Wall clock time and date at job start Mon Mar 30 2020 03:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30720 * 1 3 3 Si 1.86801 * 119.99996 * 2 1 4 4 H 1.48506 * 109.46991 * 240.00499 * 3 2 1 5 5 H 1.48496 * 109.47150 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46977 * 120.00209 * 3 2 1 7 7 C 1.40232 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99981 * 161.58826 * 7 2 1 9 9 C 1.40161 * 120.00155 * 341.59427 * 7 2 1 10 10 C 1.41529 * 121.49320 * 313.84954 * 9 7 2 11 11 N 1.38598 * 120.50152 * 0.07639 * 10 9 7 12 12 C 1.40202 * 118.99892 * 180.02562 * 10 9 7 13 13 O 1.35702 * 118.80057 * 180.31065 * 12 10 9 14 14 N 1.31245 * 122.39350 * 0.02672 * 12 10 9 15 15 C 1.33967 * 122.88705 * 0.02562 * 14 12 10 16 16 C 1.40501 * 120.74996 * 179.97438 * 15 14 12 17 17 C 1.36255 * 119.99378 * 180.02562 * 16 15 14 18 18 C 1.39491 * 120.93913 * 359.96900 * 17 16 15 19 19 O 1.35872 * 119.79153 * 180.02562 * 18 17 16 20 20 C 1.38315 * 120.41488 * 0.02562 * 18 17 16 21 21 C 1.39311 * 119.47620 * 0.04259 * 20 18 17 22 22 H 0.96996 * 119.99572 * 355.05848 * 1 2 3 23 23 H 0.96996 * 119.99888 * 170.89560 * 11 10 9 24 24 H 0.97001 * 119.99750 * 350.89295 * 11 10 9 25 25 H 0.96700 * 114.00269 * 269.72830 * 13 12 10 26 26 H 1.07996 * 119.99869 * 0.03947 * 16 15 14 27 27 H 1.07998 * 119.52841 * 179.97438 * 17 16 15 28 28 H 0.96701 * 114.00367 * 90.00530 * 19 18 17 29 29 H 1.07997 * 120.26170 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 3.0949 1.6964 -1.2126 5 1 1.2762 2.7464 0.0006 6 1 3.0950 1.6964 1.2125 7 6 2.0083 -1.2145 -0.0005 8 1 3.0469 -1.2383 -0.2960 9 6 1.3613 -2.3974 0.3822 10 6 0.5524 -2.4557 1.5421 11 7 0.3775 -1.3325 2.3350 12 6 -0.0701 -3.6667 1.8764 13 8 -0.8499 -3.7164 2.9859 14 7 0.0695 -4.7524 1.1524 15 6 0.8148 -4.7941 0.0400 16 6 0.9334 -5.9818 -0.7012 17 6 1.6959 -6.0070 -1.8301 18 6 2.3666 -4.8650 -2.2681 19 8 3.1203 -4.9162 -3.3975 20 6 2.2691 -3.6808 -1.5600 21 6 1.4953 -3.6360 -0.4025 22 1 -0.4849 0.8369 0.0724 23 1 -0.2783 -1.3406 3.0496 24 1 0.9110 -0.5383 2.1752 25 1 -0.3736 -3.9627 3.7907 26 1 0.4201 -6.8746 -0.3761 27 1 1.7822 -6.9241 -2.3938 28 1 2.6338 -4.7015 -4.2052 29 1 2.7891 -2.7980 -1.9016 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260515838.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:54 Heat of formation + Delta-G solvation = -38.910280 kcal Electronic energy + Delta-G solvation = -17413.180800 eV Core-core repulsion = 14494.147467 eV Total energy + Delta-G solvation = -2919.033334 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.50305 -37.95881 -36.28022 -35.32542 -33.44528 -32.40885 -31.29389 -28.21933 -27.36751 -25.63435 -22.49646 -21.78096 -20.79790 -18.74909 -17.58642 -17.35039 -16.66817 -15.89336 -15.31724 -14.94173 -14.56868 -14.35855 -13.96849 -13.22167 -12.91128 -12.64859 -12.46468 -11.94682 -11.81377 -11.42319 -11.20873 -11.00244 -10.70690 -10.45801 -10.41177 -9.78221 -9.63371 -9.37650 -8.44307 -8.18931 -7.17864 -7.00573 -6.29978 -4.54181 1.50134 2.09602 2.81057 2.92474 2.94475 3.20720 3.72168 3.83073 4.47418 4.70003 4.91634 5.21070 5.42452 5.72032 5.80254 6.10511 6.18067 6.36298 6.57930 6.78013 6.83502 6.88973 7.04228 7.21516 7.33757 7.47493 7.67691 8.00198 8.23849 8.36621 8.39661 8.48107 8.93023 9.04566 9.34301 9.90656 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.018750 B = 0.010591 C = 0.007035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.954954 B = 2643.104030 C = 3979.365408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.070 3.930 3 Si 0.903 3.097 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.447 4.447 8 H 0.088 0.912 9 C 0.104 3.896 10 C 0.077 3.923 11 N -0.851 5.851 12 C 0.282 3.718 13 O -0.492 6.492 14 N -0.563 5.563 15 C 0.142 3.858 16 C -0.108 4.108 17 C -0.133 4.133 18 C 0.030 3.970 19 O -0.503 6.503 20 C -0.076 4.076 21 C -0.121 4.121 22 H 0.286 0.714 23 H 0.380 0.620 24 H 0.392 0.608 25 H 0.375 0.625 26 H 0.118 0.882 27 H 0.114 0.886 28 H 0.372 0.628 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.141 -0.689 0.241 2.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.151 4.151 3 Si 0.726 3.274 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.478 4.478 8 H 0.106 0.894 9 C 0.091 3.909 10 C -0.032 4.032 11 N -0.392 5.392 12 C 0.095 3.905 13 O -0.297 6.297 14 N -0.286 5.286 15 C 0.017 3.983 16 C -0.127 4.127 17 C -0.154 4.154 18 C -0.015 4.015 19 O -0.311 6.311 20 C -0.096 4.096 21 C -0.126 4.126 22 H 0.097 0.903 23 H 0.206 0.794 24 H 0.221 0.779 25 H 0.229 0.771 26 H 0.136 0.864 27 H 0.132 0.868 28 H 0.225 0.775 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.478 -1.336 0.440 2.041 hybrid contribution 0.468 1.861 -0.065 1.920 sum 1.946 0.524 0.375 2.050 Atomic orbital electron populations 1.69804 1.07474 1.30399 1.31136 1.25893 0.94695 1.01000 0.93506 0.86422 0.80319 0.80152 0.80480 1.18602 1.20152 1.18604 1.19064 0.98327 0.90735 1.39678 0.89392 1.18184 0.93066 0.91420 0.88186 1.18764 1.03143 0.87734 0.93538 1.41523 1.45678 1.14673 1.37371 1.18532 0.94104 0.88337 0.89492 1.84789 1.37093 1.91049 1.16728 1.66670 1.22998 1.29410 1.09561 1.18079 0.95075 0.92785 0.92390 1.20342 1.00499 0.96865 0.95039 1.20688 0.98735 0.97788 0.98148 1.18221 0.99374 0.93274 0.90613 1.84830 1.38325 1.92325 1.15622 1.21200 0.96775 0.96489 0.95113 1.19705 1.01605 0.94899 0.96388 0.90260 0.79354 0.77861 0.77110 0.86361 0.86816 0.77472 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.05 11.74 55.56 0.65 -17.40 15 2 C 0.07 1.56 3.54 -17.28 -0.06 1.50 15 3 Si 0.90 16.67 29.60 -169.99 -5.03 11.64 15 4 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 5 H -0.28 -5.05 7.11 56.52 0.40 -4.65 15 6 H -0.26 -4.74 7.11 56.52 0.40 -4.34 15 7 C -0.45 -10.64 7.68 -38.11 -0.29 -10.93 15 8 H 0.09 2.03 7.65 -52.48 -0.40 1.62 15 9 C 0.10 2.59 5.41 -104.27 -0.56 2.02 15 10 C 0.08 1.83 6.36 -82.81 -0.53 1.30 15 11 N -0.85 -17.70 7.87 32.97 0.26 -17.44 15 12 C 0.28 6.65 7.71 -17.07 -0.13 6.52 15 13 O -0.49 -9.92 12.76 -18.81 -0.24 -10.16 15 14 N -0.56 -13.81 10.25 -11.06 -0.11 -13.92 15 15 C 0.14 3.41 6.61 -84.87 -0.56 2.85 15 16 C -0.11 -2.23 9.96 -39.44 -0.39 -2.63 15 17 C -0.13 -2.52 9.88 -39.83 -0.39 -2.91 15 18 C 0.03 0.59 6.70 -39.09 -0.26 0.33 15 19 O -0.50 -8.64 13.49 -19.34 -0.26 -8.90 15 20 C -0.08 -1.68 9.43 -39.15 -0.37 -2.05 15 21 C -0.12 -2.94 5.90 -104.63 -0.62 -3.55 15 22 H 0.29 6.22 8.30 -40.82 -0.34 5.88 15 23 H 0.38 7.05 8.18 -40.82 -0.33 6.72 15 24 H 0.39 8.12 6.27 -40.82 -0.26 7.86 15 25 H 0.37 5.62 9.06 45.56 0.41 6.04 15 26 H 0.12 2.21 8.06 -52.49 -0.42 1.79 15 27 H 0.11 1.81 8.06 -52.49 -0.42 1.39 15 28 H 0.37 4.58 9.06 45.56 0.41 4.99 15 29 H 0.13 2.68 7.18 -52.49 -0.38 2.30 15 LS Contribution 258.05 15.07 3.89 3.89 Total: -1.00 -29.19 258.05 -5.54 -34.73 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -0.52 Total: 25.12 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -4.17 Total: -7.55 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 0.80 Total: -48.76 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.50 Total: -19.06 kcal Atomic # 14 Polarization: 16.67 SS G_CDS: -5.03 Total: 11.64 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.19 -5.54 -34.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260515838.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.183 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds