Wall clock time and date at job start Mon Mar 30 2020 03:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30722 * 1 3 3 Si 1.86801 * 119.99930 * 2 1 4 4 H 1.48498 * 109.47666 * 274.33564 * 3 2 1 5 5 H 1.48504 * 109.47205 * 34.33751 * 3 2 1 6 6 H 1.48504 * 109.47268 * 154.33355 * 3 2 1 7 7 C 1.40210 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99936 * 342.66245 * 7 2 1 9 9 C 1.40175 * 119.99676 * 162.66677 * 7 2 1 10 10 C 1.41536 * 121.49240 * 315.04206 * 9 7 2 11 11 N 1.38559 * 120.50699 * 0.04672 * 10 9 7 12 12 C 1.40206 * 118.99452 * 180.02562 * 10 9 7 13 13 O 1.35701 * 118.82216 * 180.02562 * 12 10 9 14 14 N 1.31257 * 122.35618 * 0.06567 * 12 10 9 15 15 C 1.33880 * 122.88457 * 359.97438 * 14 12 10 16 16 C 1.40954 * 120.79538 * 180.22773 * 15 14 12 17 17 O 1.35806 * 120.15945 * 0.06924 * 16 15 14 18 18 C 1.37952 * 119.67709 * 180.28706 * 16 15 14 19 19 C 1.38866 * 120.78038 * 359.50173 * 18 16 15 20 20 C 1.37802 * 120.61749 * 0.23457 * 19 18 16 21 21 C 1.39392 * 119.78995 * 0.02562 * 20 19 18 22 22 H 0.97004 * 119.99776 * 0.02562 * 1 2 3 23 23 H 0.96994 * 120.00424 * 172.05603 * 11 10 9 24 24 H 0.97002 * 120.00274 * 352.04705 * 11 10 9 25 25 H 0.96699 * 114.00530 * 270.02066 * 13 12 10 26 26 H 0.96697 * 114.00015 * 270.22358 * 17 16 15 27 27 H 1.08001 * 119.61160 * 179.77968 * 18 16 15 28 28 H 1.08000 * 119.68678 * 180.24964 * 19 18 16 29 29 H 1.08001 * 120.10134 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.3971 2.0995 -1.3960 5 1 1.4875 2.6245 0.7898 6 1 3.5816 1.4155 0.6064 7 6 2.0083 -1.2142 -0.0005 8 1 1.5051 -2.1284 0.2778 9 6 3.3623 -1.2416 -0.3622 10 6 3.8396 -0.5382 -1.4939 11 7 2.9713 0.2027 -2.2793 12 6 5.2045 -0.6023 -1.8081 13 8 5.6584 0.0738 -2.8936 14 7 6.0588 -1.2934 -1.0902 15 6 5.7000 -1.9900 -0.0046 16 6 6.6557 -2.7135 0.7370 17 8 7.9594 -2.7105 0.3567 18 6 6.2594 -3.4282 1.8485 19 6 4.9308 -3.4354 2.2522 20 6 3.9790 -2.7316 1.5467 21 6 4.3511 -2.0052 0.4167 22 1 -0.4850 0.8401 -0.0004 23 1 3.3198 0.7731 -2.9822 24 1 2.0148 0.1511 -2.1264 25 1 5.6403 -0.4398 -3.7127 26 1 8.1905 -3.4177 -0.2610 27 1 6.9920 -3.9850 2.4139 28 1 4.6408 -3.9978 3.1274 29 1 2.9481 -2.7427 1.8684 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260435951.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:14 Heat of formation + Delta-G solvation = -29.730599 kcal Electronic energy + Delta-G solvation = -17630.641386 eV Core-core repulsion = 14712.006113 eV Total energy + Delta-G solvation = -2918.635273 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.74971 -37.93498 -36.31925 -35.22867 -34.22842 -32.97645 -30.97014 -28.19224 -27.91516 -25.82875 -22.49153 -22.05437 -20.68580 -18.69769 -17.85214 -17.62692 -16.84404 -16.02020 -15.25975 -15.10250 -14.81687 -14.40211 -13.94625 -13.73343 -13.25065 -12.87692 -12.53259 -11.90560 -11.77310 -11.53975 -11.15542 -10.93544 -10.78010 -10.61221 -10.31947 -9.96330 -9.82328 -9.15599 -8.47624 -8.29525 -7.25724 -7.24494 -6.63567 -4.63052 1.30799 1.91840 2.76789 3.07308 3.13853 3.21399 3.69755 3.83280 4.35692 4.53100 4.88846 4.94377 5.13029 5.58720 5.76373 5.90473 6.03277 6.10997 6.38685 6.59176 6.73252 6.74801 6.89248 7.11193 7.23622 7.37707 7.59691 7.89182 8.07565 8.15868 8.33530 8.35556 8.64840 8.74445 9.17935 9.74232 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.023912 B = 0.010701 C = 0.008124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.703609 B = 2616.004063 C = 3445.725195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.076 3.924 3 Si 0.923 3.077 4 H -0.251 1.251 5 H -0.296 1.296 6 H -0.257 1.257 7 C -0.423 4.423 8 H 0.102 0.898 9 C 0.075 3.925 10 C 0.021 3.979 11 N -0.870 5.870 12 C 0.299 3.701 13 O -0.491 6.491 14 N -0.555 5.555 15 C 0.134 3.866 16 C 0.089 3.911 17 O -0.487 6.487 18 C -0.134 4.134 19 C -0.165 4.165 20 C -0.065 4.065 21 C -0.120 4.120 22 H 0.291 0.709 23 H 0.388 0.612 24 H 0.397 0.603 25 H 0.379 0.621 26 H 0.374 0.626 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.501 -2.721 -1.535 4.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.145 4.145 3 Si 0.749 3.251 4 H -0.176 1.176 5 H -0.224 1.224 6 H -0.181 1.181 7 C -0.453 4.453 8 H 0.120 0.880 9 C 0.062 3.938 10 C -0.085 4.085 11 N -0.419 5.419 12 C 0.112 3.888 13 O -0.296 6.296 14 N -0.278 5.278 15 C 0.009 3.991 16 C 0.043 3.957 17 O -0.295 6.295 18 C -0.155 4.155 19 C -0.184 4.184 20 C -0.084 4.084 21 C -0.125 4.125 22 H 0.101 0.899 23 H 0.216 0.784 24 H 0.230 0.770 25 H 0.234 0.766 26 H 0.228 0.772 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.286 -1.717 -0.988 4.721 hybrid contribution -0.903 0.177 -0.665 1.135 sum 3.383 -1.539 -1.653 4.067 Atomic orbital electron populations 1.69634 1.08096 1.30970 1.32680 1.26267 0.94862 1.01980 0.91405 0.86250 0.80431 0.78855 0.79592 1.17565 1.22417 1.18099 1.19031 0.91882 0.96316 1.38079 0.88039 1.18405 0.93034 0.93039 0.89297 1.18714 0.89312 1.05557 0.94957 1.42121 1.07899 1.51809 1.40028 1.18505 0.86104 0.94483 0.89755 1.84772 1.87658 1.40007 1.17210 1.66690 1.37354 1.13764 1.10002 1.18452 0.90747 0.97153 0.92725 1.18121 0.82543 0.99902 0.95165 1.84779 1.22725 1.55758 1.66207 1.21008 0.96280 1.00426 0.97760 1.20666 0.92551 1.03633 1.01585 1.21045 0.99361 0.94232 0.93722 1.19700 0.92303 1.03531 0.96940 0.89859 0.78438 0.77021 0.76632 0.77212 0.86544 0.86739 0.85605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.67 13.92 55.56 0.77 -17.90 15 2 C 0.08 1.79 4.20 -17.28 -0.07 1.72 15 3 Si 0.92 20.20 24.23 -169.99 -4.12 16.09 15 4 H -0.25 -5.10 6.04 56.52 0.34 -4.76 15 5 H -0.30 -6.36 7.11 56.52 0.40 -5.96 15 6 H -0.26 -6.34 7.11 56.52 0.40 -5.94 15 7 C -0.42 -10.26 8.29 -38.11 -0.32 -10.58 15 8 H 0.10 2.55 7.74 -52.49 -0.41 2.14 15 9 C 0.07 1.79 4.83 -104.26 -0.50 1.29 15 10 C 0.02 0.47 5.37 -82.83 -0.44 0.03 15 11 N -0.87 -17.48 5.82 32.97 0.19 -17.29 15 12 C 0.30 6.80 7.71 -17.06 -0.13 6.67 15 13 O -0.49 -9.50 12.76 -18.81 -0.24 -9.74 15 14 N -0.55 -13.29 10.03 -10.99 -0.11 -13.40 15 15 C 0.13 3.14 6.63 -84.77 -0.56 2.58 15 16 C 0.09 1.83 6.76 -38.66 -0.26 1.57 15 17 O -0.49 -9.16 13.28 -19.13 -0.25 -9.41 15 18 C -0.13 -2.41 9.94 -39.45 -0.39 -2.81 15 19 C -0.17 -2.95 10.02 -39.51 -0.40 -3.34 15 20 C -0.06 -1.33 9.49 -39.31 -0.37 -1.70 15 21 C -0.12 -2.80 5.90 -104.64 -0.62 -3.41 15 22 H 0.29 6.26 8.29 -40.82 -0.34 5.92 15 23 H 0.39 6.86 8.17 -40.82 -0.33 6.53 15 24 H 0.40 8.15 5.66 -40.82 -0.23 7.92 15 25 H 0.38 5.36 9.06 45.56 0.41 5.78 15 26 H 0.37 5.22 9.06 45.56 0.41 5.63 15 27 H 0.12 1.75 8.06 -52.49 -0.42 1.32 15 28 H 0.11 1.67 8.06 -52.49 -0.42 1.25 15 29 H 0.13 2.48 7.13 -52.49 -0.37 2.11 15 LS Contribution 250.67 15.07 3.78 3.78 Total: -1.00 -29.32 250.67 -4.61 -33.93 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -0.56 Total: 21.93 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -4.07 Total: -7.99 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.86 Total: -48.58 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.49 Total: -19.15 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.12 Total: 16.09 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.32 -4.61 -33.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260435951.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.199 kcal (2) G-P(sol) polarization free energy of solvation -29.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds