Wall clock time and date at job start Mon Mar 30 2020 03:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31298 * 1 3 3 Si 1.86801 * 119.99605 * 2 1 4 4 H 1.48503 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47362 * 299.99803 * 3 2 1 6 6 H 1.48501 * 109.47192 * 60.00377 * 3 2 1 7 7 C 1.38983 * 120.00663 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00558 * 180.02562 * 7 2 1 9 9 N 1.37331 * 119.99497 * 0.02562 * 7 2 1 10 10 C 1.36527 * 126.08341 * 180.02562 * 9 7 2 11 11 C 1.35557 * 107.51999 * 180.02562 * 10 9 7 12 12 O 1.36140 * 126.06015 * 179.97438 * 11 10 9 13 13 C 1.35948 * 118.00241 * 185.57790 * 12 11 10 14 14 C 1.38622 * 120.07856 * 261.70114 * 13 12 11 15 15 C 1.38216 * 119.99603 * 180.02562 * 14 13 12 16 16 C 1.38269 * 120.15138 * 359.97438 * 15 14 13 17 17 C 1.38242 * 120.15510 * 0.02562 * 16 15 14 18 18 C 1.38554 * 120.00487 * 359.97438 * 17 16 15 19 19 O 1.35986 * 120.07890 * 180.02562 * 18 17 16 20 20 C 1.40541 * 107.87793 * 0.23601 * 11 10 9 21 21 N 1.30932 * 108.40078 * 359.59684 * 20 11 10 22 22 H 0.96991 * 120.00177 * 359.97438 * 1 2 3 23 23 H 1.07994 * 126.24352 * 0.02562 * 10 9 7 24 24 H 1.08000 * 119.99842 * 0.02562 * 14 13 12 25 25 H 1.07997 * 119.92675 * 180.27103 * 15 14 13 26 26 H 1.08005 * 119.91756 * 180.02562 * 16 15 14 27 27 H 1.08002 * 119.99747 * 179.97438 * 17 16 15 28 28 H 0.96709 * 113.99904 * 89.99436 * 19 18 17 29 29 H 1.07998 * 125.79324 * 179.75707 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7069 1.3465 0.0006 5 1 1.8881 2.3965 -1.2125 6 1 1.8881 2.3965 1.2125 7 6 2.0080 -1.2035 0.0005 8 1 3.0880 -1.2035 0.0010 9 7 1.3214 -2.3929 0.0005 10 6 1.8749 -3.6409 0.0015 11 6 0.8587 -4.5381 0.0006 12 8 0.9863 -5.8935 0.0006 13 6 -0.1432 -6.6409 -0.1171 14 6 -0.7414 -7.1784 1.0119 15 6 -1.8894 -7.9385 0.8902 16 6 -2.4439 -8.1642 -0.3561 17 6 -1.8525 -7.6312 -1.4862 18 6 -0.7016 -6.8683 -1.3717 19 8 -0.1189 -6.3428 -2.4823 20 6 -0.3499 -3.8209 -0.0066 21 7 -0.0714 -2.5415 -0.0010 22 1 -0.4850 0.8400 0.0004 23 1 2.9300 -3.8714 0.0028 24 1 -0.3105 -7.0032 1.9866 25 1 -2.3570 -8.3530 1.7710 26 1 -3.3413 -8.7584 -0.4468 27 1 -2.2876 -7.8095 -2.4585 28 1 -0.4422 -5.4621 -2.7168 29 1 -1.3401 -4.2519 -0.0127 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260320046.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:28 Heat of formation + Delta-G solvation = 41.387924 kcal Electronic energy + Delta-G solvation = -16991.201722 eV Core-core repulsion = 14075.650380 eV Total energy + Delta-G solvation = -2915.551343 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.29774 -39.21552 -36.98619 -36.31473 -33.46703 -30.41576 -30.29241 -29.34309 -27.62975 -24.98261 -22.61220 -22.35089 -20.67047 -19.88080 -18.43233 -17.83177 -16.27576 -15.96293 -15.69590 -15.39369 -14.62342 -14.24454 -13.92982 -13.64575 -13.54761 -13.11380 -12.43878 -12.05405 -11.93947 -11.74669 -11.44235 -11.25388 -11.02117 -10.91509 -10.53444 -10.16345 -9.36548 -8.99551 -8.68137 -8.28737 -8.21664 -6.87863 -6.61693 -4.30344 1.33566 1.40556 2.92407 3.03579 3.09422 3.50730 3.59599 3.80711 4.07312 4.24444 4.45328 4.70572 4.96173 5.03878 5.10003 5.41524 5.61884 5.78908 6.01601 6.10668 6.35766 6.49752 6.54931 6.60090 6.72354 6.83512 6.96660 7.21395 7.52070 7.85863 7.96966 8.51134 8.73086 9.28515 9.52397 10.34872 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.048261 B = 0.005291 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.043076 B = 5290.480314 C = 5310.252906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.046 3.954 3 Si 0.936 3.064 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.319 4.319 8 H 0.119 0.881 9 N -0.139 5.139 10 C -0.069 4.069 11 C -0.077 4.077 12 O -0.251 6.251 13 C 0.094 3.906 14 C -0.118 4.118 15 C -0.120 4.120 16 C -0.118 4.118 17 C -0.139 4.139 18 C 0.092 3.908 19 O -0.489 6.489 20 C -0.100 4.100 21 N -0.244 5.244 22 H 0.274 0.726 23 H 0.153 0.847 24 H 0.132 0.868 25 H 0.126 0.874 26 H 0.125 0.875 27 H 0.128 0.872 28 H 0.392 0.608 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.172 -9.117 -0.433 9.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.452 4.452 8 H 0.137 0.863 9 N 0.090 4.910 10 C -0.216 4.216 11 C -0.130 4.130 12 O -0.162 6.162 13 C 0.050 3.950 14 C -0.136 4.136 15 C -0.138 4.138 16 C -0.136 4.136 17 C -0.158 4.158 18 C 0.046 3.954 19 O -0.300 6.300 20 C -0.273 4.273 21 N -0.078 5.078 22 H 0.085 0.915 23 H 0.170 0.830 24 H 0.149 0.851 25 H 0.144 0.856 26 H 0.143 0.857 27 H 0.146 0.854 28 H 0.248 0.752 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.337 -8.422 -0.427 9.069 hybrid contribution 0.267 0.306 -0.035 0.408 sum -3.070 -8.116 -0.462 8.690 Atomic orbital electron populations 1.70207 1.06147 1.27945 1.35762 1.25640 0.95742 1.00291 0.95430 0.85735 0.79729 0.80074 0.78477 1.18583 1.19882 1.19899 1.19972 0.91813 0.80239 1.53142 0.86309 1.44515 1.03599 1.03291 1.39640 1.20934 0.97122 0.84283 1.19272 1.18311 0.93741 0.80221 1.20767 1.84095 1.26696 1.14775 1.90680 1.19097 0.88931 0.95238 0.91710 1.21348 0.95203 0.98801 0.98284 1.20999 0.95825 0.99263 0.97680 1.20984 1.00087 1.00439 0.92123 1.21323 0.94987 0.99974 0.99488 1.18943 0.92395 0.97895 0.86159 1.84797 1.65924 1.37006 1.42228 1.23569 0.96615 0.92747 1.14407 1.78158 0.90692 1.14071 1.24879 0.91505 0.82960 0.85055 0.85573 0.85704 0.85367 0.75156 0.83450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.08 11.82 55.49 0.66 -20.42 15 2 C 0.05 1.16 5.50 -17.50 -0.10 1.06 15 3 Si 0.94 18.69 29.55 -169.99 -5.02 13.66 15 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 15 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 7 C -0.32 -8.39 10.25 -14.81 -0.15 -8.55 15 8 H 0.12 2.82 7.83 -52.49 -0.41 2.41 15 9 N -0.14 -3.80 3.74 -11.43 -0.04 -3.84 15 10 C -0.07 -1.71 11.49 -16.42 -0.19 -1.90 15 11 C -0.08 -1.83 6.93 -39.67 -0.27 -2.11 15 12 O -0.25 -5.53 9.85 -19.02 -0.19 -5.71 15 13 C 0.09 1.76 4.80 -39.08 -0.19 1.58 15 14 C -0.12 -1.86 9.98 -39.45 -0.39 -2.25 15 15 C -0.12 -1.52 10.04 -39.58 -0.40 -1.92 15 16 C -0.12 -1.43 10.04 -39.57 -0.40 -1.83 15 17 C -0.14 -1.92 9.98 -39.46 -0.39 -2.32 15 18 C 0.09 1.57 6.70 -39.11 -0.26 1.31 15 19 O -0.49 -8.60 13.29 -34.19 -0.45 -9.05 15 20 C -0.10 -2.46 11.17 -17.07 -0.19 -2.65 15 21 N -0.24 -6.82 10.40 30.78 0.32 -6.50 15 22 H 0.27 6.81 8.31 -40.82 -0.34 6.47 15 23 H 0.15 3.34 8.06 -52.49 -0.42 2.92 15 24 H 0.13 1.96 8.06 -52.49 -0.42 1.53 15 25 H 0.13 1.22 8.06 -52.49 -0.42 0.80 15 26 H 0.12 1.12 8.06 -52.48 -0.42 0.70 15 27 H 0.13 1.49 8.06 -52.49 -0.42 1.06 15 28 H 0.39 5.96 9.07 45.56 0.41 6.38 15 29 H 0.15 3.29 7.77 -52.49 -0.41 2.88 15 LS Contribution 270.11 15.07 4.07 4.07 Total: -1.00 -31.59 270.11 -5.25 -36.84 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -1.65 Total: 10.53 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -2.93 Total: -19.57 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: 0.93 Total: -30.77 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.64 Total: -14.77 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.66 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.59 -5.25 -36.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260320046.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.227 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds