Wall clock time and date at job start Mon Mar 30 2020 03:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30722 * 1 3 3 Si 1.86801 * 119.99930 * 2 1 4 4 H 1.48498 * 109.47666 * 274.33564 * 3 2 1 5 5 H 1.48504 * 109.47205 * 34.33751 * 3 2 1 6 6 H 1.48504 * 109.47268 * 154.33355 * 3 2 1 7 7 C 1.40210 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99936 * 342.66245 * 7 2 1 9 9 C 1.40175 * 119.99676 * 162.66677 * 7 2 1 10 10 C 1.41536 * 121.49240 * 315.04206 * 9 7 2 11 11 N 1.38559 * 120.50699 * 0.04672 * 10 9 7 12 12 C 1.40206 * 118.99452 * 180.02562 * 10 9 7 13 13 O 1.35701 * 118.82216 * 180.02562 * 12 10 9 14 14 N 1.31257 * 122.35618 * 0.06567 * 12 10 9 15 15 C 1.33880 * 122.88457 * 359.97438 * 14 12 10 16 16 C 1.40954 * 120.79538 * 180.22773 * 15 14 12 17 17 O 1.35806 * 120.15945 * 0.06924 * 16 15 14 18 18 C 1.37952 * 119.67709 * 180.28706 * 16 15 14 19 19 C 1.38866 * 120.78038 * 359.50173 * 18 16 15 20 20 C 1.37802 * 120.61749 * 0.23457 * 19 18 16 21 21 C 1.39392 * 119.78995 * 0.02562 * 20 19 18 22 22 H 0.97004 * 119.99776 * 0.02562 * 1 2 3 23 23 H 0.96994 * 120.00424 * 172.05603 * 11 10 9 24 24 H 0.97002 * 120.00274 * 352.04705 * 11 10 9 25 25 H 0.96699 * 114.00530 * 270.02066 * 13 12 10 26 26 H 0.96697 * 114.00015 * 270.22358 * 17 16 15 27 27 H 1.08001 * 119.61160 * 179.77968 * 18 16 15 28 28 H 1.08000 * 119.68678 * 180.24964 * 19 18 16 29 29 H 1.08001 * 120.10134 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.3971 2.0995 -1.3960 5 1 1.4875 2.6245 0.7898 6 1 3.5816 1.4155 0.6064 7 6 2.0083 -1.2142 -0.0005 8 1 1.5051 -2.1284 0.2778 9 6 3.3623 -1.2416 -0.3622 10 6 3.8396 -0.5382 -1.4939 11 7 2.9713 0.2027 -2.2793 12 6 5.2045 -0.6023 -1.8081 13 8 5.6584 0.0738 -2.8936 14 7 6.0588 -1.2934 -1.0902 15 6 5.7000 -1.9900 -0.0046 16 6 6.6557 -2.7135 0.7370 17 8 7.9594 -2.7105 0.3567 18 6 6.2594 -3.4282 1.8485 19 6 4.9308 -3.4354 2.2522 20 6 3.9790 -2.7316 1.5467 21 6 4.3511 -2.0052 0.4167 22 1 -0.4850 0.8401 -0.0004 23 1 3.3198 0.7731 -2.9822 24 1 2.0148 0.1511 -2.1264 25 1 5.6403 -0.4398 -3.7127 26 1 8.1905 -3.4177 -0.2610 27 1 6.9920 -3.9850 2.4139 28 1 4.6408 -3.9978 3.1274 29 1 2.9481 -2.7427 1.8684 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260435951.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:14 Heat of formation + Delta-G solvation = -56.454390 kcal Electronic energy + Delta-G solvation = -17631.800216 eV Core-core repulsion = 14712.006113 eV Total energy + Delta-G solvation = -2919.794104 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.40423 -39.50948 -37.89386 -36.83724 -35.87513 -34.69251 -32.62721 -29.80648 -29.53789 -27.56480 -24.13161 -23.69142 -22.34120 -20.36610 -19.50727 -19.20634 -18.46206 -17.64160 -16.95475 -16.75029 -16.44815 -15.96473 -15.53391 -15.27946 -14.98993 -14.49227 -14.22586 -13.60739 -13.37635 -13.14071 -12.82364 -12.56543 -12.37029 -12.30480 -11.99854 -11.72001 -11.36711 -10.86665 -10.14942 -9.98510 -9.00690 -8.87310 -8.31326 -6.42084 -0.32590 0.28827 1.06545 1.30848 1.39501 1.43857 2.05592 2.12644 2.61323 2.93924 3.29947 3.38552 3.47913 4.09224 4.25644 4.26408 4.41660 4.60662 4.79986 4.97174 5.14571 5.21940 5.28464 5.56253 5.65458 5.77065 6.05690 6.09657 6.36941 6.54296 6.65720 6.96515 7.00786 7.19750 7.43464 8.04718 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.023912 B = 0.010701 C = 0.008124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.703609 B = 2616.004063 C = 3445.725195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.064 3.936 3 Si 0.960 3.040 4 H -0.227 1.227 5 H -0.289 1.289 6 H -0.299 1.299 7 C -0.446 4.446 8 H 0.079 0.921 9 C 0.052 3.948 10 C 0.015 3.985 11 N -0.861 5.861 12 C 0.294 3.706 13 O -0.490 6.490 14 N -0.565 5.565 15 C 0.096 3.904 16 C 0.085 3.915 17 O -0.494 6.494 18 C -0.125 4.125 19 C -0.137 4.137 20 C -0.090 4.090 21 C -0.138 4.138 22 H 0.299 0.701 23 H 0.400 0.600 24 H 0.397 0.603 25 H 0.404 0.596 26 H 0.396 0.604 27 H 0.157 0.843 28 H 0.157 0.843 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.959 -3.287 -1.163 6.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.155 4.155 3 Si 0.786 3.214 4 H -0.150 1.150 5 H -0.217 1.217 6 H -0.225 1.225 7 C -0.477 4.477 8 H 0.097 0.903 9 C 0.040 3.960 10 C -0.092 4.092 11 N -0.410 5.410 12 C 0.105 3.895 13 O -0.298 6.298 14 N -0.288 5.288 15 C -0.027 4.027 16 C 0.039 3.961 17 O -0.305 6.305 18 C -0.145 4.145 19 C -0.156 4.156 20 C -0.109 4.109 21 C -0.143 4.143 22 H 0.110 0.890 23 H 0.230 0.770 24 H 0.229 0.771 25 H 0.262 0.738 26 H 0.253 0.747 27 H 0.175 0.825 28 H 0.174 0.826 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.744 -2.298 -0.658 6.221 hybrid contribution -1.073 0.200 -0.751 1.326 sum 4.670 -2.097 -1.409 5.310 Atomic orbital electron populations 1.69623 1.08479 1.31838 1.34463 1.26470 0.95070 1.02766 0.91181 0.85755 0.77383 0.77749 0.80496 1.15001 1.21689 1.22512 1.18851 0.92360 0.95947 1.40557 0.90283 1.18608 0.93208 0.94248 0.89987 1.18812 0.89895 1.05579 0.94911 1.42042 1.07547 1.51526 1.39932 1.18668 0.86129 0.94188 0.90539 1.84700 1.87310 1.40215 1.17590 1.66745 1.37893 1.13844 1.10354 1.18937 0.91643 0.98611 0.93533 1.18346 0.82692 0.99521 0.95570 1.84708 1.21628 1.57203 1.66947 1.21425 0.97067 0.99371 0.96672 1.21163 0.91887 1.01164 1.01344 1.21194 1.00282 0.95537 0.93930 1.20014 0.92475 1.03886 0.97895 0.88970 0.77029 0.77129 0.73830 0.74659 0.82504 0.82552 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.30 13.92 21.87 0.30 -39.00 15 2 C 0.06 3.05 4.20 85.34 0.36 3.41 15 3 Si 0.96 41.80 24.23 68.60 1.66 43.46 15 4 H -0.23 -8.82 6.04 99.48 0.60 -8.22 15 5 H -0.29 -12.09 7.11 99.48 0.71 -11.38 15 6 H -0.30 -15.07 7.11 99.48 0.71 -14.36 15 7 C -0.45 -22.41 8.29 23.22 0.19 -22.22 15 8 H 0.08 4.20 7.74 -2.91 -0.02 4.17 15 9 C 0.05 2.57 4.83 -19.63 -0.09 2.48 15 10 C 0.01 0.68 5.37 39.37 0.21 0.89 15 11 N -0.86 -34.14 5.82 -49.61 -0.29 -34.42 15 12 C 0.29 13.24 7.71 85.26 0.66 13.90 15 13 O -0.49 -18.18 12.76 -90.21 -1.15 -19.33 15 14 N -0.56 -26.72 10.03 -302.02 -3.03 -29.75 15 15 C 0.10 4.44 6.63 40.25 0.27 4.71 15 16 C 0.08 3.30 6.76 22.87 0.15 3.45 15 17 O -0.49 -17.26 13.28 -91.37 -1.21 -18.48 15 18 C -0.13 -4.02 9.94 22.35 0.22 -3.79 15 19 C -0.14 -4.44 10.02 22.32 0.22 -4.21 15 20 C -0.09 -3.66 9.49 22.44 0.21 -3.45 15 21 C -0.14 -6.49 5.90 -19.88 -0.12 -6.61 15 22 H 0.30 12.95 8.29 -92.71 -0.77 12.19 15 23 H 0.40 13.58 8.17 -92.71 -0.76 12.82 15 24 H 0.40 16.18 5.66 -92.71 -0.53 15.66 15 25 H 0.40 10.59 9.06 -74.06 -0.67 9.92 15 26 H 0.40 9.93 9.06 -74.06 -0.67 9.26 15 27 H 0.16 3.80 8.06 -2.91 -0.02 3.77 15 28 H 0.16 3.77 8.06 -2.91 -0.02 3.75 15 29 H 0.12 4.99 7.13 -2.91 -0.02 4.97 15 Total: -1.00 -63.54 250.67 -2.90 -66.43 By element: Atomic # 1 Polarization: 44.00 SS G_CDS: -1.47 Total: 42.53 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 2.29 Total: -11.45 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -3.01 Total: -103.17 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -2.36 Total: -37.80 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.66 Total: 43.46 kcal Total: -63.54 -2.90 -66.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260435951.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.980 kcal (2) G-P(sol) polarization free energy of solvation -63.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds