Wall clock time and date at job start Mon Mar 30 2020 03:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37973 * 120.43570 * 2 1 4 4 C 1.39934 * 119.33502 * 180.25302 * 3 2 1 5 5 C 1.35580 * 120.25928 * 359.43402 * 4 3 2 6 6 N 1.35924 * 120.73803 * 0.57704 * 5 4 3 7 7 C 1.38195 * 132.67566 * 179.71175 * 6 5 4 8 8 C 1.39623 * 125.42197 * 0.02837 * 7 6 5 9 9 H 1.08002 * 120.00303 * 0.02562 * 8 7 6 10 10 C 1.40075 * 120.00180 * 179.97438 * 8 7 6 11 11 N 1.30811 * 119.99521 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00353 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47048 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47148 * 120.00196 * 12 10 8 15 15 H 1.48502 * 109.46980 * 240.00099 * 12 10 8 16 16 N 1.32839 * 109.15127 * 179.97438 * 7 6 5 17 17 C 1.33422 * 109.69227 * 0.02562 * 16 7 6 18 18 C 1.46836 * 126.19602 * 179.97438 * 17 16 7 19 19 O 1.21614 * 120.00164 * 255.59881 * 18 17 16 20 20 O 1.34899 * 120.00293 * 75.60013 * 18 17 16 21 21 C 1.37000 * 120.35947 * 359.70271 * 6 5 4 22 22 H 1.09004 * 109.46829 * 95.55535 * 1 2 3 23 23 H 1.08994 * 109.47439 * 215.55712 * 1 2 3 24 24 H 1.08998 * 109.46980 * 335.56030 * 1 2 3 25 25 H 1.07997 * 120.33192 * 359.97278 * 3 2 1 26 26 H 1.08004 * 119.87226 * 179.71861 * 4 3 2 27 27 H 1.07999 * 119.63561 * 180.27871 * 5 4 3 28 28 H 0.97008 * 119.99878 * 179.97438 * 11 10 8 29 29 H 0.96697 * 117.00444 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1896 0.0000 4 6 3.6050 1.1627 -0.0054 5 6 4.2656 -0.0212 0.0010 6 7 3.5840 -1.1972 0.0010 7 6 3.9931 -2.5171 0.0014 8 6 5.3195 -2.9532 0.0027 9 1 6.1247 -2.2333 0.0038 10 6 5.6061 -4.3243 0.0036 11 7 4.6309 -5.1962 0.0037 12 14 7.3806 -4.9078 0.0059 13 1 8.2881 -3.7323 0.0060 14 1 7.6307 -5.7269 1.2190 15 1 7.6336 -5.7279 -1.2060 16 7 2.9236 -3.3050 0.0017 17 6 1.8166 -2.5602 0.0008 18 6 0.4357 -3.0593 0.0003 19 8 -0.2247 -3.0199 -1.0202 20 8 -0.1006 -3.5614 1.1317 21 6 2.2140 -1.2033 0.0005 22 1 -0.3633 -0.0995 -1.0229 23 1 -0.3634 -0.8360 0.5976 24 1 -0.3633 0.9356 0.4252 25 1 1.6785 2.1320 -0.0004 26 1 4.1608 2.0888 -0.0100 27 1 5.3456 -0.0302 0.0013 28 1 4.8292 -6.1458 0.0040 29 1 -1.0129 -3.8782 1.0822 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260439703.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:41 Heat of formation + Delta-G solvation = -15.223019 kcal Electronic energy + Delta-G solvation = -17437.669307 eV Core-core repulsion = 14519.663129 eV Total energy + Delta-G solvation = -2918.006177 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.26878 -39.16013 -36.44746 -35.39089 -33.61703 -33.27404 -30.19355 -28.91207 -26.49893 -25.81518 -23.40387 -21.92343 -20.78993 -19.82786 -17.52766 -17.28850 -16.40963 -15.99729 -15.48381 -14.90055 -14.59926 -14.32553 -14.19434 -13.34952 -13.09869 -12.82003 -12.62379 -12.13188 -11.68459 -11.41100 -11.15607 -10.97581 -10.92361 -10.79626 -10.72443 -10.32697 -10.11573 -9.49892 -9.26608 -8.56726 -8.12577 -6.79005 -6.69512 -4.41745 1.63086 2.17000 2.79873 2.99318 3.03823 3.08460 3.57750 3.81688 4.07931 4.16571 4.34474 5.25149 5.31201 5.40855 5.57483 5.69336 5.91362 5.95144 5.99134 6.09416 6.24521 6.58351 6.68799 6.88186 6.94807 7.00263 7.09455 7.25907 7.62377 7.84168 7.98923 8.52478 8.60567 8.79906 9.52276 10.22577 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.022507 B = 0.009186 C = 0.006745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.737245 B = 3047.424505 C = 4150.076998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.033 4.033 3 C -0.166 4.166 4 C -0.180 4.180 5 C 0.086 3.914 6 N -0.406 5.406 7 C 0.359 3.641 8 C -0.443 4.443 9 H 0.088 0.912 10 C 0.076 3.924 11 N -0.735 5.735 12 Si 0.922 3.078 13 H -0.261 1.261 14 H -0.272 1.272 15 H -0.272 1.272 16 N -0.438 5.438 17 C -0.013 4.013 18 C 0.593 3.407 19 O -0.521 6.521 20 O -0.508 6.508 21 C -0.041 4.041 22 H 0.072 0.928 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.117 0.883 26 H 0.129 0.871 27 H 0.149 0.851 28 H 0.279 0.721 29 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.172 6.562 1.862 7.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.035 4.035 3 C -0.187 4.187 4 C -0.202 4.202 5 C -0.038 4.038 6 N -0.083 5.083 7 C 0.122 3.878 8 C -0.482 4.482 9 H 0.106 0.894 10 C -0.149 4.149 11 N -0.358 5.358 12 Si 0.746 3.254 13 H -0.185 1.185 14 H -0.197 1.197 15 H -0.197 1.197 16 N -0.158 5.158 17 C -0.151 4.151 18 C 0.436 3.564 19 O -0.408 6.408 20 O -0.318 6.318 21 C -0.149 4.149 22 H 0.091 0.909 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.135 0.865 26 H 0.146 0.854 27 H 0.167 0.833 28 H 0.090 0.910 29 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -1.946 5.528 1.605 6.076 hybrid contribution 0.233 0.372 -0.049 0.442 sum -1.714 5.900 1.556 6.338 Atomic orbital electron populations 1.20641 0.91220 1.01776 1.02289 1.19165 0.95136 0.90619 0.98607 1.20728 0.93629 0.96323 1.08013 1.20343 0.94647 0.96094 1.09090 1.21344 0.97805 0.84133 1.00481 1.42795 1.05869 1.06743 1.52851 1.20239 0.94872 0.73784 0.98911 1.18201 0.88284 0.92947 1.48799 0.89354 1.25765 0.99595 0.96065 0.93476 1.70028 1.32906 1.02758 1.30134 0.86042 0.81237 0.79485 0.78677 1.18467 1.19690 1.19717 1.71333 0.93989 1.27436 1.22998 1.19264 0.91304 0.88839 1.15668 1.19633 0.85719 0.71326 0.79770 1.90846 1.62751 1.53521 1.33705 1.84821 1.34190 1.73887 1.38863 1.18160 0.83892 0.93280 1.19547 0.90934 0.92425 0.91607 0.86470 0.85353 0.83344 0.91007 0.74346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.71 9.42 36.01 0.34 -1.37 15 2 C -0.03 -0.67 5.92 -104.22 -0.62 -1.28 15 3 C -0.17 -2.90 9.80 -39.04 -0.38 -3.28 15 4 C -0.18 -3.06 9.99 -39.90 -0.40 -3.46 15 5 C 0.09 1.69 10.77 -16.69 -0.18 1.51 15 6 N -0.41 -9.86 2.96 -60.20 -0.18 -10.04 15 7 C 0.36 9.77 7.46 -155.24 -1.16 8.61 15 8 C -0.44 -11.43 9.18 -38.38 -0.35 -11.78 15 9 H 0.09 2.06 7.61 -52.49 -0.40 1.66 15 10 C 0.08 1.90 5.50 -17.30 -0.10 1.80 15 11 N -0.73 -19.64 11.85 55.56 0.66 -18.98 15 12 Si 0.92 18.10 29.56 -169.99 -5.03 13.07 15 13 H -0.26 -4.93 7.11 56.52 0.40 -4.53 15 14 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 15 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 16 N -0.44 -12.56 9.32 -8.70 -0.08 -12.64 15 17 C -0.01 -0.35 7.00 -82.50 -0.58 -0.93 15 18 C 0.59 13.54 5.98 34.21 0.20 13.74 15 19 O -0.52 -12.22 17.86 -19.35 -0.35 -12.57 15 20 O -0.51 -9.54 13.45 -41.04 -0.55 -10.10 15 21 C -0.04 -1.00 6.66 -83.87 -0.56 -1.56 15 22 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 23 H 0.06 0.99 6.43 -51.93 -0.33 0.66 15 24 H 0.06 0.88 8.06 -51.93 -0.42 0.46 15 25 H 0.12 1.66 8.06 -52.49 -0.42 1.24 15 26 H 0.13 1.69 8.06 -52.48 -0.42 1.27 15 27 H 0.15 2.52 7.82 -52.49 -0.41 2.11 15 28 H 0.28 6.72 8.30 -40.82 -0.34 6.38 15 29 H 0.40 4.90 9.11 45.56 0.42 5.31 15 LS Contribution 265.58 15.07 4.00 4.00 Total: -1.00 -32.80 265.58 -6.85 -39.65 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -1.55 Total: 5.60 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -3.78 Total: 2.01 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.40 Total: -41.66 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.90 Total: -22.66 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.80 -6.85 -39.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260439703.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.427 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds