Wall clock time and date at job start Mon Mar 30 2020 03:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31298 * 1 3 3 Si 1.86801 * 119.99605 * 2 1 4 4 H 1.48503 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47362 * 299.99803 * 3 2 1 6 6 H 1.48501 * 109.47192 * 60.00377 * 3 2 1 7 7 C 1.38983 * 120.00663 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00558 * 180.02562 * 7 2 1 9 9 N 1.37331 * 119.99497 * 0.02562 * 7 2 1 10 10 C 1.36527 * 126.08341 * 180.02562 * 9 7 2 11 11 C 1.35557 * 107.51999 * 180.02562 * 10 9 7 12 12 O 1.36140 * 126.06015 * 179.97438 * 11 10 9 13 13 C 1.35948 * 118.00241 * 185.57790 * 12 11 10 14 14 C 1.38622 * 120.07856 * 261.70114 * 13 12 11 15 15 C 1.38216 * 119.99603 * 180.02562 * 14 13 12 16 16 C 1.38269 * 120.15138 * 359.97438 * 15 14 13 17 17 C 1.38242 * 120.15510 * 0.02562 * 16 15 14 18 18 C 1.38554 * 120.00487 * 359.97438 * 17 16 15 19 19 O 1.35986 * 120.07890 * 180.02562 * 18 17 16 20 20 C 1.40541 * 107.87793 * 0.23601 * 11 10 9 21 21 N 1.30932 * 108.40078 * 359.59684 * 20 11 10 22 22 H 0.96991 * 120.00177 * 359.97438 * 1 2 3 23 23 H 1.07994 * 126.24352 * 0.02562 * 10 9 7 24 24 H 1.08000 * 119.99842 * 0.02562 * 14 13 12 25 25 H 1.07997 * 119.92675 * 180.27103 * 15 14 13 26 26 H 1.08005 * 119.91756 * 180.02562 * 16 15 14 27 27 H 1.08002 * 119.99747 * 179.97438 * 17 16 15 28 28 H 0.96709 * 113.99904 * 89.99436 * 19 18 17 29 29 H 1.07998 * 125.79324 * 179.75707 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7069 1.3465 0.0006 5 1 1.8881 2.3965 -1.2125 6 1 1.8881 2.3965 1.2125 7 6 2.0080 -1.2035 0.0005 8 1 3.0880 -1.2035 0.0010 9 7 1.3214 -2.3929 0.0005 10 6 1.8749 -3.6409 0.0015 11 6 0.8587 -4.5381 0.0006 12 8 0.9863 -5.8935 0.0006 13 6 -0.1432 -6.6409 -0.1171 14 6 -0.7414 -7.1784 1.0119 15 6 -1.8894 -7.9385 0.8902 16 6 -2.4439 -8.1642 -0.3561 17 6 -1.8525 -7.6312 -1.4862 18 6 -0.7016 -6.8683 -1.3717 19 8 -0.1189 -6.3428 -2.4823 20 6 -0.3499 -3.8209 -0.0066 21 7 -0.0714 -2.5415 -0.0010 22 1 -0.4850 0.8400 0.0004 23 1 2.9300 -3.8714 0.0028 24 1 -0.3105 -7.0032 1.9866 25 1 -2.3570 -8.3530 1.7710 26 1 -3.3413 -8.7584 -0.4468 27 1 -2.2876 -7.8095 -2.4585 28 1 -0.4422 -5.4621 -2.7168 29 1 -1.3401 -4.2519 -0.0127 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260320046.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:28 Heat of formation + Delta-G solvation = 20.212278 kcal Electronic energy + Delta-G solvation = -16992.119967 eV Core-core repulsion = 14075.650380 eV Total energy + Delta-G solvation = -2916.469587 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.92634 -40.80396 -38.52299 -37.54232 -35.37573 -32.34292 -31.56560 -30.66941 -29.35148 -26.91403 -23.90252 -23.58946 -22.57668 -21.58792 -20.12817 -19.19219 -17.91376 -17.43428 -17.25168 -16.93852 -16.05819 -15.63927 -15.49520 -15.41595 -14.99342 -14.77020 -13.91370 -13.57305 -13.37002 -13.15612 -12.89107 -12.85312 -12.79287 -12.40589 -12.04160 -11.52170 -11.16185 -10.90078 -10.21089 -9.85065 -9.53608 -8.76769 -8.51388 -6.29407 0.12955 0.27087 1.24723 1.40294 1.59052 1.70822 2.06069 2.16754 2.39799 2.74373 2.92604 3.03785 3.26313 3.94751 4.14549 4.19012 4.43037 4.48128 4.50631 4.71513 4.83782 4.92199 5.05690 5.29339 5.33377 5.41044 5.46382 5.63546 5.84867 6.03086 6.55253 6.66954 7.04902 7.35414 7.55496 8.48415 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.048261 B = 0.005291 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.043076 B = 5290.480314 C = 5310.252906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C -0.002 4.002 3 Si 1.019 2.981 4 H -0.245 1.245 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.352 4.352 8 H 0.137 0.863 9 N -0.159 5.159 10 C -0.087 4.087 11 C -0.065 4.065 12 O -0.264 6.264 13 C 0.046 3.954 14 C -0.128 4.128 15 C -0.110 4.110 16 C -0.100 4.100 17 C -0.138 4.138 18 C 0.070 3.930 19 O -0.505 6.505 20 C -0.099 4.099 21 N -0.288 5.288 22 H 0.279 0.721 23 H 0.174 0.826 24 H 0.131 0.869 25 H 0.164 0.836 26 H 0.170 0.830 27 H 0.152 0.848 28 H 0.396 0.604 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.945 -10.109 -0.232 10.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.214 4.214 3 Si 0.838 3.162 4 H -0.168 1.168 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.483 4.483 8 H 0.154 0.846 9 N 0.069 4.931 10 C -0.233 4.233 11 C -0.118 4.118 12 O -0.176 6.176 13 C 0.002 3.998 14 C -0.147 4.147 15 C -0.128 4.128 16 C -0.118 4.118 17 C -0.156 4.156 18 C 0.024 3.976 19 O -0.316 6.316 20 C -0.272 4.272 21 N -0.123 5.123 22 H 0.089 0.911 23 H 0.191 0.809 24 H 0.149 0.851 25 H 0.182 0.818 26 H 0.187 0.813 27 H 0.170 0.830 28 H 0.253 0.747 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.108 -9.454 -0.226 10.311 hybrid contribution 0.387 0.382 -0.086 0.550 sum -3.722 -9.072 -0.312 9.810 Atomic orbital electron populations 1.70349 1.08199 1.29270 1.36985 1.26821 0.96571 1.04009 0.94025 0.84530 0.78893 0.74341 0.78429 1.16826 1.19443 1.19498 1.20655 0.92959 0.80712 1.54018 0.84594 1.44766 1.03517 1.04217 1.40602 1.21449 0.98486 0.84108 1.19280 1.18386 0.93078 0.81584 1.18802 1.84110 1.29165 1.13621 1.90708 1.19546 0.89813 0.96855 0.93546 1.21529 0.96291 0.99419 0.97440 1.21450 0.94166 0.97540 0.99597 1.21533 1.00566 0.98751 0.90954 1.21646 0.93622 0.98845 1.01517 1.19236 0.93767 0.99161 0.85388 1.84766 1.66743 1.37448 1.42647 1.23772 0.97656 0.92055 1.13691 1.78054 0.91757 1.15792 1.26649 0.91122 0.80907 0.85073 0.81805 0.81293 0.83004 0.74710 0.81873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.80 11.82 21.66 0.26 -45.55 15 2 C 0.00 -0.12 5.50 84.95 0.47 0.35 15 3 Si 1.02 38.18 29.55 68.60 2.03 40.21 15 4 H -0.25 -8.42 7.11 99.48 0.71 -7.72 15 5 H -0.27 -9.83 7.11 99.48 0.71 -9.12 15 6 H -0.27 -9.86 7.11 99.48 0.71 -9.16 15 7 C -0.35 -18.85 10.25 84.01 0.86 -17.99 15 8 H 0.14 6.48 7.83 -2.91 -0.02 6.46 15 9 N -0.16 -8.93 3.74 -190.08 -0.71 -9.64 15 10 C -0.09 -4.40 11.49 83.34 0.96 -3.45 15 11 C -0.06 -3.16 6.93 22.21 0.15 -3.01 15 12 O -0.26 -11.91 9.85 -25.27 -0.25 -12.15 15 13 C 0.05 1.70 4.80 22.59 0.11 1.81 15 14 C -0.13 -3.89 9.98 22.36 0.22 -3.67 15 15 C -0.11 -2.39 10.04 22.27 0.22 -2.17 15 16 C -0.10 -1.98 10.04 22.28 0.22 -1.76 15 17 C -0.14 -3.44 9.98 22.35 0.22 -3.22 15 18 C 0.07 2.35 6.70 22.58 0.15 2.50 15 19 O -0.50 -18.02 13.29 -79.54 -1.06 -19.07 15 20 C -0.10 -4.98 11.17 85.39 0.95 -4.03 15 21 N -0.29 -16.65 10.40 -56.53 -0.59 -17.23 15 22 H 0.28 14.18 8.31 -92.71 -0.77 13.41 15 23 H 0.17 7.73 8.06 -2.91 -0.02 7.71 15 24 H 0.13 3.85 8.06 -2.91 -0.02 3.82 15 25 H 0.16 2.34 8.06 -2.91 -0.02 2.32 15 26 H 0.17 1.93 8.06 -2.91 -0.02 1.91 15 27 H 0.15 3.02 8.06 -2.91 -0.02 2.99 15 28 H 0.40 12.54 9.07 -74.05 -0.67 11.87 15 29 H 0.16 7.43 7.77 -2.91 -0.02 7.40 15 Total: -1.00 -70.90 270.11 4.74 -66.16 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: 0.52 Total: 31.90 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 4.55 Total: -34.61 kcal Atomic # 7 Polarization: -71.38 SS G_CDS: -1.04 Total: -72.42 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -1.31 Total: -31.23 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Total: -70.90 4.74 -66.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260320046.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.374 kcal (2) G-P(sol) polarization free energy of solvation -70.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds