Wall clock time and date at job start Mon Mar 30 2020 03:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00013 * 2 1 4 4 H 1.48494 * 109.46992 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47015 * 300.00005 * 3 2 1 6 6 H 1.48497 * 109.47189 * 59.99821 * 3 2 1 7 7 C 1.37881 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00035 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99652 * 0.02562 * 7 2 1 10 10 C 1.50707 * 109.46572 * 179.97438 * 9 7 2 11 11 C 1.38340 * 119.93992 * 270.21039 * 10 9 7 12 12 C 1.38302 * 120.23616 * 180.25575 * 11 10 9 13 13 C 1.38043 * 120.12321 * 359.79284 * 12 11 10 14 14 C 1.39306 * 119.87549 * 359.97228 * 13 12 11 15 15 C 1.48429 * 120.11635 * 180.02562 * 14 13 12 16 16 N 1.30787 * 126.35709 * 180.02562 * 15 14 13 17 17 O 1.21278 * 110.28234 * 180.02562 * 16 15 14 18 18 C 1.33949 * 109.98556 * 359.97438 * 17 16 15 19 19 O 1.35077 * 126.52075 * 179.97438 * 18 17 16 20 20 N 1.31744 * 106.95231 * 359.73381 * 18 17 16 21 21 C 1.37999 * 119.93673 * 89.99922 * 10 9 7 22 22 H 0.97000 * 120.00447 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47011 * 60.00064 * 9 7 2 24 24 H 1.08993 * 109.47283 * 299.99655 * 9 7 2 25 25 H 1.07992 * 119.88019 * 359.97438 * 11 10 9 26 26 H 1.08003 * 119.93416 * 179.76549 * 12 11 10 27 27 H 1.07995 * 120.05892 * 179.97438 * 13 12 11 28 28 H 0.96706 * 114.00495 * 0.02562 * 19 18 17 29 29 H 1.08002 * 120.06557 * 0.02562 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6824 -4.1666 -1.1982 12 6 3.5771 -5.2212 -1.2054 13 6 4.0272 -5.7559 -0.0150 14 6 3.5790 -5.2309 1.1950 15 6 4.0599 -5.8015 2.4781 16 7 3.7210 -5.4061 3.6778 17 8 4.2871 -6.0748 4.5164 18 6 5.0653 -6.9898 3.9235 19 8 5.8425 -7.9057 4.5412 20 7 4.9243 -6.8297 2.6235 21 6 2.6779 -4.1681 1.1964 22 1 -0.4851 0.8400 0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8902 25 1 2.3319 -3.7520 -2.1318 26 1 3.9239 -5.6273 -2.1442 27 1 4.7255 -6.5797 -0.0219 28 1 5.8063 -7.8655 5.5067 29 1 2.3267 -3.7579 2.1317 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260420389.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:40 Heat of formation + Delta-G solvation = 47.414591 kcal Electronic energy + Delta-G solvation = -16436.357358 eV Core-core repulsion = 13521.067351 eV Total energy + Delta-G solvation = -2915.290007 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.49122 -38.85346 -38.64327 -35.82497 -33.48231 -32.07538 -31.28613 -30.05661 -27.13517 -24.73244 -23.94995 -23.16551 -21.82107 -20.56703 -19.05038 -18.39738 -16.69578 -16.37099 -16.01976 -15.92301 -14.99809 -14.41506 -14.37703 -14.35289 -13.17476 -12.91541 -12.52496 -12.26674 -12.19791 -11.49789 -11.36638 -11.18041 -11.02139 -10.84965 -10.54882 -10.42911 -9.83465 -9.60093 -9.45539 -8.45261 -8.28121 -7.91720 -6.06915 -4.10827 0.94672 1.54519 1.92532 1.99379 2.71710 3.09253 3.28540 3.36284 3.41519 3.89347 4.32569 4.49039 4.76837 5.28004 5.39185 5.43932 5.53726 5.75485 5.87633 5.98059 6.14402 6.40002 6.47676 6.64712 6.89047 6.99972 7.06668 7.42995 7.56707 7.75237 7.88966 8.19384 8.27495 8.94457 9.53361 11.03072 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.028983 B = 0.005141 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.862675 B = 5444.595248 C = 5997.504999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.047 3.953 10 C -0.039 4.039 11 C -0.098 4.098 12 C -0.128 4.128 13 C -0.100 4.100 14 C -0.041 4.041 15 C 0.256 3.744 16 N -0.368 5.368 17 O 0.039 5.961 18 C 0.358 3.642 19 O -0.393 6.393 20 N -0.471 5.471 21 C -0.080 4.080 22 H 0.262 0.738 23 H 0.032 0.968 24 H 0.031 0.969 25 H 0.125 0.875 26 H 0.121 0.879 27 H 0.125 0.875 28 H 0.427 0.573 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.847 -13.808 6.386 17.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.011 3.989 10 C -0.039 4.039 11 C -0.117 4.117 12 C -0.146 4.146 13 C -0.120 4.120 14 C -0.043 4.043 15 C -0.014 4.014 16 N -0.087 5.087 17 O -0.018 6.018 18 C 0.100 3.900 19 O -0.191 6.191 20 N -0.221 5.221 21 C -0.100 4.100 22 H 0.072 0.928 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.143 0.857 26 H 0.139 0.861 27 H 0.143 0.857 28 H 0.284 0.716 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.495 -13.465 5.749 16.927 hybrid contribution 0.630 0.797 0.927 1.375 sum 9.125 -12.668 6.675 16.980 Atomic orbital electron populations 1.69962 1.06029 1.26787 1.50418 1.25009 0.94888 0.99293 0.95103 0.86477 0.80162 0.83438 0.77647 1.19648 1.20906 1.20908 1.21090 0.93110 0.89793 1.51113 0.92353 1.18386 0.92467 0.89390 0.98692 1.20640 0.96504 0.95418 0.91304 1.21333 0.96470 0.95243 0.98621 1.21009 0.98765 0.97576 0.97274 1.20914 1.00004 1.00054 0.90980 1.17303 1.01412 0.98806 0.86775 1.23826 0.92993 0.90753 0.93816 1.75003 1.18413 1.15788 0.99448 1.85484 1.45203 1.36151 1.34986 1.25864 0.89576 0.87490 0.87093 1.85083 1.59143 1.47183 1.27655 1.72326 1.21245 1.18988 1.09547 1.21105 0.95591 0.93945 0.99382 0.92841 0.94955 0.95097 0.85728 0.86063 0.85714 0.71575 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.49 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 15 4 H -0.27 -6.47 7.11 56.52 0.40 -6.06 15 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 7 C -0.51 -14.27 9.09 -34.44 -0.31 -14.58 15 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 15 9 C 0.05 1.20 5.10 -29.03 -0.15 1.06 15 10 C -0.04 -0.83 5.06 -104.67 -0.53 -1.36 15 11 C -0.10 -1.83 9.69 -39.52 -0.38 -2.21 15 12 C -0.13 -2.05 10.03 -39.63 -0.40 -2.45 15 13 C -0.10 -1.65 9.70 -39.26 -0.38 -2.03 15 14 C -0.04 -0.75 5.88 -104.89 -0.62 -1.37 15 15 C 0.26 4.41 7.80 -156.19 -1.22 3.19 15 16 N -0.37 -6.14 11.84 31.12 0.37 -5.78 15 17 O 0.04 0.50 11.31 -5.84 -0.07 0.43 15 18 C 0.36 4.24 9.80 52.45 0.51 4.76 15 19 O -0.39 -2.80 13.62 -40.10 -0.55 -3.34 15 20 N -0.47 -7.33 11.29 -13.79 -0.16 -7.48 15 21 C -0.08 -1.63 9.34 -39.26 -0.37 -2.00 15 22 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 23 H 0.03 0.85 8.09 -51.93 -0.42 0.43 15 24 H 0.03 0.83 8.08 -51.93 -0.42 0.41 15 25 H 0.12 2.20 8.06 -52.49 -0.42 1.77 15 26 H 0.12 1.55 8.06 -52.48 -0.42 1.12 15 27 H 0.12 1.85 7.87 -52.49 -0.41 1.43 15 28 H 0.43 0.04 9.06 45.56 0.41 0.46 15 29 H 0.13 2.65 7.87 -52.49 -0.41 2.24 15 LS Contribution 272.29 15.07 4.10 4.10 Total: -1.00 -33.06 272.29 -6.16 -39.22 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: -1.64 Total: -2.74 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -3.94 Total: -15.43 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.95 Total: -38.75 kcal Atomic # 8 Polarization: -2.30 SS G_CDS: -0.61 Total: -2.91 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -33.06 -6.16 -39.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260420389.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.631 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds