Wall clock time and date at job start Mon Mar 30 2020 03:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00120 * 2 1 4 4 H 1.48505 * 109.47251 * 270.00250 * 3 2 1 5 5 H 1.48498 * 109.47059 * 30.00347 * 3 2 1 6 6 H 1.48501 * 109.46940 * 150.00093 * 3 2 1 7 7 C 1.37878 * 119.99525 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00507 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99433 * 179.97438 * 7 2 1 10 10 C 1.50705 * 109.46531 * 180.02562 * 9 7 2 11 11 C 1.38052 * 120.05778 * 265.27487 * 10 9 7 12 12 C 1.38291 * 120.11811 * 180.32272 * 11 10 9 13 13 C 1.38343 * 120.23969 * 359.67813 * 12 11 10 14 14 C 1.37997 * 120.12381 * 0.02562 * 13 12 11 15 15 C 1.39295 * 120.06355 * 85.00396 * 10 9 7 16 16 C 1.48430 * 120.12021 * 359.96957 * 15 10 9 17 17 N 1.30789 * 126.35604 * 359.70510 * 16 15 10 18 18 O 1.21269 * 110.28269 * 180.02562 * 17 16 15 19 19 C 1.33944 * 109.99110 * 0.02562 * 18 17 16 20 20 O 1.35077 * 126.53133 * 179.73408 * 19 18 17 21 21 N 1.31751 * 106.94766 * 359.97438 * 19 18 17 22 22 H 0.97004 * 119.99651 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.46984 * 60.00237 * 9 7 2 24 24 H 1.08999 * 109.47108 * 299.99678 * 9 7 2 25 25 H 1.08002 * 119.94052 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.88231 * 179.69839 * 12 11 10 27 27 H 1.08008 * 119.94133 * 180.02562 * 13 12 11 28 28 H 1.07994 * 120.06239 * 179.97438 * 14 13 12 29 29 H 0.96700 * 113.99504 * 0.02922 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0138 -2.6150 -0.0023 11 6 4.3375 -3.2349 1.1880 12 6 4.8048 -4.5365 1.1878 13 6 4.9442 -5.2266 -0.0031 14 6 4.6178 -4.6186 -1.1981 15 6 4.1469 -3.3071 -1.2038 16 6 3.7940 -2.6480 -2.4860 17 7 3.3430 -1.4291 -2.6329 18 8 3.1506 -1.1907 -3.8063 19 6 3.4663 -2.2599 -4.5487 20 8 3.3747 -2.3611 -5.8925 21 7 3.8782 -3.1960 -3.7181 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6805 0.8888 24 1 3.8745 -0.6801 -0.8911 25 1 4.2301 -2.7009 2.1206 26 1 5.0615 -5.0161 2.1208 27 1 5.3092 -6.2431 0.0025 28 1 4.7274 -5.1581 -2.1272 29 1 3.0450 -1.5618 -6.3255 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260531210.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:51 Heat of formation + Delta-G solvation = 35.787487 kcal Electronic energy + Delta-G solvation = -17344.006360 eV Core-core repulsion = 14428.212164 eV Total energy + Delta-G solvation = -2915.794196 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.46366 -40.29265 -39.31138 -36.73826 -35.48464 -33.63956 -32.58677 -31.41707 -29.46241 -25.90514 -25.22971 -24.15145 -23.06119 -21.91768 -20.13532 -19.38777 -18.92048 -17.84846 -17.41752 -16.64759 -16.45899 -15.94970 -15.65935 -15.05923 -14.83729 -14.49527 -14.27647 -13.92564 -13.78496 -13.02264 -12.91556 -12.62073 -12.44514 -12.25331 -11.96616 -11.79761 -11.62253 -11.49980 -10.80952 -10.66620 -9.62154 -9.37762 -8.26645 -6.27123 -0.12742 0.53877 0.57024 1.16339 1.33301 1.35545 1.45207 1.55693 2.28818 2.36743 2.94977 2.99775 3.10338 3.87622 4.08662 4.18876 4.27994 4.44326 4.58138 4.74727 4.82739 4.98706 5.10986 5.16586 5.30743 5.56285 5.60673 5.61891 5.85996 6.03959 6.10183 6.27259 6.73341 7.34258 7.34388 8.90550 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.014961 B = 0.011942 C = 0.007265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.144420 B = 2344.058894 C = 3853.367206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.019 3.981 3 Si 0.938 3.062 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.249 1.249 7 C -0.485 4.485 8 H 0.019 0.981 9 C 0.010 3.990 10 C -0.036 4.036 11 C -0.140 4.140 12 C -0.088 4.088 13 C -0.134 4.134 14 C -0.080 4.080 15 C -0.060 4.060 16 C 0.224 3.776 17 N -0.355 5.355 18 O 0.041 5.959 19 C 0.366 3.634 20 O -0.380 6.380 21 N -0.496 5.496 22 H 0.265 0.735 23 H 0.028 0.972 24 H 0.045 0.955 25 H 0.131 0.869 26 H 0.162 0.838 27 H 0.165 0.835 28 H 0.139 0.861 29 H 0.453 0.547 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.315 -5.852 -6.587 14.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.178 4.178 3 Si 0.762 3.238 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.173 1.173 7 C -0.523 4.523 8 H 0.038 0.962 9 C -0.027 4.027 10 C -0.038 4.038 11 C -0.158 4.158 12 C -0.107 4.107 13 C -0.151 4.151 14 C -0.100 4.100 15 C -0.062 4.062 16 C -0.045 4.045 17 N -0.071 5.071 18 O -0.018 6.018 19 C 0.108 3.892 20 O -0.183 6.183 21 N -0.247 5.247 22 H 0.074 0.926 23 H 0.046 0.954 24 H 0.063 0.937 25 H 0.149 0.851 26 H 0.179 0.821 27 H 0.183 0.817 28 H 0.157 0.843 29 H 0.317 0.683 Dipole moment (debyes) X Y Z Total from point charges 11.350 -6.087 -6.030 14.221 hybrid contribution -0.745 1.559 -0.688 1.860 sum 10.605 -4.527 -6.718 13.345 Atomic orbital electron populations 1.70051 1.08087 1.27815 1.53381 1.25705 0.95294 1.02572 0.94185 0.85843 0.79629 0.79198 0.79161 1.19356 1.20836 1.17307 1.20756 0.89897 0.92327 1.49349 0.96226 1.18908 0.95106 0.90850 0.97819 1.20289 0.93674 0.97058 0.92763 1.21205 1.01055 0.96683 0.96832 1.21660 0.96063 0.93117 0.99848 1.21404 1.01315 1.01457 0.90963 1.21313 0.96439 0.91917 1.00288 1.17518 1.06380 0.95536 0.86721 1.23817 0.99164 0.88225 0.93339 1.75464 1.20331 1.18355 0.92972 1.85536 1.64395 1.38701 1.13191 1.25923 0.91807 0.83324 0.88101 1.85058 1.82929 1.44758 1.05511 1.72118 1.27698 1.26257 0.98599 0.92648 0.95359 0.93742 0.85121 0.82070 0.81715 0.84274 0.68346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.06 13.96 21.45 0.30 -60.76 15 2 C 0.02 1.13 5.47 84.65 0.46 1.60 15 3 Si 0.94 46.04 27.47 68.60 1.88 47.93 15 4 H -0.27 -12.84 7.11 99.48 0.71 -12.13 15 5 H -0.28 -13.44 7.11 99.48 0.71 -12.74 15 6 H -0.25 -11.44 6.54 99.48 0.65 -10.79 15 7 C -0.49 -28.91 8.91 25.60 0.23 -28.68 15 8 H 0.02 1.31 7.98 -2.91 -0.02 1.29 15 9 C 0.01 0.52 3.45 29.10 0.10 0.62 15 10 C -0.04 -1.56 5.10 -19.65 -0.10 -1.66 15 11 C -0.14 -5.02 9.67 22.24 0.22 -4.80 15 12 C -0.09 -2.41 10.04 22.31 0.22 -2.19 15 13 C -0.13 -3.50 10.03 22.24 0.22 -3.28 15 14 C -0.08 -2.62 9.70 22.48 0.22 -2.40 15 15 C -0.06 -2.48 5.88 -20.04 -0.12 -2.59 15 16 C 0.22 9.63 7.66 137.33 1.05 10.68 15 17 N -0.35 -16.17 8.21 -58.54 -0.48 -16.65 15 18 O 0.04 1.52 11.31 94.24 1.07 2.59 15 19 C 0.37 11.43 9.80 130.35 1.28 12.70 15 20 O -0.38 -7.32 13.62 -61.37 -0.84 -8.15 15 21 N -0.50 -18.68 11.29 -427.46 -4.83 -23.50 15 22 H 0.26 15.85 8.31 -92.70 -0.77 15.08 15 23 H 0.03 1.38 7.11 -2.39 -0.02 1.36 15 24 H 0.04 2.28 4.99 -2.39 -0.01 2.27 15 25 H 0.13 4.41 8.06 -2.91 -0.02 4.39 15 26 H 0.16 3.02 8.06 -2.91 -0.02 3.00 15 27 H 0.17 2.88 8.06 -2.91 -0.02 2.85 15 28 H 0.14 4.15 7.87 -2.91 -0.02 4.13 15 29 H 0.45 2.38 9.06 -74.06 -0.67 1.71 15 Total: -1.00 -79.50 261.82 1.37 -78.13 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: 0.48 Total: 0.42 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 3.78 Total: -20.01 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -5.01 Total: -100.91 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: 0.23 Total: -5.56 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.88 Total: 47.93 kcal Total: -79.50 1.37 -78.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260531210.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.920 kcal (2) G-P(sol) polarization free energy of solvation -79.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds