Wall clock time and date at job start Mon Mar 30 2020 04:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99989 * 2 1 4 4 H 1.48499 * 109.47296 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47032 * 300.00226 * 3 2 1 6 6 H 1.48502 * 109.47101 * 59.99768 * 3 2 1 7 7 C 1.38877 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00241 * 169.54949 * 7 2 1 9 9 N 1.36899 * 119.99708 * 349.55838 * 7 2 1 10 10 C 1.38035 * 119.99837 * 124.59509 * 9 7 2 11 11 N 1.33358 * 120.96215 * 174.91780 * 10 9 7 12 12 C 1.31916 * 120.91354 * 179.97438 * 11 10 9 13 13 N 1.31847 * 122.91562 * 359.97438 * 12 11 10 14 14 C 1.32545 * 120.66923 * 359.97438 * 13 12 11 15 15 O 1.34068 * 136.39425 * 180.02562 * 14 13 12 16 16 N 1.20993 * 112.96783 * 179.97438 * 15 14 13 17 17 C 1.30213 * 113.39003 * 359.97438 * 16 15 14 18 18 C 1.39764 * 120.96441 * 354.87193 * 10 9 7 19 19 C 1.46497 * 120.00455 * 304.58875 * 9 7 2 20 20 C 1.53006 * 117.49150 * 1.84876 * 19 9 7 21 21 C 1.53000 * 117.50123 * 293.19214 * 19 9 7 22 22 H 0.97001 * 120.00019 * 5.01991 * 1 2 3 23 23 H 1.08004 * 118.54835 * 180.26385 * 12 11 10 24 24 H 1.08007 * 127.36384 * 180.02562 * 17 16 15 25 25 H 1.08996 * 115.55101 * 147.51260 * 19 9 7 26 26 H 1.08997 * 117.50409 * 359.97438 * 20 19 9 27 27 H 1.08997 * 117.49527 * 145.02312 * 20 19 9 28 28 H 1.09002 * 117.49998 * 214.97737 * 21 19 9 29 29 H 1.09005 * 117.49697 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0095 -1.2027 0.0005 8 1 3.0761 -1.2106 -0.1691 9 7 1.3420 -2.3783 0.2159 10 6 1.4339 -3.4028 -0.7046 11 7 0.8751 -4.5903 -0.4676 12 6 0.9632 -5.5686 -1.3482 13 7 1.5954 -5.4425 -2.4983 14 6 2.1823 -4.3000 -2.8255 15 8 2.8845 -3.8330 -3.8677 16 7 3.2341 -2.6836 -3.7245 17 6 2.8495 -2.1633 -2.5945 18 6 2.1145 -3.2255 -1.9123 19 6 0.5301 -2.5492 1.4234 20 6 0.4336 -1.3618 2.3835 21 6 1.2617 -2.5910 2.7665 22 1 -0.4850 0.8368 -0.0735 23 1 0.4927 -6.5133 -1.1189 24 1 3.0354 -1.1611 -2.2373 25 1 -0.3525 -3.1788 1.3112 26 1 0.9744 -0.4538 2.1170 27 1 -0.5124 -1.2106 2.9033 28 1 0.8601 -3.2479 3.5381 29 1 2.3471 -2.4917 2.7517 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260511645.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:54 Heat of formation + Delta-G solvation = 148.492783 kcal Electronic energy + Delta-G solvation = -17818.858406 eV Core-core repulsion = 14940.244229 eV Total energy + Delta-G solvation = -2878.614176 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.78355 -39.48131 -37.64044 -34.13823 -32.91283 -32.39841 -31.48428 -29.46607 -25.87547 -24.35609 -23.19025 -21.76060 -21.37954 -20.42036 -18.71379 -17.11541 -17.01451 -16.91929 -16.46459 -15.32927 -14.42970 -14.35484 -13.75333 -13.54081 -13.37654 -13.03704 -12.24781 -12.22604 -11.58137 -11.45737 -11.14893 -10.68029 -10.61506 -10.54778 -10.01020 -9.94110 -9.55265 -9.21277 -9.08795 -8.76765 -8.40400 -7.09353 -6.70131 -4.62194 1.58278 2.05997 2.88015 2.98050 3.01054 3.01593 3.17674 3.65761 4.17769 4.43949 4.56618 4.85961 4.94960 5.18442 5.33752 5.55011 5.74627 5.76567 5.87253 5.99653 6.10488 6.30103 6.54785 6.69047 6.76241 6.96020 7.05246 7.10838 7.66703 7.80679 8.24938 8.68255 8.79160 9.05447 9.34553 10.23375 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.022070 B = 0.010970 C = 0.007852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.358833 B = 2551.761843 C = 3565.091806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.062 3.938 3 Si 0.912 3.088 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.349 5.349 10 C 0.467 3.533 11 N -0.608 5.608 12 C 0.373 3.627 13 N -0.587 5.587 14 C 0.266 3.734 15 O 0.058 5.942 16 N -0.376 5.376 17 C 0.092 3.908 18 C -0.317 4.317 19 C 0.105 3.895 20 C -0.145 4.145 21 C -0.208 4.208 22 H 0.277 0.723 23 H 0.194 0.806 24 H 0.202 0.798 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.935 -1.487 2.816 3.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.150 4.150 3 Si 0.736 3.264 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.478 4.478 8 H 0.111 0.889 9 N -0.036 5.036 10 C 0.217 3.783 11 N -0.340 5.340 12 C 0.081 3.919 13 N -0.324 5.324 14 C 0.079 3.921 15 O 0.012 5.988 16 N -0.092 5.092 17 C -0.095 4.095 18 C -0.333 4.333 19 C 0.000 4.000 20 C -0.182 4.182 21 C -0.247 4.247 22 H 0.088 0.912 23 H 0.210 0.790 24 H 0.219 0.781 25 H 0.130 0.870 26 H 0.127 0.873 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.045 -1.494 2.145 2.815 hybrid contribution 0.213 1.564 0.516 1.661 sum 1.259 0.071 2.661 2.945 Atomic orbital electron populations 1.69994 1.06179 1.28833 1.41008 1.25676 0.95478 1.00067 0.93810 0.86082 0.80337 0.81087 0.78867 1.18467 1.19786 1.19701 1.19413 0.92472 0.81714 1.54204 0.88868 1.41738 1.39262 1.09604 1.12947 1.18280 0.87645 0.88259 0.84149 1.68221 1.29731 1.00768 1.35324 1.24457 0.88495 0.96357 0.82615 1.67229 1.20172 1.22672 1.22329 1.21625 0.91932 0.91360 0.87198 1.84696 1.56110 1.21380 1.36612 1.73608 1.21812 0.92640 1.21137 1.25780 0.94360 1.00560 0.88824 1.20723 1.15060 0.97306 1.00180 1.21414 0.95617 1.01719 0.81201 1.23061 1.00297 0.93947 1.00922 1.23376 0.99329 1.02765 0.99246 0.91223 0.78959 0.78093 0.86976 0.87318 0.90142 0.89780 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -19.55 11.65 55.49 0.65 -18.91 15 2 C 0.06 1.37 3.30 -17.45 -0.06 1.31 15 3 Si 0.91 17.25 29.57 -169.99 -5.03 12.22 15 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 15 5 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 6 H -0.27 -5.13 7.11 56.52 0.40 -4.72 15 7 C -0.35 -7.93 6.22 -15.05 -0.09 -8.02 15 8 H 0.09 2.09 6.97 -52.49 -0.37 1.73 15 9 N -0.35 -8.01 2.78 -107.79 -0.30 -8.30 15 10 C 0.47 10.78 7.36 -154.89 -1.14 9.64 15 11 N -0.61 -12.93 9.58 -13.77 -0.13 -13.07 15 12 C 0.37 7.04 12.22 -92.00 -1.12 5.91 15 13 N -0.59 -12.19 10.46 -14.52 -0.15 -12.35 15 14 C 0.27 5.90 8.82 -16.13 -0.14 5.76 15 15 O 0.06 1.26 11.11 17.08 0.19 1.45 15 16 N -0.38 -7.98 11.96 31.87 0.38 -7.59 15 17 C 0.09 1.95 11.10 -15.10 -0.17 1.78 15 18 C -0.32 -7.24 6.05 -105.07 -0.64 -7.88 15 19 C 0.11 2.21 5.60 -67.93 -0.38 1.83 15 20 C -0.14 -2.81 8.42 -26.69 -0.22 -3.03 15 21 C -0.21 -3.76 10.38 -26.69 -0.28 -4.04 15 22 H 0.28 6.18 8.32 -40.82 -0.34 5.85 15 23 H 0.19 2.68 8.06 -52.48 -0.42 2.25 15 24 H 0.20 3.97 6.59 -52.48 -0.35 3.62 15 25 H 0.11 2.38 7.89 -51.93 -0.41 1.97 15 26 H 0.11 2.30 5.40 -51.93 -0.28 2.02 15 27 H 0.08 1.44 8.14 -51.93 -0.42 1.01 15 28 H 0.08 1.32 8.14 -51.93 -0.42 0.89 15 29 H 0.09 1.63 8.14 -51.93 -0.42 1.21 15 LS Contribution 255.54 15.07 3.85 3.85 Total: -1.00 -25.87 255.54 -7.01 -32.88 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -2.23 Total: 6.55 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -4.24 Total: 3.27 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.44 Total: -60.22 kcal Atomic # 8 Polarization: 1.26 SS G_CDS: 0.19 Total: 1.45 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -25.87 -7.01 -32.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260511645.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.373 kcal (2) G-P(sol) polarization free energy of solvation -25.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds