Wall clock time and date at job start Mon Mar 30 2020 04:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35926 * 117.00128 * 2 1 4 4 C 1.39323 * 119.77229 * 359.72763 * 3 2 1 5 5 C 1.37625 * 120.76323 * 179.75569 * 4 3 2 6 6 C 1.39662 * 119.77788 * 0.51832 * 5 4 3 7 7 N 1.35676 * 121.53696 * 179.71644 * 6 5 4 8 8 C 1.29801 * 121.63834 * 180.02562 * 7 6 5 9 9 N 1.36275 * 123.30062 * 359.97438 * 8 7 6 10 10 C 1.37100 * 119.72121 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00554 * 150.58368 * 10 9 8 12 12 C 1.39061 * 119.99785 * 330.57916 * 10 9 8 13 13 N 1.31266 * 120.00464 * 342.52975 * 12 10 9 14 14 Si 1.86799 * 120.00126 * 162.53441 * 12 10 9 15 15 H 1.48500 * 109.47356 * 89.99751 * 14 12 10 16 16 H 1.48502 * 109.47350 * 210.00067 * 14 12 10 17 17 H 1.48501 * 109.47131 * 329.99629 * 14 12 10 18 18 C 1.35335 * 120.55895 * 0.03714 * 9 8 7 19 19 O 1.21727 * 121.28524 * 179.97438 * 18 9 8 20 20 C 1.41309 * 119.43009 * 359.74457 * 6 5 4 21 21 C 1.38301 * 119.77588 * 180.02562 * 3 2 1 22 22 H 1.08999 * 109.47006 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46686 * 299.99452 * 1 2 3 24 24 H 1.08998 * 109.47030 * 59.99454 * 1 2 3 25 25 H 1.07994 * 119.61527 * 0.02562 * 4 3 2 26 26 H 1.07997 * 120.10590 * 180.23371 * 5 4 3 27 27 H 1.07997 * 118.34637 * 180.02562 * 8 7 6 28 28 H 0.96999 * 120.00468 * 179.97438 * 13 12 10 29 29 H 1.08001 * 120.26365 * 359.95744 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2827 2.3765 -0.0057 5 6 1.8862 3.6134 -0.0008 6 6 3.2798 3.7052 -0.0009 7 7 3.9119 4.9057 -0.0018 8 6 5.2070 4.9933 -0.0024 9 7 6.0303 3.9075 -0.0016 10 6 7.3898 4.0852 -0.0018 11 1 8.0309 3.3478 0.4581 12 6 7.9431 5.2151 -0.5942 13 7 7.2337 5.9282 -1.4376 14 14 9.6962 5.7180 -0.1901 15 1 10.6304 5.0657 -1.1424 16 1 9.8261 7.1931 -0.3012 17 1 10.0257 5.2950 1.1948 18 6 5.5175 2.6551 -0.0009 19 8 6.2406 1.6758 -0.0006 20 6 4.0536 2.5228 -0.0006 21 6 3.4275 1.2780 -0.0005 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 0.2049 2.3085 -0.0097 26 1 1.2841 4.5100 -0.0015 27 1 5.6544 5.9763 -0.0027 28 1 7.6196 6.7165 -1.8505 29 1 4.0163 0.3727 -0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260537468.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:45 Heat of formation + Delta-G solvation = -22.420270 kcal Electronic energy + Delta-G solvation = -17142.125824 eV Core-core repulsion = 14223.807550 eV Total energy + Delta-G solvation = -2918.318273 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.54443 -39.17894 -36.83977 -36.13652 -33.75196 -31.77870 -30.77618 -28.84343 -27.06203 -25.90464 -23.48918 -22.86533 -21.16580 -19.17125 -17.98739 -17.83714 -16.50065 -15.55248 -15.45641 -15.42853 -14.69799 -14.44336 -14.17972 -13.39715 -13.37798 -13.16943 -12.42745 -12.24303 -12.11827 -11.89598 -11.71384 -11.35323 -11.29168 -10.83598 -10.69241 -10.45023 -9.55544 -9.07956 -8.96171 -8.65287 -8.58948 -7.11046 -6.81818 -4.59087 1.38806 1.52574 2.92890 3.00487 3.06717 3.17519 3.49316 3.59440 3.75256 4.31855 4.42319 5.02389 5.05399 5.11559 5.20361 5.22905 5.39069 5.47201 5.53120 5.82644 6.02013 6.36154 6.44224 6.55678 6.69776 6.95772 7.01439 7.11595 7.45474 7.74480 7.92017 8.27964 8.58168 9.14432 9.22941 10.07410 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.050426 B = 0.006054 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.139336 B = 4623.962220 C = 5081.595822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.322 6.322 3 C 0.068 3.932 4 C -0.164 4.164 5 C -0.092 4.092 6 C 0.140 3.860 7 N -0.571 5.571 8 C 0.380 3.620 9 N -0.360 5.360 10 C -0.344 4.344 11 H 0.117 0.883 12 C 0.047 3.953 13 N -0.850 5.850 14 Si 0.943 3.057 15 H -0.269 1.269 16 H -0.274 1.274 17 H -0.261 1.261 18 C 0.500 3.500 19 O -0.544 6.544 20 C -0.179 4.179 21 C -0.070 4.070 22 H 0.093 0.907 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.126 0.874 26 H 0.132 0.868 27 H 0.199 0.801 28 H 0.287 0.713 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.817 -1.754 2.282 9.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.023 3.977 4 C -0.184 4.184 5 C -0.111 4.111 6 C 0.024 3.976 7 N -0.297 5.297 8 C 0.098 3.902 9 N -0.063 5.063 10 C -0.472 4.472 11 H 0.135 0.865 12 C -0.163 4.163 13 N -0.483 5.483 14 Si 0.767 3.233 15 H -0.195 1.195 16 H -0.199 1.199 17 H -0.185 1.185 18 C 0.296 3.704 19 O -0.423 6.423 20 C -0.187 4.187 21 C -0.091 4.091 22 H 0.112 0.888 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.144 0.856 26 H 0.149 0.851 27 H 0.215 0.785 28 H 0.098 0.902 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.771 -1.775 2.143 9.202 hybrid contribution 0.902 -0.229 -0.164 0.945 sum -7.869 -2.004 1.978 8.358 Atomic orbital electron populations 1.22941 0.79360 1.03223 1.00966 1.86039 1.20516 1.27068 1.89969 1.18645 0.91735 0.83910 1.03382 1.21123 0.99413 0.92047 1.05811 1.20478 0.92300 0.96863 1.01493 1.18850 0.93753 0.88246 0.96737 1.68718 1.07772 1.24145 1.29104 1.24908 0.85163 0.93726 0.86451 1.42633 1.08865 1.05237 1.49566 1.20058 0.80134 1.08921 1.38057 0.86519 1.25671 1.01853 0.95975 0.92775 1.69774 1.39486 1.16783 1.22220 0.85659 0.79628 0.78096 0.79951 1.19455 1.19857 1.18475 1.18420 0.87536 0.83732 0.80728 1.90685 1.62186 1.37253 1.52156 1.20438 0.93464 0.94230 1.10538 1.20018 0.90951 0.97414 1.00670 0.88829 0.93052 0.93051 0.85616 0.85052 0.78480 0.90171 0.84825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.80 101.05 0.99 1.31 15 2 O -0.32 -5.10 10.49 -19.51 -0.20 -5.30 15 3 C 0.07 1.22 6.68 -39.15 -0.26 0.96 15 4 C -0.16 -2.62 9.00 -39.40 -0.35 -2.98 15 5 C -0.09 -1.65 10.02 -39.27 -0.39 -2.04 15 6 C 0.14 3.08 6.63 -84.47 -0.56 2.52 15 7 N -0.57 -13.13 10.37 -11.90 -0.12 -13.25 15 8 C 0.38 9.14 10.23 -89.82 -0.92 8.22 15 9 N -0.36 -9.38 2.76 -63.83 -0.18 -9.55 15 10 C -0.34 -8.91 9.10 -14.89 -0.14 -9.05 15 11 H 0.12 3.07 7.61 -52.49 -0.40 2.67 15 12 C 0.05 1.12 4.97 -17.49 -0.09 1.03 15 13 N -0.85 -20.64 11.21 55.50 0.62 -20.01 15 14 Si 0.94 18.18 29.59 -169.99 -5.03 13.16 15 15 H -0.27 -5.26 7.11 56.52 0.40 -4.85 15 16 H -0.27 -5.07 7.11 56.52 0.40 -4.67 15 17 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 18 C 0.50 13.23 7.61 -12.46 -0.09 13.13 15 19 O -0.54 -15.42 16.50 5.16 0.09 -15.33 15 20 C -0.18 -4.19 5.89 -104.78 -0.62 -4.81 15 21 C -0.07 -1.47 9.61 -39.15 -0.38 -1.85 15 22 H 0.09 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.05 0.48 7.66 -51.93 -0.40 0.08 15 24 H 0.05 0.48 7.63 -51.93 -0.40 0.09 15 25 H 0.13 1.53 6.24 -52.49 -0.33 1.21 15 26 H 0.13 2.05 8.06 -52.49 -0.42 1.63 15 27 H 0.20 4.59 6.14 -52.49 -0.32 4.27 15 28 H 0.29 6.38 8.31 -40.82 -0.34 6.04 15 29 H 0.13 2.80 7.82 -52.49 -0.41 2.39 15 LS Contribution 259.38 15.07 3.91 3.91 Total: -1.00 -29.37 259.38 -5.96 -35.33 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -2.23 Total: 4.61 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -2.81 Total: 6.45 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.32 Total: -42.82 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.12 Total: -20.63 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.37 -5.96 -35.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260537468.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.910 kcal (2) G-P(sol) polarization free energy of solvation -29.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds