Wall clock time and date at job start Mon Mar 30 2020 03:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00013 * 2 1 4 4 H 1.48494 * 109.46992 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47015 * 300.00005 * 3 2 1 6 6 H 1.48497 * 109.47189 * 59.99821 * 3 2 1 7 7 C 1.37881 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00035 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99652 * 0.02562 * 7 2 1 10 10 C 1.50707 * 109.46572 * 179.97438 * 9 7 2 11 11 C 1.38340 * 119.93992 * 270.21039 * 10 9 7 12 12 C 1.38302 * 120.23616 * 180.25575 * 11 10 9 13 13 C 1.38043 * 120.12321 * 359.79284 * 12 11 10 14 14 C 1.39306 * 119.87549 * 359.97228 * 13 12 11 15 15 C 1.48429 * 120.11635 * 180.02562 * 14 13 12 16 16 N 1.30787 * 126.35709 * 180.02562 * 15 14 13 17 17 O 1.21278 * 110.28234 * 180.02562 * 16 15 14 18 18 C 1.33949 * 109.98556 * 359.97438 * 17 16 15 19 19 O 1.35077 * 126.52075 * 179.97438 * 18 17 16 20 20 N 1.31744 * 106.95231 * 359.73381 * 18 17 16 21 21 C 1.37999 * 119.93673 * 89.99922 * 10 9 7 22 22 H 0.97000 * 120.00447 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47011 * 60.00064 * 9 7 2 24 24 H 1.08993 * 109.47283 * 299.99655 * 9 7 2 25 25 H 1.07992 * 119.88019 * 359.97438 * 11 10 9 26 26 H 1.08003 * 119.93416 * 179.76549 * 12 11 10 27 27 H 1.07995 * 120.05892 * 179.97438 * 13 12 11 28 28 H 0.96706 * 114.00495 * 0.02562 * 19 18 17 29 29 H 1.08002 * 120.06557 * 0.02562 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6824 -4.1666 -1.1982 12 6 3.5771 -5.2212 -1.2054 13 6 4.0272 -5.7559 -0.0150 14 6 3.5790 -5.2309 1.1950 15 6 4.0599 -5.8015 2.4781 16 7 3.7210 -5.4061 3.6778 17 8 4.2871 -6.0748 4.5164 18 6 5.0653 -6.9898 3.9235 19 8 5.8425 -7.9057 4.5412 20 7 4.9243 -6.8297 2.6235 21 6 2.6779 -4.1681 1.1964 22 1 -0.4851 0.8400 0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8902 25 1 2.3319 -3.7520 -2.1318 26 1 3.9239 -5.6273 -2.1442 27 1 4.7255 -6.5797 -0.0219 28 1 5.8063 -7.8655 5.5067 29 1 2.3267 -3.7579 2.1317 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260420389.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:39 Heat of formation + Delta-G solvation = 22.428667 kcal Electronic energy + Delta-G solvation = -16437.440829 eV Core-core repulsion = 13521.067351 eV Total energy + Delta-G solvation = -2916.373478 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -46.63835 -40.26947 -39.39144 -37.01696 -35.43832 -33.36341 -32.99370 -31.37729 -29.02389 -25.99859 -25.42632 -24.75009 -22.99210 -22.03203 -20.18526 -19.50514 -18.53048 -17.84225 -17.41788 -16.73508 -16.60319 -16.12153 -15.86548 -15.13928 -14.62363 -14.54474 -14.22572 -13.84878 -13.41904 -13.24697 -13.03537 -12.65034 -12.59948 -12.40582 -12.24375 -12.07501 -11.55006 -11.42082 -10.85204 -10.62272 -9.69702 -9.45177 -8.21953 -6.34701 -0.30775 0.44023 0.54354 1.04142 1.38402 1.39080 1.42838 1.52902 2.14641 2.38950 2.74308 2.94687 3.09470 3.73989 4.08373 4.11561 4.26942 4.36518 4.55977 4.66611 4.73852 4.97189 5.15751 5.28230 5.34163 5.49402 5.54576 5.73110 5.95656 6.00020 6.02028 6.17831 6.77744 7.15777 7.33870 8.87954 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.028983 B = 0.005141 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.862675 B = 5444.595248 C = 5997.504999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.278 1.278 7 C -0.529 4.529 8 H 0.054 0.946 9 C 0.056 3.944 10 C -0.065 4.065 11 C -0.105 4.105 12 C -0.109 4.109 13 C -0.089 4.089 14 C -0.043 4.043 15 C 0.237 3.763 16 N -0.394 5.394 17 O 0.057 5.943 18 C 0.383 3.617 19 O -0.376 6.376 20 N -0.496 5.496 21 C -0.097 4.097 22 H 0.266 0.734 23 H 0.014 0.986 24 H 0.001 0.999 25 H 0.131 0.869 26 H 0.166 0.834 27 H 0.150 0.850 28 H 0.457 0.543 29 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.244 -15.130 6.459 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.567 4.567 8 H 0.072 0.928 9 C 0.019 3.981 10 C -0.065 4.065 11 C -0.124 4.124 12 C -0.127 4.127 13 C -0.109 4.109 14 C -0.045 4.045 15 C -0.032 4.032 16 N -0.111 5.111 17 O -0.003 6.003 18 C 0.126 3.874 19 O -0.179 6.179 20 N -0.246 5.246 21 C -0.117 4.117 22 H 0.075 0.925 23 H 0.032 0.968 24 H 0.019 0.981 25 H 0.149 0.851 26 H 0.183 0.817 27 H 0.168 0.832 28 H 0.321 0.679 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.904 -14.808 5.849 19.298 hybrid contribution -0.026 1.018 1.052 1.464 sum 10.878 -13.790 6.902 18.872 Atomic orbital electron populations 1.70079 1.07604 1.27924 1.51262 1.25911 0.95774 1.03064 0.94572 0.85401 0.78894 0.78801 0.77999 1.19039 1.19858 1.20345 1.21396 0.93074 0.91208 1.50976 0.92772 1.18117 0.92819 0.90878 0.96240 1.20307 0.97439 0.95550 0.93212 1.21439 0.97195 0.96196 0.97581 1.21392 0.96623 0.95655 0.98982 1.21265 0.99401 0.99958 0.90270 1.17419 1.00602 0.97981 0.88486 1.23677 0.94184 0.91846 0.93540 1.74996 1.19314 1.16914 0.99884 1.85439 1.45023 1.36063 1.33778 1.25810 0.88319 0.86772 0.86543 1.85132 1.57250 1.44978 1.30521 1.72221 1.21842 1.19068 1.11488 1.20900 0.97166 0.95455 0.98163 0.92521 0.96802 0.98096 0.85120 0.81670 0.83205 0.67889 0.87451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.20 13.29 21.45 0.28 -55.92 15 2 C 0.01 0.29 5.46 84.66 0.46 0.75 15 3 Si 0.96 44.71 29.54 68.60 2.03 46.74 15 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 5 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 7 C -0.53 -30.47 9.09 25.60 0.23 -30.24 15 8 H 0.05 3.09 7.74 -2.91 -0.02 3.07 15 9 C 0.06 3.04 5.10 29.11 0.15 3.19 15 10 C -0.07 -2.90 5.06 -19.89 -0.10 -3.00 15 11 C -0.11 -3.89 9.69 22.31 0.22 -3.68 15 12 C -0.11 -3.19 10.03 22.24 0.22 -2.97 15 13 C -0.09 -2.74 9.70 22.48 0.22 -2.52 15 14 C -0.04 -1.57 5.88 -20.04 -0.12 -1.68 15 15 C 0.24 8.01 7.80 137.32 1.07 9.08 15 16 N -0.39 -13.03 11.84 -58.52 -0.69 -13.72 15 17 O 0.06 1.38 11.31 94.19 1.06 2.44 15 18 C 0.38 8.06 9.80 130.35 1.28 9.33 15 19 O -0.38 -3.87 13.62 -61.37 -0.84 -4.71 15 20 N -0.50 -14.40 11.29 -427.45 -4.82 -19.23 15 21 C -0.10 -4.10 9.34 22.48 0.21 -3.89 15 22 H 0.27 15.03 8.31 -92.71 -0.77 14.26 15 23 H 0.01 0.77 8.09 -2.39 -0.02 0.75 15 24 H 0.00 0.04 8.08 -2.39 -0.02 0.02 15 25 H 0.13 4.57 8.06 -2.91 -0.02 4.55 15 26 H 0.17 3.42 8.06 -2.91 -0.02 3.39 15 27 H 0.15 3.89 7.87 -2.91 -0.02 3.87 15 28 H 0.46 -1.94 9.06 -74.05 -0.67 -2.61 15 29 H 0.11 4.83 7.87 -2.91 -0.02 4.81 15 Total: -1.00 -73.89 272.29 1.39 -72.50 By element: Atomic # 1 Polarization: -3.01 SS G_CDS: 0.53 Total: -2.48 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: 3.84 Total: -25.63 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -5.23 Total: -88.87 kcal Atomic # 8 Polarization: -2.49 SS G_CDS: 0.23 Total: -2.27 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -73.89 1.39 -72.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260420389.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.933 kcal (2) G-P(sol) polarization free energy of solvation -73.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds