Wall clock time and date at job start Mon Mar 30 2020 04:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35300 * 117.00571 * 2 1 4 4 N 1.32041 * 121.09993 * 359.97438 * 3 2 1 5 5 C 1.34011 * 121.23875 * 180.02562 * 4 3 2 6 6 C 1.41158 * 118.40066 * 180.02562 * 5 4 3 7 7 H 1.08004 * 120.00058 * 180.02562 * 6 5 4 8 8 C 1.40062 * 119.99843 * 0.02562 * 6 5 4 9 9 N 1.30702 * 120.00296 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00021 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47428 * 89.99761 * 10 8 6 12 12 H 1.48505 * 109.47101 * 210.00045 * 10 8 6 13 13 H 1.48499 * 109.46953 * 329.99780 * 10 8 6 14 14 N 1.32910 * 123.20018 * 359.97438 * 5 4 3 15 15 C 1.33170 * 120.94485 * 0.02562 * 14 5 4 16 16 C 1.41205 * 121.98462 * 179.97438 * 15 14 5 17 17 O 1.35722 * 120.29535 * 0.03927 * 16 15 14 18 18 C 1.37901 * 119.40631 * 180.02562 * 16 15 14 19 19 C 1.39003 * 120.85969 * 0.02562 * 18 16 15 20 20 C 1.37835 * 120.91331 * 359.97429 * 19 18 16 21 21 C 1.39423 * 119.69497 * 0.02736 * 20 19 18 22 22 H 1.08993 * 109.47466 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47003 * 300.00208 * 1 2 3 24 24 H 1.09004 * 109.46923 * 59.99589 * 1 2 3 25 25 H 0.96995 * 120.00140 * 180.02562 * 9 8 6 26 26 H 0.96700 * 114.00177 * 269.98103 * 17 16 15 27 27 H 1.07997 * 119.57210 * 179.97438 * 18 16 15 28 28 H 1.08003 * 119.54838 * 180.02562 * 19 18 16 29 29 H 1.08004 * 120.14904 * 179.74727 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2055 0.0000 4 7 1.3457 2.3265 -0.0005 5 6 1.9513 3.5220 -0.0010 6 6 1.1471 4.6820 -0.0010 7 1 1.6081 5.6588 -0.0018 8 6 -0.2488 4.5665 0.0001 9 7 -0.8067 3.3845 0.0006 10 14 -1.3131 6.1016 0.0009 11 1 -1.5962 6.5084 -1.3990 12 1 -2.5911 5.8176 0.7020 13 1 -0.5981 7.1992 0.7003 14 7 3.2723 3.6686 -0.0006 15 6 4.0789 2.6090 -0.0001 16 6 5.4849 2.7392 -0.0001 17 8 6.0585 3.9693 0.0001 18 6 6.2700 1.6055 -0.0001 19 6 5.6948 0.3400 -0.0006 20 6 4.3253 0.1846 -0.0006 21 6 3.5025 1.3102 -0.0006 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -1.7733 3.3045 0.0010 26 1 6.2250 4.3258 -0.8832 27 1 7.3456 1.7020 -0.0005 28 1 6.3298 -0.5336 -0.0002 29 1 3.8916 -0.8045 -0.0051 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260329931.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:40 Heat of formation + Delta-G solvation = -39.686848 kcal Electronic energy + Delta-G solvation = -17368.028160 eV Core-core repulsion = 14448.961152 eV Total energy + Delta-G solvation = -2919.067008 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.52232 -39.67969 -38.51837 -37.05266 -35.41798 -33.28608 -31.74753 -30.31380 -28.46128 -27.91168 -24.48764 -24.11888 -22.63060 -20.56631 -19.36324 -18.91205 -18.13890 -17.23397 -16.86729 -16.76476 -16.32383 -15.80181 -15.42436 -14.90497 -14.74817 -14.56760 -13.55980 -13.33186 -13.12157 -12.94745 -12.70304 -12.66780 -12.50820 -12.36635 -12.01893 -11.53192 -11.18597 -10.98701 -10.63646 -9.81684 -9.50123 -8.78264 -8.59809 -6.78381 -0.18788 0.32972 1.27821 1.38109 1.46164 1.53760 2.05578 2.15333 2.26353 2.83419 3.49918 3.78322 3.86200 3.95316 4.08757 4.20902 4.48906 4.53049 4.54652 4.64800 4.89384 4.98908 5.02729 5.17227 5.47968 5.50640 5.65150 5.90555 6.05824 6.22071 6.39736 6.50476 6.93546 7.12709 8.09529 8.21783 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.024248 B = 0.008764 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.439860 B = 3193.958280 C = 4330.707344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 O -0.309 6.309 3 C 0.359 3.641 4 N -0.545 5.545 5 C 0.381 3.619 6 C -0.407 4.407 7 H 0.092 0.908 8 C 0.025 3.975 9 N -0.727 5.727 10 Si 1.004 2.996 11 H -0.258 1.258 12 H -0.258 1.258 13 H -0.260 1.260 14 N -0.657 5.657 15 C 0.175 3.825 16 C 0.032 3.968 17 O -0.493 6.493 18 C -0.080 4.080 19 C -0.183 4.183 20 C -0.041 4.041 21 C -0.262 4.262 22 H 0.130 0.870 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.290 0.710 26 H 0.389 0.611 27 H 0.157 0.843 28 H 0.162 0.838 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.138 -5.511 -1.681 6.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.212 6.212 3 C 0.152 3.848 4 N -0.277 5.277 5 C 0.147 3.853 6 C -0.440 4.440 7 H 0.111 0.889 8 C -0.200 4.200 9 N -0.348 5.348 10 Si 0.822 3.178 11 H -0.182 1.182 12 H -0.182 1.182 13 H -0.183 1.183 14 N -0.384 5.384 15 C 0.040 3.960 16 C -0.016 4.016 17 O -0.302 6.302 18 C -0.100 4.100 19 C -0.203 4.203 20 C -0.061 4.061 21 C -0.270 4.270 22 H 0.148 0.852 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.245 0.755 27 H 0.175 0.825 28 H 0.179 0.821 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.364 -5.025 -1.066 5.315 hybrid contribution -0.376 0.147 -0.487 0.632 sum 0.988 -4.878 -1.553 5.214 Atomic orbital electron populations 1.22900 0.75825 1.03526 1.01972 1.85981 1.24261 1.23992 1.87010 1.22140 0.88750 0.86512 0.87440 1.69061 1.38186 0.97563 1.22916 1.19986 0.86730 0.90148 0.88396 1.19832 0.91467 0.92519 1.40220 0.88942 1.27125 0.99056 1.01634 0.92233 1.70127 1.12967 1.26156 1.25566 0.84883 0.76789 0.76246 0.79860 1.18212 1.18152 1.18342 1.68869 1.04380 1.31618 1.33525 1.19674 0.95160 0.88292 0.92876 1.18219 0.87155 0.86035 1.10151 1.84709 1.80711 1.31013 1.33814 1.21544 1.00677 0.90957 0.96846 1.21033 0.93843 0.97400 1.07977 1.21148 0.93929 0.96726 0.94289 1.19478 0.90637 0.96251 1.20675 0.85177 0.93720 0.93609 0.89872 0.75494 0.82518 0.82096 0.84281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.88 10.43 113.37 1.18 3.06 15 2 O -0.31 -13.07 10.00 -85.86 -0.86 -13.93 15 3 C 0.36 18.10 7.74 86.76 0.67 18.77 15 4 N -0.54 -30.33 6.72 -302.44 -2.03 -32.36 15 5 C 0.38 22.53 7.34 135.04 0.99 23.52 15 6 C -0.41 -22.62 9.32 23.43 0.22 -22.40 15 7 H 0.09 5.05 7.85 -2.91 -0.02 5.02 15 8 C 0.03 1.22 5.50 85.30 0.47 1.69 15 9 N -0.73 -35.72 11.34 21.84 0.25 -35.48 15 10 Si 1.00 36.14 29.56 68.60 2.03 38.16 15 11 H -0.26 -8.90 7.11 99.48 0.71 -8.19 15 12 H -0.26 -8.53 7.11 99.48 0.71 -7.82 15 13 H -0.26 -9.37 7.11 99.48 0.71 -8.67 15 14 N -0.66 -38.15 10.10 -187.64 -1.89 -40.05 15 15 C 0.17 9.05 6.65 40.63 0.27 9.32 15 16 C 0.03 1.36 6.77 22.92 0.16 1.51 15 17 O -0.49 -19.95 13.34 -90.45 -1.21 -21.16 15 18 C -0.08 -2.66 9.94 22.37 0.22 -2.44 15 19 C -0.18 -5.72 10.01 22.36 0.22 -5.49 15 20 C -0.04 -1.53 9.69 22.46 0.22 -1.32 15 21 C -0.26 -12.60 5.90 -19.94 -0.12 -12.72 15 22 H 0.13 3.29 8.14 -2.39 -0.02 3.27 15 23 H 0.04 1.74 8.13 -2.38 -0.02 1.72 15 24 H 0.05 1.77 8.13 -2.38 -0.02 1.76 15 25 H 0.29 12.44 8.29 -92.71 -0.77 11.67 15 26 H 0.39 12.20 9.06 -74.06 -0.67 11.53 15 27 H 0.16 3.97 8.06 -2.91 -0.02 3.95 15 28 H 0.16 3.54 8.06 -2.91 -0.02 3.51 15 29 H 0.14 4.50 7.80 -2.91 -0.02 4.48 15 Total: -1.00 -70.39 265.18 1.32 -69.08 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.53 Total: 22.23 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 4.50 Total: 13.51 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -3.68 Total: -107.89 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -2.07 Total: -35.09 kcal Atomic # 14 Polarization: 36.14 SS G_CDS: 2.03 Total: 38.16 kcal Total: -70.39 1.32 -69.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260329931.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.388 kcal (2) G-P(sol) polarization free energy of solvation -70.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds