Wall clock time and date at job start Mon Mar 30 2020 03:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86797 * 120.00243 * 2 1 4 4 H 1.48498 * 109.47152 * 239.99765 * 3 2 1 5 5 H 1.48501 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47164 * 120.00033 * 3 2 1 7 7 C 1.38988 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99828 * 179.97438 * 7 2 1 9 9 N 1.37332 * 120.00073 * 359.97438 * 7 2 1 10 10 C 1.36530 * 126.08929 * 180.25941 * 9 7 2 11 11 C 1.35535 * 107.52394 * 180.12283 * 10 9 7 12 12 O 1.36148 * 126.05846 * 179.90002 * 11 10 9 13 13 C 1.35869 * 117.99825 * 185.65669 * 12 11 10 14 14 C 1.38831 * 120.03493 * 249.42343 * 13 12 11 15 15 C 1.38139 * 120.05247 * 179.97438 * 14 13 12 16 16 C 1.38203 * 120.11101 * 359.97438 * 15 14 13 17 17 C 1.38755 * 120.06665 * 0.02562 * 16 15 14 18 18 O 1.35903 * 120.03270 * 179.97438 * 17 16 15 19 19 C 1.38644 * 119.94712 * 0.02562 * 17 16 15 20 20 C 1.40536 * 107.88245 * 359.63987 * 11 10 9 21 21 N 1.30932 * 108.40129 * 0.22765 * 20 11 10 22 22 H 0.97001 * 119.99723 * 359.97438 * 1 2 3 23 23 H 1.07999 * 126.23433 * 359.97438 * 10 9 7 24 24 H 1.07998 * 119.97412 * 359.70797 * 14 13 12 25 25 H 1.07997 * 119.94635 * 180.02562 * 15 14 13 26 26 H 1.08004 * 119.97028 * 180.02562 * 16 15 14 27 27 H 0.96697 * 114.00089 * 270.03337 * 18 17 16 28 28 H 1.08008 * 120.06046 * 180.02562 * 19 17 16 29 29 H 1.07994 * 125.79984 * 180.20804 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.1008 1.6963 -1.2124 5 1 1.2821 2.7464 -0.0006 6 1 3.1008 1.6963 1.2125 7 6 2.0078 -1.2037 0.0005 8 1 3.0878 -1.2037 0.0001 9 7 1.3211 -2.3930 0.0016 10 6 1.8744 -3.6411 0.0072 11 6 0.8583 -4.5380 0.0035 12 8 0.9858 -5.8935 0.0051 13 6 -0.1425 -6.6405 -0.1175 14 6 -0.6035 -7.3849 0.9599 15 6 -1.7510 -8.1440 0.8358 16 6 -2.4430 -8.1641 -0.3603 17 6 -1.9865 -7.4219 -1.4401 18 8 -2.6673 -7.4426 -2.6162 19 6 -0.8346 -6.6600 -1.3188 20 6 -0.3503 -3.8209 0.0038 21 7 -0.0717 -2.5415 0.0026 22 1 -0.4850 0.8401 0.0004 23 1 2.9295 -3.8717 0.0112 24 1 -0.0623 -7.3738 1.8944 25 1 -2.1083 -8.7221 1.6751 26 1 -3.3401 -8.7581 -0.4546 27 1 -2.3803 -8.1372 -3.2246 28 1 -0.4779 -6.0812 -2.1581 29 1 -1.3405 -4.2518 0.0045 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260351373.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:03 Heat of formation + Delta-G solvation = 17.864470 kcal Electronic energy + Delta-G solvation = -16719.375446 eV Core-core repulsion = 13802.804050 eV Total energy + Delta-G solvation = -2916.571396 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.90560 -40.78372 -39.19710 -37.06313 -35.37899 -32.36645 -31.54368 -30.77012 -29.46506 -26.94561 -23.96695 -23.63215 -22.57782 -21.60106 -20.25781 -18.89651 -17.83466 -17.42373 -17.26392 -17.07924 -16.24474 -15.73874 -15.64911 -15.48597 -15.01364 -14.65025 -14.12339 -13.57087 -13.32655 -13.19248 -12.90688 -12.86532 -12.64070 -12.30232 -12.13250 -11.64817 -11.22245 -10.90791 -10.23206 -9.87634 -9.60573 -8.77734 -8.51562 -6.30852 0.10786 0.24492 1.26143 1.39515 1.56288 1.71533 2.04600 2.14252 2.33224 2.73708 2.87706 3.03524 3.32057 3.93651 4.13650 4.18770 4.20334 4.46013 4.52799 4.70961 4.83244 4.88202 5.03330 5.27773 5.32294 5.38112 5.44114 5.57235 5.81940 6.01794 6.60973 6.81467 6.94636 7.34666 7.53091 8.47912 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.045133 B = 0.005018 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.246464 B = 5578.678956 C = 5831.896531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C -0.004 4.004 3 Si 1.022 2.978 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.253 1.253 7 C -0.354 4.354 8 H 0.141 0.859 9 N -0.160 5.160 10 C -0.081 4.081 11 C -0.072 4.072 12 O -0.263 6.263 13 C 0.099 3.901 14 C -0.147 4.147 15 C -0.076 4.076 16 C -0.150 4.150 17 C 0.117 3.883 18 O -0.507 6.507 19 C -0.188 4.188 20 C -0.096 4.096 21 N -0.293 5.293 22 H 0.279 0.721 23 H 0.182 0.818 24 H 0.140 0.860 25 H 0.172 0.828 26 H 0.162 0.838 27 H 0.412 0.588 28 H 0.111 0.889 29 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.528 -12.804 -0.438 12.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.216 4.216 3 Si 0.840 3.160 4 H -0.178 1.178 5 H -0.200 1.200 6 H -0.177 1.177 7 C -0.485 4.485 8 H 0.158 0.842 9 N 0.069 4.931 10 C -0.228 4.228 11 C -0.126 4.126 12 O -0.175 6.175 13 C 0.056 3.944 14 C -0.165 4.165 15 C -0.094 4.094 16 C -0.168 4.168 17 C 0.073 3.927 18 O -0.321 6.321 19 C -0.207 4.207 20 C -0.269 4.269 21 N -0.127 5.127 22 H 0.089 0.911 23 H 0.199 0.801 24 H 0.157 0.843 25 H 0.190 0.810 26 H 0.179 0.821 27 H 0.271 0.729 28 H 0.129 0.871 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.316 -11.152 -0.199 11.392 hybrid contribution 0.681 -0.407 -0.508 0.942 sum -1.635 -11.559 -0.707 11.695 Atomic orbital electron populations 1.70365 1.08363 1.29445 1.36785 1.26898 0.96556 1.04235 0.93940 0.84616 0.77579 0.73487 0.80317 1.17786 1.19955 1.17678 1.20645 0.93081 0.80649 1.54100 0.84194 1.44812 1.03466 1.04426 1.40421 1.21506 0.98602 0.83854 1.18879 1.18335 0.93036 0.81509 1.19770 1.84034 1.29583 1.13625 1.90246 1.18925 0.87627 0.94338 0.93528 1.21494 0.97704 0.99908 0.97444 1.21285 0.92664 0.97138 0.98309 1.21752 1.02043 1.00201 0.92848 1.18342 0.90024 0.96352 0.87996 1.84784 1.60748 1.59612 1.26943 1.21782 0.96978 1.03428 0.98498 1.23777 0.97827 0.92198 1.13092 1.78073 0.91956 1.15765 1.26903 0.91116 0.80110 0.84262 0.81034 0.82068 0.72911 0.87113 0.82330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.01 11.82 21.66 0.26 -46.75 15 2 C 0.00 -0.22 5.50 84.95 0.47 0.24 15 3 Si 1.02 38.49 29.55 68.60 2.03 40.51 15 4 H -0.25 -8.99 7.11 99.48 0.71 -8.28 15 5 H -0.27 -10.15 7.11 99.48 0.71 -9.44 15 6 H -0.25 -8.92 7.11 99.48 0.71 -8.21 15 7 C -0.35 -19.08 10.25 84.01 0.86 -18.22 15 8 H 0.14 6.60 7.83 -2.91 -0.02 6.57 15 9 N -0.16 -9.12 3.74 -190.08 -0.71 -9.83 15 10 C -0.08 -4.14 11.49 83.34 0.96 -3.18 15 11 C -0.07 -3.61 6.80 22.20 0.15 -3.46 15 12 O -0.26 -11.55 10.08 -38.33 -0.39 -11.94 15 13 C 0.10 3.63 5.12 22.51 0.12 3.74 15 14 C -0.15 -4.28 9.99 22.39 0.22 -4.05 15 15 C -0.08 -1.65 10.03 22.24 0.22 -1.42 15 16 C -0.15 -3.30 9.98 22.39 0.22 -3.08 15 17 C 0.12 3.26 6.70 22.49 0.15 3.41 15 18 O -0.51 -12.35 13.50 -92.45 -1.25 -13.60 15 19 C -0.19 -6.52 9.06 22.47 0.20 -6.32 15 20 C -0.10 -5.10 10.85 85.39 0.93 -4.18 15 21 N -0.29 -17.60 10.40 -56.53 -0.59 -18.18 15 22 H 0.28 14.61 8.31 -92.71 -0.77 13.84 15 23 H 0.18 7.83 8.06 -2.91 -0.02 7.80 15 24 H 0.14 3.72 8.06 -2.91 -0.02 3.70 15 25 H 0.17 2.29 8.06 -2.91 -0.02 2.26 15 26 H 0.16 2.47 8.06 -2.91 -0.02 2.45 15 27 H 0.41 5.36 9.06 -74.06 -0.67 4.69 15 28 H 0.11 4.23 8.06 -2.91 -0.02 4.21 15 29 H 0.16 7.88 7.56 -2.91 -0.02 7.86 15 Total: -1.00 -73.19 269.23 4.37 -68.82 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.52 Total: 27.46 kcal Atomic # 6 Polarization: -41.01 SS G_CDS: 4.50 Total: -36.50 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -1.04 Total: -74.77 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -1.63 Total: -25.53 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.51 kcal Total: -73.19 4.37 -68.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260351373.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.688 kcal (2) G-P(sol) polarization free energy of solvation -73.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds