75504 * 11 10 9 13 13 O 1.35303 * 120.88899 * 180.28325 * 12 11 10 14 14 C 1.41437 * 118.22613 * 0.50312 * 12 11 10 15 15 C 1.39988 * 122.04763 * 179.71486 * 14 12 11 16 16 C 1.37770 * 119.35350 * 180.02562 * 15 14 12 17 17 O 1.35930 * 119.67366 * 180.02562 * 16 15 14 18 18 C 1.39712 * 120.64657 * 0.03767 * 16 15 14 19 19 C 1.36180 * 120.99468 * 359.97438 * 18 16 15 20 20 C 1.40192 * 119.79676 * 359.97438 * 19 18 16 21 21 N 1.31110 * 118.52643 * 90.00233 * 10 9 7 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 0.96700 * 113.99683 * 270.23055 * 13 12 11 26 26 H 1.07999 * 120.32026 * 0.04791 * 15 14 12 27 27 H 0.96698 * 113.99986 * 270.02237 * 17 16 15 28 28 H 1.08004 * 119.50452 * 179.97438 * 18 16 15 29 29 H 1.07996 * 120.10140 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.6370 -4.1237 -1.1761 12 6 3.4994 -5.1252 -1.2495 13 8 3.9110 -5.6012 -2.4473 14 6 3.9757 -5.6877 -0.0423 15 6 4.8842 -6.7525 -0.0266 16 6 5.3112 -7.2582 1.1817 17 8 6.1938 -8.2918 1.2046 18 6 4.8459 -6.7192 2.3837 19 6 3.9617 -5.6834 2.3921 20 6 3.5081 -5.1449 1.1798 21 7 2.6369 -4.1257 1.1395 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 3.3591 -6.3135 -2.7981 26 1 5.2471 -7.1733 -0.9527 27 1 5.7774 -9.1645 1.2082 28 1 5.1925 -7.1301 3.3205 29 1 3.6111 -5.2781 3.3297 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260284473.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:57 Heat of formation + Delta-G solvation = -19.104320 kcal Electronic energy + Delta-G solvation = -16743.364086 eV Core-core repulsion = 13825.189603 eV Total energy + Delta-G solvation = -2918.174483 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.16251 -38.86227 -37.62198 -36.08999 -33.18928 -32.65492 -31.29054 -30.11401 -27.60665 -24.54602 -24.07003 -22.21652 -21.89408 -19.07712 -18.54691 -18.15520 -16.65794 -16.44659 -16.04822 -15.19533 -15.03374 -14.60930 -14.15641 -13.87742 -13.27398 -12.93042 -12.45034 -12.33137 -11.94205 -11.53706 -11.38657 -10.87408 -10.84956 -10.69980 -10.45627 -10.37851 -9.72655 -9.47716 -9.03205 -8.80306 -8.46158 -7.93947 -6.08978 -4.11586 0.34320 0.87389 1.92549 2.98075 3.30653 3.37512 3.43559 3.49919 4.00016 4.25854 4.45689 4.50320 4.56240 4.75799 4.95278 5.17194 5.28377 5.44870 5.56392 5.84565 5.92747 6.08702 6.22240 6.47054 6.74958 7.33811 7.40768 7.43237 7.47281 7.53641 7.84991 8.16983 8.73918 8.88041 9.50502 11.01871 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.033562 B = 0.005625 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.086064 B = 4976.294862 C = 5311.427492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.506 4.506 8 H 0.055 0.945 9 C 0.078 3.922 10 C 0.389 3.611 11 N -0.525 5.525 12 C 0.391 3.609 13 O -0.472 6.472 14 C -0.184 4.184 15 C -0.089 4.089 16 C 0.079 3.921 17 O -0.497 6.497 18 C -0.106 4.106 19 C -0.088 4.088 20 C 0.171 3.829 21 N -0.511 5.511 22 H 0.264 0.736 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.404 0.596 26 H 0.139 0.861 27 H 0.387 0.613 28 H 0.136 0.864 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.169 -16.914 1.427 18.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.039 3.961 10 C 0.125 3.875 11 N -0.249 5.249 12 C 0.188 3.812 13 O -0.279 6.279 14 C -0.190 4.190 15 C -0.110 4.110 16 C 0.035 3.965 17 O -0.306 6.306 18 C -0.127 4.127 19 C -0.106 4.106 20 C 0.042 3.958 21 N -0.227 5.227 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.263 0.737 26 H 0.156 0.844 27 H 0.242 0.758 28 H 0.154 0.846 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.211 -15.184 1.586 16.884 hybrid contribution 0.536 -0.529 -0.264 0.798 sum 7.747 -15.713 1.322 17.569 Atomic orbital electron populations 1.69949 1.05946 1.26987 1.50094 1.24923 0.94960 0.99215 0.94891 0.86374 0.80012 0.83018 0.77681 1.19765 1.20769 1.20766 1.20813 0.92876 0.89161 1.51697 0.92681 1.18363 0.91185 0.86581 0.99970 1.24315 0.90984 0.91883 0.80361 1.68013 1.13053 1.11426 1.32362 1.19728 0.88247 0.88818 0.84378 1.84649 1.53684 1.56663 1.32912 1.19402 1.03793 1.00959 0.94884 1.21248 0.95373 0.96094 0.98319 1.18308 0.93543 0.92673 0.91984 1.84870 1.33130 1.16142 1.96476 1.21204 0.96358 0.97016 0.98157 1.20644 0.97102 0.95755 0.97129 1.19146 0.92681 0.91734 0.92270 1.68930 1.13333 1.10390 1.30026 0.92664 0.92881 0.93049 0.73652 0.84359 0.75804 0.84633 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 13.29 55.43 0.74 -25.47 15 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 15 3 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 15 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 15 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 7 C -0.51 -14.62 9.09 -34.44 -0.31 -14.94 15 8 H 0.05 1.62 7.74 -52.49 -0.41 1.22 15 9 C 0.08 2.07 5.38 -29.03 -0.16 1.91 15 10 C 0.39 9.22 6.81 -157.22 -1.07 8.15 15 11 N -0.52 -11.54 10.30 -10.40 -0.11 -11.65 15 12 C 0.39 7.00 7.89 -16.10 -0.13 6.87 15 13 O -0.47 -6.59 12.93 -17.60 -0.23 -6.82 15 14 C -0.18 -3.07 5.75 -106.72 -0.61 -3.69 15 15 C -0.09 -1.17 9.58 -39.10 -0.37 -1.55 15 16 C 0.08 0.95 6.69 -39.20 -0.26 0.68 15 17 O -0.50 -4.84 13.48 -19.52 -0.26 -5.10 15 18 C -0.11 -1.25 9.88 -39.77 -0.39 -1.64 15 19 C -0.09 -1.27 9.99 -39.59 -0.40 -1.66 15 20 C 0.17 3.13 6.61 -84.82 -0.56 2.57 15 21 N -0.51 -11.30 10.32 -8.79 -0.09 -11.39 15 22 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 23 H 0.05 1.46 8.14 -51.93 -0.42 1.03 15 24 H 0.05 1.41 8.14 -51.93 -0.42 0.99 15 25 H 0.40 3.20 9.06 45.56 0.41 3.61 15 26 H 0.14 1.52 7.72 -52.49 -0.41 1.11 15 27 H 0.39 1.74 9.06 45.56 0.41 2.15 15 28 H 0.14 1.20 8.06 -52.48 -0.42 0.78 15 29 H 0.14 1.89 8.06 -52.49 -0.42 1.47 15 LS Contribution 268.61 15.07 4.05 4.05 Total: -1.00 -34.55 268.61 -6.10 -40.65 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -0.81 Total: 0.38 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -4.36 Total: -1.61 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.54 Total: -48.51 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -0.49 Total: -11.92 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -34.55 -6.10 -40.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260284473.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.542 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds