Wall clock time and date at job start Mon Mar 30 2020 04:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35926 * 117.00128 * 2 1 4 4 C 1.39323 * 119.77229 * 359.72763 * 3 2 1 5 5 C 1.37625 * 120.76323 * 179.75569 * 4 3 2 6 6 C 1.39662 * 119.77788 * 0.51832 * 5 4 3 7 7 N 1.35676 * 121.53696 * 179.71644 * 6 5 4 8 8 C 1.29801 * 121.63834 * 180.02562 * 7 6 5 9 9 N 1.36275 * 123.30062 * 359.97438 * 8 7 6 10 10 C 1.37100 * 119.72121 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00554 * 150.58368 * 10 9 8 12 12 C 1.39061 * 119.99785 * 330.57916 * 10 9 8 13 13 N 1.31266 * 120.00464 * 342.52975 * 12 10 9 14 14 Si 1.86799 * 120.00126 * 162.53441 * 12 10 9 15 15 H 1.48500 * 109.47356 * 89.99751 * 14 12 10 16 16 H 1.48502 * 109.47350 * 210.00067 * 14 12 10 17 17 H 1.48501 * 109.47131 * 329.99629 * 14 12 10 18 18 C 1.35335 * 120.55895 * 0.03714 * 9 8 7 19 19 O 1.21727 * 121.28524 * 179.97438 * 18 9 8 20 20 C 1.41309 * 119.43009 * 359.74457 * 6 5 4 21 21 C 1.38301 * 119.77588 * 180.02562 * 3 2 1 22 22 H 1.08999 * 109.47006 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46686 * 299.99452 * 1 2 3 24 24 H 1.08998 * 109.47030 * 59.99454 * 1 2 3 25 25 H 1.07994 * 119.61527 * 0.02562 * 4 3 2 26 26 H 1.07997 * 120.10590 * 180.23371 * 5 4 3 27 27 H 1.07997 * 118.34637 * 180.02562 * 8 7 6 28 28 H 0.96999 * 120.00468 * 179.97438 * 13 12 10 29 29 H 1.08001 * 120.26365 * 359.95744 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2827 2.3765 -0.0057 5 6 1.8862 3.6134 -0.0008 6 6 3.2798 3.7052 -0.0009 7 7 3.9119 4.9057 -0.0018 8 6 5.2070 4.9933 -0.0024 9 7 6.0303 3.9075 -0.0016 10 6 7.3898 4.0852 -0.0018 11 1 8.0309 3.3478 0.4581 12 6 7.9431 5.2151 -0.5942 13 7 7.2337 5.9282 -1.4376 14 14 9.6962 5.7180 -0.1901 15 1 10.6304 5.0657 -1.1424 16 1 9.8261 7.1931 -0.3012 17 1 10.0257 5.2950 1.1948 18 6 5.5175 2.6551 -0.0009 19 8 6.2406 1.6758 -0.0006 20 6 4.0536 2.5228 -0.0006 21 6 3.4275 1.2780 -0.0005 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 0.2049 2.3085 -0.0097 26 1 1.2841 4.5100 -0.0015 27 1 5.6544 5.9763 -0.0027 28 1 7.6196 6.7165 -1.8505 29 1 4.0163 0.3727 -0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260537468.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:45 Heat of formation + Delta-G solvation = -41.039459 kcal Electronic energy + Delta-G solvation = -17142.933212 eV Core-core repulsion = 14223.807550 eV Total energy + Delta-G solvation = -2919.125662 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.31254 -40.61073 -38.54977 -37.90902 -35.48075 -33.63498 -32.32539 -30.38569 -28.31058 -27.59914 -25.18919 -24.51599 -22.84770 -20.83342 -19.65648 -19.48776 -18.14733 -17.32392 -16.88766 -16.71123 -16.41203 -16.12852 -15.80017 -15.18109 -14.81794 -14.72919 -14.03953 -13.87794 -13.60324 -13.48247 -13.19470 -13.00094 -12.80225 -12.20043 -12.04428 -11.97514 -11.21782 -11.03911 -10.77193 -10.43684 -10.15001 -8.87138 -8.51736 -6.54357 -0.22857 -0.11284 1.32216 1.37714 1.42206 1.56346 1.93427 2.04786 2.31881 2.59224 2.65414 3.24961 3.43356 3.59040 3.78574 4.02055 4.22636 4.43546 4.48879 4.49792 4.71917 4.76601 4.86292 4.99306 5.14452 5.21759 5.36658 5.57654 5.62143 6.03805 6.34421 6.47927 6.69162 7.27236 7.33426 8.27603 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.050426 B = 0.006054 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.139336 B = 4623.962220 C = 5081.595822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.336 6.336 3 C 0.097 3.903 4 C -0.143 4.143 5 C -0.077 4.077 6 C 0.106 3.894 7 N -0.559 5.559 8 C 0.368 3.632 9 N -0.369 5.369 10 C -0.387 4.387 11 H 0.098 0.902 12 C 0.021 3.979 13 N -0.870 5.870 14 Si 1.014 2.986 15 H -0.270 1.270 16 H -0.253 1.253 17 H -0.260 1.260 18 C 0.471 3.529 19 O -0.589 6.589 20 C -0.194 4.194 21 C -0.105 4.105 22 H 0.119 0.881 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.181 0.819 26 H 0.165 0.835 27 H 0.201 0.799 28 H 0.298 0.702 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.653 -1.040 2.278 11.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.250 6.250 3 C 0.051 3.949 4 C -0.163 4.163 5 C -0.096 4.096 6 C -0.008 4.008 7 N -0.284 5.284 8 C 0.084 3.916 9 N -0.072 5.072 10 C -0.514 4.514 11 H 0.115 0.885 12 C -0.187 4.187 13 N -0.503 5.503 14 Si 0.833 3.167 15 H -0.195 1.195 16 H -0.176 1.176 17 H -0.184 1.184 18 C 0.269 3.731 19 O -0.473 6.473 20 C -0.201 4.201 21 C -0.126 4.126 22 H 0.138 0.862 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.198 0.802 26 H 0.183 0.817 27 H 0.218 0.782 28 H 0.109 0.891 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.693 -1.045 2.134 11.932 hybrid contribution 1.447 -0.580 -0.187 1.570 sum -10.247 -1.625 1.947 10.556 Atomic orbital electron populations 1.23441 0.75926 1.05832 1.02773 1.86061 1.23949 1.25904 1.89120 1.18707 0.90716 0.85680 0.99799 1.21623 1.01848 0.90090 1.02705 1.20902 0.90390 0.99121 0.99153 1.19277 0.95571 0.87184 0.98802 1.68690 1.07183 1.24923 1.27627 1.24958 0.85575 0.93355 0.87665 1.42735 1.09188 1.05501 1.49748 1.20146 0.80483 1.10233 1.40545 0.88454 1.26563 1.05832 0.94699 0.91596 1.69806 1.41260 1.17100 1.22137 0.84667 0.74030 0.78583 0.79457 1.19543 1.17629 1.18405 1.19068 0.89107 0.83649 0.81229 1.90609 1.63374 1.38301 1.55005 1.20436 0.91922 0.95963 1.11746 1.19971 0.92838 0.96073 1.03736 0.86238 0.91029 0.91171 0.80184 0.81736 0.78244 0.89096 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.80 113.37 1.11 1.33 15 2 O -0.34 -9.55 10.49 -92.72 -0.97 -10.52 15 3 C 0.10 3.22 6.68 22.55 0.15 3.37 15 4 C -0.14 -3.89 9.00 22.39 0.20 -3.68 15 5 C -0.08 -2.48 10.02 22.47 0.23 -2.25 15 6 C 0.11 4.63 6.63 39.65 0.26 4.89 15 7 N -0.56 -25.82 10.37 -191.55 -1.99 -27.80 15 8 C 0.37 18.31 10.23 180.07 1.84 20.15 15 9 N -0.37 -20.34 2.76 -473.74 -1.31 -21.64 15 10 C -0.39 -21.27 9.10 84.07 0.77 -20.51 15 11 H 0.10 5.55 7.61 -2.91 -0.02 5.53 15 12 C 0.02 1.02 4.97 84.97 0.42 1.45 15 13 N -0.87 -42.88 11.21 21.67 0.24 -42.64 15 14 Si 1.01 37.59 29.59 68.60 2.03 39.62 15 15 H -0.27 -10.04 7.11 99.48 0.71 -9.33 15 16 H -0.25 -8.47 7.11 99.48 0.71 -7.76 15 17 H -0.26 -9.55 7.11 99.48 0.71 -8.84 15 18 C 0.47 26.71 7.61 86.45 0.66 27.37 15 19 O -0.59 -36.29 16.50 -4.44 -0.07 -36.36 15 20 C -0.19 -9.39 5.89 -19.97 -0.12 -9.51 15 21 C -0.11 -4.52 9.61 22.55 0.22 -4.30 15 22 H 0.12 1.31 8.14 -2.39 -0.02 1.29 15 23 H 0.07 0.89 7.66 -2.39 -0.02 0.87 15 24 H 0.07 0.89 7.63 -2.39 -0.02 0.87 15 25 H 0.18 3.01 6.24 -2.91 -0.02 3.00 15 26 H 0.17 4.27 8.06 -2.91 -0.02 4.25 15 27 H 0.20 9.62 6.14 -2.91 -0.02 9.60 15 28 H 0.30 13.15 8.31 -92.71 -0.77 12.38 15 29 H 0.12 5.29 7.82 -2.91 -0.02 5.27 15 Total: -1.00 -68.78 259.38 4.86 -63.92 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 1.19 Total: 17.11 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 5.74 Total: 18.31 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -3.05 Total: -92.08 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -1.05 Total: -46.88 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Total: -68.78 4.86 -63.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260537468.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.880 kcal (2) G-P(sol) polarization free energy of solvation -68.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds