Wall clock time and date at job start Mon Mar 30 2020 04:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35168 * 117.00051 * 2 1 4 4 C 1.37483 * 119.69957 * 5.10217 * 3 2 1 5 5 C 1.39426 * 119.79157 * 179.97438 * 4 3 2 6 6 C 1.37892 * 119.56158 * 359.97438 * 5 4 3 7 7 C 1.40103 * 119.83240 * 0.02562 * 6 5 4 8 8 N 1.33668 * 118.76615 * 180.02562 * 7 6 5 9 9 C 1.31318 * 122.66792 * 179.97438 * 8 7 6 10 10 C 1.41184 * 119.66775 * 0.02562 * 9 8 7 11 11 C 1.40494 * 121.14066 * 180.02562 * 10 9 8 12 12 H 1.07992 * 120.00254 * 151.38308 * 11 10 9 13 13 C 1.39810 * 119.99753 * 331.38908 * 11 10 9 14 14 N 1.31026 * 120.00215 * 349.87506 * 13 11 10 15 15 Si 1.86803 * 120.00236 * 169.88422 * 13 11 10 16 16 H 1.48501 * 109.46703 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47547 * 119.99542 * 15 13 11 18 18 H 1.48503 * 109.47315 * 239.99880 * 15 13 11 19 19 C 1.47069 * 117.72444 * 359.97438 * 10 9 8 20 20 O 1.21780 * 120.93455 * 180.02562 * 19 10 9 21 21 N 1.35197 * 118.12650 * 359.75135 * 19 10 9 22 22 H 1.08995 * 109.47160 * 295.15797 * 1 2 3 23 23 H 1.09001 * 109.47013 * 175.16119 * 1 2 3 24 24 H 1.09003 * 109.47196 * 55.16251 * 1 2 3 25 25 H 1.08005 * 120.10541 * 359.97438 * 4 3 2 26 26 H 1.07998 * 120.21489 * 179.97438 * 5 4 3 27 27 H 1.07992 * 120.08061 * 180.02562 * 6 5 4 28 28 H 1.08003 * 120.16737 * 180.02562 * 9 8 7 29 29 H 0.96999 * 119.99897 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0427 1.2044 0.0000 4 6 1.2921 2.3513 0.1062 5 6 1.9231 3.5946 0.1069 6 6 3.2964 3.6605 0.0014 7 6 4.0446 2.4809 -0.1059 8 7 5.3746 2.5696 -0.2065 9 6 6.1495 1.5145 -0.3104 10 6 5.5761 0.2244 -0.3186 11 6 6.3759 -0.9255 -0.4277 12 1 6.0460 -1.8562 0.0094 13 6 7.5991 -0.8647 -1.1022 14 7 7.9104 0.1998 -1.7998 15 14 8.7895 -2.3013 -1.0091 16 1 8.2059 -3.3737 -0.1636 17 1 9.0381 -2.8277 -2.3752 18 1 10.0710 -1.8446 -0.4138 19 6 4.1129 0.1253 -0.2079 20 8 3.5571 -0.9583 -0.2086 21 7 3.4029 1.2707 -0.0998 22 1 -0.3633 0.4369 0.9301 23 1 -0.3633 -1.0240 -0.0867 24 1 -0.3634 0.5871 -0.8435 25 1 0.2170 2.2894 0.1888 26 1 1.3402 4.4999 0.1896 27 1 3.7939 4.6190 0.0016 28 1 7.2201 1.6331 -0.3890 29 1 8.7589 0.2417 -2.2681 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260344262.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:07 Heat of formation + Delta-G solvation = -17.504812 kcal Electronic energy + Delta-G solvation = -17537.946897 eV Core-core repulsion = 14619.841774 eV Total energy + Delta-G solvation = -2918.105123 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.91654 -40.04763 -38.74851 -37.29187 -35.62406 -34.43449 -31.84014 -30.23054 -28.57754 -27.47200 -25.01143 -24.60458 -23.28688 -20.59712 -19.34296 -18.89173 -18.59515 -17.63360 -17.47914 -16.94357 -16.12979 -16.04016 -15.92384 -15.12996 -14.88685 -14.37609 -14.05331 -13.63531 -13.33341 -13.17002 -12.97341 -12.84735 -12.81316 -12.35927 -12.07990 -11.75136 -11.30142 -11.18732 -10.84084 -10.52705 -9.74243 -8.90046 -8.46610 -6.16608 -0.26000 -0.02339 1.20440 1.33761 1.36392 1.45991 1.53173 2.01569 2.14589 2.49698 2.70288 3.40896 3.71794 3.82889 3.96852 4.12186 4.31909 4.37004 4.42815 4.66885 4.69384 4.92261 5.12346 5.23262 5.27036 5.38856 5.53466 5.62175 6.00885 6.11730 6.26889 6.47277 6.60081 7.09581 7.52224 8.11993 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.032677 B = 0.007712 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.671157 B = 3630.061155 C = 4407.666183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.322 6.322 3 C 0.276 3.724 4 C -0.253 4.253 5 C -0.060 4.060 6 C -0.142 4.142 7 C 0.222 3.778 8 N -0.498 5.498 9 C -0.002 4.002 10 C -0.079 4.079 11 C -0.412 4.412 12 H 0.074 0.926 13 C 0.022 3.978 14 N -0.806 5.806 15 Si 1.003 2.997 16 H -0.263 1.263 17 H -0.259 1.259 18 H -0.250 1.250 19 C 0.453 3.547 20 O -0.562 6.562 21 N -0.433 5.433 22 H 0.084 0.916 23 H 0.115 0.885 24 H 0.080 0.920 25 H 0.186 0.814 26 H 0.186 0.814 27 H 0.163 0.837 28 H 0.155 0.845 29 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.151 4.882 2.121 11.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.232 6.232 3 C 0.129 3.871 4 C -0.276 4.276 5 C -0.083 4.083 6 C -0.162 4.162 7 C -0.016 4.016 8 N -0.216 5.216 9 C -0.153 4.153 10 C -0.088 4.088 11 C -0.442 4.442 12 H 0.092 0.908 13 C -0.194 4.194 14 N -0.431 5.431 15 Si 0.822 3.178 16 H -0.186 1.186 17 H -0.184 1.184 18 H -0.174 1.174 19 C 0.256 3.744 20 O -0.445 6.445 21 N -0.149 5.149 22 H 0.103 0.897 23 H 0.133 0.867 24 H 0.099 0.901 25 H 0.203 0.797 26 H 0.203 0.797 27 H 0.181 0.819 28 H 0.172 0.828 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.639 4.786 1.943 10.935 hybrid contribution 0.241 -1.506 -0.254 1.546 sum -9.398 3.280 1.689 10.096 Atomic orbital electron populations 1.23589 0.74174 1.05912 1.03705 1.86144 1.24746 1.25375 1.86975 1.19852 0.82724 0.87867 0.96679 1.21219 1.01406 0.89299 1.15649 1.21444 0.92784 0.98263 0.95788 1.21050 0.94124 0.94848 1.06164 1.20269 0.89170 0.83734 1.08427 1.67781 1.00989 1.33201 1.19654 1.22479 0.98906 0.86115 1.07760 1.20762 0.88212 0.97300 1.02481 1.19470 1.01521 0.96054 1.27159 0.90776 1.26977 0.99360 1.01154 0.91907 1.69833 1.23148 1.29642 1.20459 0.84837 0.76931 0.76430 0.79607 1.18636 1.18373 1.17371 1.19913 0.89763 0.82999 0.81756 1.90682 1.72427 1.26851 1.54527 1.43975 1.05546 1.09797 1.55554 0.89727 0.86713 0.90136 0.79700 0.79681 0.81915 0.82837 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.80 113.37 1.11 1.57 15 2 O -0.32 -12.86 8.06 -61.78 -0.50 -13.36 15 3 C 0.28 11.19 7.39 83.78 0.62 11.81 15 4 C -0.25 -7.10 9.02 22.38 0.20 -6.90 15 5 C -0.06 -1.53 10.11 22.47 0.23 -1.30 15 6 C -0.14 -4.85 9.96 22.64 0.23 -4.62 15 7 C 0.22 10.40 7.33 133.59 0.98 11.38 15 8 N -0.50 -25.80 10.19 -191.07 -1.95 -27.74 15 9 C 0.00 -0.13 9.92 85.49 0.85 0.72 15 10 C -0.08 -4.70 5.73 -19.69 -0.11 -4.81 15 11 C -0.41 -23.83 8.80 23.20 0.20 -23.63 15 12 H 0.07 4.35 7.82 -2.91 -0.02 4.32 15 13 C 0.02 1.11 5.29 85.19 0.45 1.56 15 14 N -0.81 -41.72 10.85 21.81 0.24 -41.48 15 15 Si 1.00 38.40 29.57 68.60 2.03 40.43 15 16 H -0.26 -10.17 7.11 99.48 0.71 -9.46 15 17 H -0.26 -9.39 7.11 99.48 0.71 -8.68 15 18 H -0.25 -8.77 7.11 99.48 0.71 -8.06 15 19 C 0.45 26.48 7.58 86.49 0.66 27.14 15 20 O -0.56 -34.64 14.99 18.08 0.27 -34.36 15 21 N -0.43 -21.56 2.78 -581.68 -1.62 -23.18 15 22 H 0.08 1.42 7.69 -2.39 -0.02 1.40 15 23 H 0.11 2.24 8.14 -2.39 -0.02 2.22 15 24 H 0.08 1.43 7.58 -2.39 -0.02 1.41 15 25 H 0.19 3.32 6.23 -2.91 -0.02 3.30 15 26 H 0.19 2.72 8.06 -2.91 -0.02 2.70 15 27 H 0.16 4.75 8.06 -2.91 -0.02 4.73 15 28 H 0.15 8.73 6.27 -2.91 -0.02 8.72 15 29 H 0.30 13.64 8.30 -92.71 -0.77 12.87 15 Total: -1.00 -76.39 256.83 5.07 -71.32 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 1.19 Total: 15.46 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 5.41 Total: 12.92 kcal Atomic # 7 Polarization: -89.08 SS G_CDS: -3.33 Total: -92.41 kcal Atomic # 8 Polarization: -47.50 SS G_CDS: -0.23 Total: -47.73 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -76.39 5.07 -71.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260344262.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.817 kcal (2) G-P(sol) polarization free energy of solvation -76.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds