Wall clock time and date at job start Mon Mar 30 2020 03:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86797 * 120.00243 * 2 1 4 4 H 1.48498 * 109.47152 * 239.99765 * 3 2 1 5 5 H 1.48501 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47164 * 120.00033 * 3 2 1 7 7 C 1.38988 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99828 * 179.97438 * 7 2 1 9 9 N 1.37332 * 120.00073 * 359.97438 * 7 2 1 10 10 C 1.36530 * 126.08929 * 180.25941 * 9 7 2 11 11 C 1.35535 * 107.52394 * 180.12283 * 10 9 7 12 12 O 1.36148 * 126.05846 * 179.90002 * 11 10 9 13 13 C 1.35869 * 117.99825 * 185.65669 * 12 11 10 14 14 C 1.38831 * 120.03493 * 249.42343 * 13 12 11 15 15 C 1.38139 * 120.05247 * 179.97438 * 14 13 12 16 16 C 1.38203 * 120.11101 * 359.97438 * 15 14 13 17 17 C 1.38755 * 120.06665 * 0.02562 * 16 15 14 18 18 O 1.35903 * 120.03270 * 179.97438 * 17 16 15 19 19 C 1.38644 * 119.94712 * 0.02562 * 17 16 15 20 20 C 1.40536 * 107.88245 * 359.63987 * 11 10 9 21 21 N 1.30932 * 108.40129 * 0.22765 * 20 11 10 22 22 H 0.97001 * 119.99723 * 359.97438 * 1 2 3 23 23 H 1.07999 * 126.23433 * 359.97438 * 10 9 7 24 24 H 1.07998 * 119.97412 * 359.70797 * 14 13 12 25 25 H 1.07997 * 119.94635 * 180.02562 * 15 14 13 26 26 H 1.08004 * 119.97028 * 180.02562 * 16 15 14 27 27 H 0.96697 * 114.00089 * 270.03337 * 18 17 16 28 28 H 1.08008 * 120.06046 * 180.02562 * 19 17 16 29 29 H 1.07994 * 125.79984 * 180.20804 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.1008 1.6963 -1.2124 5 1 1.2821 2.7464 -0.0006 6 1 3.1008 1.6963 1.2125 7 6 2.0078 -1.2037 0.0005 8 1 3.0878 -1.2037 0.0001 9 7 1.3211 -2.3930 0.0016 10 6 1.8744 -3.6411 0.0072 11 6 0.8583 -4.5380 0.0035 12 8 0.9858 -5.8935 0.0051 13 6 -0.1425 -6.6405 -0.1175 14 6 -0.6035 -7.3849 0.9599 15 6 -1.7510 -8.1440 0.8358 16 6 -2.4430 -8.1641 -0.3603 17 6 -1.9865 -7.4219 -1.4401 18 8 -2.6673 -7.4426 -2.6162 19 6 -0.8346 -6.6600 -1.3188 20 6 -0.3503 -3.8209 0.0038 21 7 -0.0717 -2.5415 0.0026 22 1 -0.4850 0.8401 0.0004 23 1 2.9295 -3.8717 0.0112 24 1 -0.0623 -7.3738 1.8944 25 1 -2.1083 -8.7221 1.6751 26 1 -3.3401 -8.7581 -0.4546 27 1 -2.3803 -8.1372 -3.2246 28 1 -0.4779 -6.0812 -2.1581 29 1 -1.3405 -4.2518 0.0045 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260351373.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:03 Heat of formation + Delta-G solvation = 40.726914 kcal Electronic energy + Delta-G solvation = -16718.384056 eV Core-core repulsion = 13802.804050 eV Total energy + Delta-G solvation = -2915.580006 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.22583 -39.28612 -37.76786 -35.85519 -33.44279 -30.35492 -30.27244 -29.47837 -27.69881 -24.98510 -22.63064 -22.40452 -20.65139 -19.91022 -18.62208 -17.46362 -16.32382 -15.99875 -15.83624 -15.40252 -14.81241 -14.41740 -13.96710 -13.70334 -13.50291 -13.07117 -12.61065 -12.13008 -11.83587 -11.70594 -11.29987 -11.14178 -10.95545 -10.89695 -10.58186 -10.51893 -9.36881 -8.95032 -8.67361 -8.35995 -8.17929 -6.87736 -6.59068 -4.28332 1.31061 1.40865 2.96093 3.04122 3.08165 3.50909 3.55871 3.81794 4.05083 4.13463 4.45883 4.74029 4.98153 5.04625 5.20896 5.36706 5.59356 5.79867 5.95967 6.13993 6.42523 6.50622 6.54230 6.59871 6.74300 6.80682 6.96971 7.22660 7.55938 7.70202 7.94755 8.50105 8.71120 9.30464 9.54609 10.37292 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.045133 B = 0.005018 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.246464 B = 5578.678956 C = 5831.896531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.046 3.954 3 Si 0.937 3.063 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.321 4.321 8 H 0.119 0.881 9 N -0.139 5.139 10 C -0.068 4.068 11 C -0.085 4.085 12 O -0.256 6.256 13 C 0.140 3.860 14 C -0.142 4.142 15 C -0.091 4.091 16 C -0.164 4.164 17 C 0.116 3.884 18 O -0.498 6.498 19 C -0.168 4.168 20 C -0.088 4.088 21 N -0.245 5.245 22 H 0.276 0.724 23 H 0.154 0.846 24 H 0.131 0.869 25 H 0.129 0.871 26 H 0.126 0.874 27 H 0.387 0.613 28 H 0.134 0.866 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.392 -11.668 -0.922 11.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.453 4.453 8 H 0.136 0.864 9 N 0.090 4.910 10 C -0.216 4.216 11 C -0.139 4.139 12 O -0.167 6.167 13 C 0.096 3.904 14 C -0.160 4.160 15 C -0.109 4.109 16 C -0.182 4.182 17 C 0.072 3.928 18 O -0.308 6.308 19 C -0.187 4.187 20 C -0.262 4.262 21 N -0.078 5.078 22 H 0.086 0.914 23 H 0.171 0.829 24 H 0.149 0.851 25 H 0.147 0.853 26 H 0.144 0.856 27 H 0.243 0.757 28 H 0.152 0.848 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.186 -9.955 -0.667 10.214 hybrid contribution 0.751 -0.522 -0.318 0.968 sum -1.434 -10.477 -0.985 10.621 Atomic orbital electron populations 1.70199 1.06160 1.28191 1.35377 1.25650 0.95740 1.00300 0.95432 0.85860 0.79122 0.79425 0.79559 1.19092 1.20125 1.19081 1.19874 0.91756 0.80276 1.53428 0.86385 1.44522 1.03668 1.03276 1.39555 1.20913 0.97035 0.84322 1.19314 1.18247 0.93885 0.79865 1.21888 1.84018 1.27376 1.15180 1.90142 1.18559 0.87029 0.92950 0.91833 1.21274 0.96691 1.00050 0.98018 1.20815 0.94453 0.98490 0.97146 1.21338 1.01531 1.01479 0.93892 1.18244 0.91055 0.96797 0.86699 1.84847 1.61067 1.58059 1.26799 1.21848 0.95401 1.02118 0.99322 1.23625 0.96820 0.92611 1.13104 1.78182 0.90579 1.14138 1.24940 0.91359 0.82899 0.85108 0.85271 0.85574 0.75735 0.84834 0.83178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.47 11.82 55.50 0.66 -20.82 15 2 C 0.05 1.18 5.50 -17.50 -0.10 1.08 15 3 Si 0.94 18.88 29.55 -169.99 -5.02 13.86 15 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 15 6 H -0.27 -5.21 7.11 56.52 0.40 -4.80 15 7 C -0.32 -8.54 10.25 -14.81 -0.15 -8.69 15 8 H 0.12 2.80 7.83 -52.49 -0.41 2.39 15 9 N -0.14 -3.88 3.74 -11.43 -0.04 -3.92 15 10 C -0.07 -1.70 11.49 -16.43 -0.19 -1.89 15 11 C -0.09 -2.06 6.80 -39.68 -0.27 -2.33 15 12 O -0.26 -5.50 10.08 -4.31 -0.04 -5.54 15 13 C 0.14 2.57 5.12 -39.21 -0.20 2.37 15 14 C -0.14 -2.17 9.99 -39.40 -0.39 -2.57 15 15 C -0.09 -1.15 10.03 -39.63 -0.40 -1.55 15 16 C -0.16 -2.10 9.98 -39.40 -0.39 -2.50 15 17 C 0.12 1.71 6.70 -39.24 -0.26 1.45 15 18 O -0.50 -6.51 13.50 -19.43 -0.26 -6.77 15 19 C -0.17 -2.88 9.06 -39.28 -0.36 -3.24 15 20 C -0.09 -2.26 10.85 -17.07 -0.19 -2.45 15 21 N -0.24 -7.08 10.40 30.78 0.32 -6.76 15 22 H 0.28 7.02 8.31 -40.82 -0.34 6.68 15 23 H 0.15 3.30 8.06 -52.49 -0.42 2.88 15 24 H 0.13 1.85 8.06 -52.49 -0.42 1.43 15 25 H 0.13 1.22 8.06 -52.49 -0.42 0.80 15 26 H 0.13 1.31 8.06 -52.48 -0.42 0.89 15 27 H 0.39 2.93 9.06 45.56 0.41 3.35 15 28 H 0.13 2.41 8.06 -52.48 -0.42 1.98 15 29 H 0.15 3.59 7.56 -52.49 -0.40 3.19 15 LS Contribution 269.23 15.07 4.06 4.06 Total: -1.00 -32.49 269.23 -4.88 -37.36 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -1.64 Total: 8.86 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -2.90 Total: -20.32 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.93 Total: -31.50 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.31 Total: -12.32 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.49 -4.88 -37.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260351373.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.091 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds