Wall clock time and date at job start Mon Mar 30 2020 04:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99989 * 2 1 4 4 H 1.48499 * 109.47296 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47032 * 300.00226 * 3 2 1 6 6 H 1.48502 * 109.47101 * 59.99768 * 3 2 1 7 7 C 1.38877 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00241 * 169.54949 * 7 2 1 9 9 N 1.36899 * 119.99708 * 349.55838 * 7 2 1 10 10 C 1.38035 * 119.99837 * 124.59509 * 9 7 2 11 11 N 1.33358 * 120.96215 * 174.91780 * 10 9 7 12 12 C 1.31916 * 120.91354 * 179.97438 * 11 10 9 13 13 N 1.31847 * 122.91562 * 359.97438 * 12 11 10 14 14 C 1.32545 * 120.66923 * 359.97438 * 13 12 11 15 15 O 1.34068 * 136.39425 * 180.02562 * 14 13 12 16 16 N 1.20993 * 112.96783 * 179.97438 * 15 14 13 17 17 C 1.30213 * 113.39003 * 359.97438 * 16 15 14 18 18 C 1.39764 * 120.96441 * 354.87193 * 10 9 7 19 19 C 1.46497 * 120.00455 * 304.58875 * 9 7 2 20 20 C 1.53006 * 117.49150 * 1.84876 * 19 9 7 21 21 C 1.53000 * 117.50123 * 293.19214 * 19 9 7 22 22 H 0.97001 * 120.00019 * 5.01991 * 1 2 3 23 23 H 1.08004 * 118.54835 * 180.26385 * 12 11 10 24 24 H 1.08007 * 127.36384 * 180.02562 * 17 16 15 25 25 H 1.08996 * 115.55101 * 147.51260 * 19 9 7 26 26 H 1.08997 * 117.50409 * 359.97438 * 20 19 9 27 27 H 1.08997 * 117.49527 * 145.02312 * 20 19 9 28 28 H 1.09002 * 117.49998 * 214.97737 * 21 19 9 29 29 H 1.09005 * 117.49697 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0095 -1.2027 0.0005 8 1 3.0761 -1.2106 -0.1691 9 7 1.3420 -2.3783 0.2159 10 6 1.4339 -3.4028 -0.7046 11 7 0.8751 -4.5903 -0.4676 12 6 0.9632 -5.5686 -1.3482 13 7 1.5954 -5.4425 -2.4983 14 6 2.1823 -4.3000 -2.8255 15 8 2.8845 -3.8330 -3.8677 16 7 3.2341 -2.6836 -3.7245 17 6 2.8495 -2.1633 -2.5945 18 6 2.1145 -3.2255 -1.9123 19 6 0.5301 -2.5492 1.4234 20 6 0.4336 -1.3618 2.3835 21 6 1.2617 -2.5910 2.7665 22 1 -0.4850 0.8368 -0.0735 23 1 0.4927 -6.5133 -1.1189 24 1 3.0354 -1.1611 -2.2373 25 1 -0.3525 -3.1788 1.3112 26 1 0.9744 -0.4538 2.1170 27 1 -0.5124 -1.2106 2.9033 28 1 0.8601 -3.2479 3.5381 29 1 2.3471 -2.4917 2.7517 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260511645.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:53 Heat of formation + Delta-G solvation = 134.300823 kcal Electronic energy + Delta-G solvation = -17819.473815 eV Core-core repulsion = 14940.244229 eV Total energy + Delta-G solvation = -2879.229586 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.45756 -41.11091 -39.24645 -35.74061 -34.60013 -34.06576 -33.14678 -31.12567 -27.57710 -26.02684 -24.80307 -23.36753 -22.91994 -22.06900 -20.37070 -18.75577 -18.68391 -18.60423 -18.14214 -16.97602 -15.97381 -15.92182 -15.39174 -15.08919 -14.99529 -14.67592 -13.90387 -13.82948 -13.20069 -13.00302 -12.78855 -12.25309 -12.15637 -12.09701 -11.63939 -11.57373 -11.12114 -10.88290 -10.72912 -10.41513 -10.04771 -8.78686 -8.38343 -6.36715 -0.04469 0.36015 1.30308 1.41110 1.43793 1.52408 1.54059 2.08211 2.55061 2.77002 2.96409 3.23057 3.37371 3.58725 3.76312 3.90160 4.14687 4.22235 4.32313 4.43584 4.50159 4.88453 4.99647 5.04332 5.22749 5.29769 5.47485 5.54092 6.02800 6.08520 6.57130 6.98717 7.13336 7.36971 7.67569 8.54534 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.022070 B = 0.010970 C = 0.007852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.358833 B = 2551.761843 C = 3565.091806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.036 3.964 3 Si 0.968 3.032 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.359 4.359 8 H 0.091 0.909 9 N -0.358 5.358 10 C 0.447 3.553 11 N -0.616 5.616 12 C 0.377 3.623 13 N -0.591 5.591 14 C 0.258 3.742 15 O 0.055 5.945 16 N -0.377 5.377 17 C 0.093 3.907 18 C -0.343 4.343 19 C 0.079 3.921 20 C -0.142 4.142 21 C -0.181 4.181 22 H 0.279 0.721 23 H 0.243 0.757 24 H 0.213 0.787 25 H 0.105 0.895 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.055 -1.684 3.608 4.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.173 4.173 3 Si 0.791 3.209 4 H -0.178 1.178 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.487 4.487 8 H 0.109 0.891 9 N -0.044 5.044 10 C 0.197 3.803 11 N -0.348 5.348 12 C 0.086 3.914 13 N -0.329 5.329 14 C 0.070 3.930 15 O 0.009 5.991 16 N -0.093 5.093 17 C -0.094 4.094 18 C -0.359 4.359 19 C -0.025 4.025 20 C -0.180 4.180 21 C -0.220 4.220 22 H 0.089 0.911 23 H 0.259 0.741 24 H 0.229 0.771 25 H 0.123 0.877 26 H 0.109 0.891 27 H 0.113 0.887 28 H 0.132 0.868 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.169 -1.712 2.945 3.601 hybrid contribution 0.137 1.548 0.279 1.579 sum 1.306 -0.163 3.224 3.482 Atomic orbital electron populations 1.70070 1.07424 1.29522 1.42051 1.26246 0.95875 1.02245 0.92940 0.85236 0.79540 0.77615 0.78546 1.17802 1.20161 1.19386 1.19542 0.92484 0.82141 1.54564 0.89149 1.41950 1.39327 1.09640 1.13521 1.18606 0.88151 0.89098 0.84488 1.68298 1.29882 1.00644 1.35991 1.25479 0.87123 0.97369 0.81381 1.67369 1.20435 1.22010 1.23109 1.21895 0.92058 0.91843 0.87173 1.84673 1.56235 1.21535 1.36630 1.73585 1.21985 0.92604 1.21135 1.25946 0.93964 1.00820 0.88635 1.20959 1.16112 0.98099 1.00691 1.21525 0.96204 1.03070 0.81717 1.23001 1.01078 0.93298 1.00582 1.23387 0.98809 1.01909 0.97853 0.91147 0.74085 0.77056 0.87682 0.89070 0.88744 0.86810 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -40.36 11.65 21.66 0.25 -40.10 15 2 C 0.04 1.60 3.30 84.89 0.28 1.88 15 3 Si 0.97 34.77 29.57 68.60 2.03 36.80 15 4 H -0.25 -8.80 7.11 99.48 0.71 -8.09 15 5 H -0.28 -10.04 7.11 99.48 0.71 -9.33 15 6 H -0.27 -9.48 7.11 99.48 0.71 -8.77 15 7 C -0.36 -16.19 6.22 84.06 0.52 -15.66 15 8 H 0.09 4.05 6.97 -2.91 -0.02 4.03 15 9 N -0.36 -16.31 2.78 -494.95 -1.37 -17.68 15 10 C 0.45 20.51 7.36 133.26 0.98 21.49 15 11 N -0.62 -25.49 9.58 -197.49 -1.89 -27.38 15 12 C 0.38 13.49 12.22 180.83 2.21 15.70 15 13 N -0.59 -23.79 10.46 -313.44 -3.28 -27.07 15 14 C 0.26 11.31 8.82 85.31 0.75 12.06 15 15 O 0.05 2.34 11.11 71.28 0.79 3.13 15 16 N -0.38 -15.83 11.96 -53.18 -0.64 -16.47 15 17 C 0.09 3.96 11.10 86.97 0.97 4.92 15 18 C -0.34 -15.61 6.05 -20.16 -0.12 -15.73 15 19 C 0.08 3.27 5.60 44.99 0.25 3.52 15 20 C -0.14 -5.35 8.42 30.62 0.26 -5.09 15 21 C -0.18 -6.19 10.38 30.62 0.32 -5.87 15 22 H 0.28 12.39 8.32 -92.71 -0.77 11.62 15 23 H 0.24 5.87 8.06 -2.91 -0.02 5.84 15 24 H 0.21 8.30 6.59 -2.91 -0.02 8.28 15 25 H 0.11 4.40 7.89 -2.39 -0.02 4.38 15 26 H 0.09 3.79 5.40 -2.39 -0.01 3.77 15 27 H 0.09 3.23 8.14 -2.39 -0.02 3.21 15 28 H 0.11 3.20 8.14 -2.39 -0.02 3.18 15 29 H 0.08 2.91 8.14 -2.38 -0.02 2.89 15 Total: -1.00 -54.05 255.54 3.51 -50.54 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 1.20 Total: 21.02 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 6.42 Total: 17.21 kcal Atomic # 7 Polarization: -121.77 SS G_CDS: -6.93 Total: -128.70 kcal Atomic # 8 Polarization: 2.34 SS G_CDS: 0.79 Total: 3.13 kcal Atomic # 14 Polarization: 34.77 SS G_CDS: 2.03 Total: 36.80 kcal Total: -54.05 3.51 -50.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260511645.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.842 kcal (2) G-P(sol) polarization free energy of solvation -54.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds