Wall clock time and date at job start Mon Mar 30 2020 03:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00120 * 2 1 4 4 H 1.48505 * 109.47251 * 270.00250 * 3 2 1 5 5 H 1.48498 * 109.47059 * 30.00347 * 3 2 1 6 6 H 1.48501 * 109.46940 * 150.00093 * 3 2 1 7 7 C 1.37878 * 119.99525 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00507 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99433 * 179.97438 * 7 2 1 10 10 C 1.50705 * 109.46531 * 180.02562 * 9 7 2 11 11 C 1.38052 * 120.05778 * 265.27487 * 10 9 7 12 12 C 1.38291 * 120.11811 * 180.32272 * 11 10 9 13 13 C 1.38343 * 120.23969 * 359.67813 * 12 11 10 14 14 C 1.37997 * 120.12381 * 0.02562 * 13 12 11 15 15 C 1.39295 * 120.06355 * 85.00396 * 10 9 7 16 16 C 1.48430 * 120.12021 * 359.96957 * 15 10 9 17 17 N 1.30789 * 126.35604 * 359.70510 * 16 15 10 18 18 O 1.21269 * 110.28269 * 180.02562 * 17 16 15 19 19 C 1.33944 * 109.99110 * 0.02562 * 18 17 16 20 20 O 1.35077 * 126.53133 * 179.73408 * 19 18 17 21 21 N 1.31751 * 106.94766 * 359.97438 * 19 18 17 22 22 H 0.97004 * 119.99651 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.46984 * 60.00237 * 9 7 2 24 24 H 1.08999 * 109.47108 * 299.99678 * 9 7 2 25 25 H 1.08002 * 119.94052 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.88231 * 179.69839 * 12 11 10 27 27 H 1.08008 * 119.94133 * 180.02562 * 13 12 11 28 28 H 1.07994 * 120.06239 * 179.97438 * 14 13 12 29 29 H 0.96700 * 113.99504 * 0.02922 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0138 -2.6150 -0.0023 11 6 4.3375 -3.2349 1.1880 12 6 4.8048 -4.5365 1.1878 13 6 4.9442 -5.2266 -0.0031 14 6 4.6178 -4.6186 -1.1981 15 6 4.1469 -3.3071 -1.2038 16 6 3.7940 -2.6480 -2.4860 17 7 3.3430 -1.4291 -2.6329 18 8 3.1506 -1.1907 -3.8063 19 6 3.4663 -2.2599 -4.5487 20 8 3.3747 -2.3611 -5.8925 21 7 3.8782 -3.1960 -3.7181 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6805 0.8888 24 1 3.8745 -0.6801 -0.8911 25 1 4.2301 -2.7009 2.1206 26 1 5.0615 -5.0161 2.1208 27 1 5.3092 -6.2431 0.0025 28 1 4.7274 -5.1581 -2.1272 29 1 3.0450 -1.5618 -6.3255 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260531210.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:51 Heat of formation + Delta-G solvation = 63.227810 kcal Electronic energy + Delta-G solvation = -17342.816458 eV Core-core repulsion = 14428.212164 eV Total energy + Delta-G solvation = -2914.604294 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.99101 -38.90269 -38.25406 -35.32099 -33.59582 -31.84543 -31.07737 -29.99214 -27.67237 -24.41811 -23.63869 -22.53831 -21.70054 -20.41965 -18.84583 -17.90768 -16.74281 -16.39191 -16.04940 -15.56984 -14.84126 -14.27564 -14.10481 -13.91800 -13.21257 -12.95887 -12.61974 -12.31409 -12.05985 -11.37624 -11.30512 -11.16327 -10.91018 -10.67237 -10.15544 -10.05505 -9.94981 -9.42389 -9.32874 -8.50293 -8.23073 -7.90900 -6.02123 -3.98809 1.28572 1.85956 1.94748 2.37749 2.99345 3.33845 3.39531 3.42593 3.53963 4.30959 4.38074 4.47684 5.13953 5.30195 5.40047 5.47889 5.54781 5.82194 5.95311 6.10050 6.17226 6.39771 6.55087 6.81560 6.86655 6.88745 6.96433 7.14236 7.43323 7.47548 7.74397 8.51900 8.71655 9.00756 9.59392 11.11102 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.014961 B = 0.011942 C = 0.007265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.144420 B = 2344.058894 C = 3853.367206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.076 3.924 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.494 4.494 8 H 0.069 0.931 9 C 0.003 3.997 10 C 0.004 3.996 11 C -0.128 4.128 12 C -0.101 4.101 13 C -0.151 4.151 14 C -0.076 4.076 15 C -0.033 4.033 16 C 0.235 3.765 17 N -0.308 5.308 18 O 0.040 5.960 19 C 0.343 3.657 20 O -0.399 6.399 21 N -0.475 5.475 22 H 0.262 0.738 23 H 0.027 0.973 24 H 0.048 0.952 25 H 0.126 0.874 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.127 0.873 29 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.322 -4.823 -6.325 12.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.125 4.125 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.532 4.532 8 H 0.087 0.913 9 C -0.034 4.034 10 C 0.002 3.998 11 C -0.146 4.146 12 C -0.120 4.120 13 C -0.169 4.169 14 C -0.096 4.096 15 C -0.035 4.035 16 C -0.035 4.035 17 N -0.023 5.023 18 O -0.019 6.019 19 C 0.085 3.915 20 O -0.197 6.197 21 N -0.226 5.226 22 H 0.072 0.928 23 H 0.045 0.955 24 H 0.066 0.934 25 H 0.144 0.856 26 H 0.137 0.863 27 H 0.138 0.862 28 H 0.145 0.855 29 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 9.349 -5.067 -5.728 12.079 hybrid contribution -0.121 1.415 -0.628 1.553 sum 9.228 -3.652 -6.356 11.785 Atomic orbital electron populations 1.69903 1.06231 1.26760 1.51294 1.24862 0.94558 0.98725 0.94397 0.86852 0.80328 0.83899 0.78722 1.19952 1.21533 1.19113 1.20668 0.87568 0.94386 1.50530 0.91314 1.19129 0.98062 0.88063 0.98183 1.20395 0.90551 0.98027 0.90835 1.20999 1.00724 0.95039 0.97795 1.21217 0.98344 0.94680 0.97772 1.20866 1.03891 0.99900 0.92257 1.21055 0.96885 0.93153 0.98540 1.17215 1.05093 0.94027 0.87159 1.23501 0.99450 0.88228 0.92287 1.75527 1.18345 1.17126 0.91261 1.85626 1.64191 1.38254 1.13838 1.25848 0.94287 0.84677 0.86715 1.85012 1.83482 1.42664 1.08566 1.72182 1.26019 1.25477 0.98874 0.92774 0.95453 0.93406 0.85582 0.86338 0.86189 0.85490 0.71880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.93 13.96 55.43 0.77 -27.16 15 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 15 3 Si 0.87 21.98 27.47 -169.99 -4.67 17.31 15 4 H -0.27 -6.79 7.11 56.52 0.40 -6.39 15 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 15 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 15 7 C -0.49 -14.11 8.91 -34.44 -0.31 -14.41 15 8 H 0.07 2.18 7.98 -52.49 -0.42 1.76 15 9 C 0.00 0.07 3.45 -29.03 -0.10 -0.03 15 10 C 0.00 0.09 5.10 -104.30 -0.53 -0.44 15 11 C -0.13 -2.35 9.67 -39.63 -0.38 -2.74 15 12 C -0.10 -1.56 10.04 -39.52 -0.40 -1.95 15 13 C -0.15 -2.27 10.03 -39.63 -0.40 -2.67 15 14 C -0.08 -1.32 9.70 -39.26 -0.38 -1.70 15 15 C -0.03 -0.68 5.88 -104.89 -0.62 -1.30 15 16 C 0.23 4.97 7.66 -156.19 -1.20 3.77 15 17 N -0.31 -6.85 8.21 31.12 0.26 -6.60 15 18 O 0.04 0.75 11.31 -5.83 -0.07 0.68 15 19 C 0.34 5.51 9.80 52.45 0.51 6.02 15 20 O -0.40 -4.34 13.62 -40.10 -0.55 -4.89 15 21 N -0.48 -9.03 11.29 -13.80 -0.16 -9.18 15 22 H 0.26 7.62 8.31 -40.82 -0.34 7.28 15 23 H 0.03 0.66 7.11 -51.93 -0.37 0.29 15 24 H 0.05 1.20 4.99 -51.93 -0.26 0.94 15 25 H 0.13 2.17 8.06 -52.49 -0.42 1.75 15 26 H 0.12 1.43 8.06 -52.49 -0.42 1.01 15 27 H 0.12 1.41 8.06 -52.48 -0.42 0.98 15 28 H 0.13 2.02 7.87 -52.49 -0.41 1.60 15 29 H 0.42 1.76 9.06 45.56 0.41 2.17 15 LS Contribution 261.82 15.07 3.95 3.95 Total: -1.00 -34.83 261.82 -5.84 -40.67 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: -1.48 Total: -1.43 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -3.89 Total: -13.35 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.87 Total: -42.94 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.61 Total: -4.20 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -34.83 -5.84 -40.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260531210.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.896 kcal (2) G-P(sol) polarization free energy of solvation -34.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds