Wall clock time and date at job start Mon Mar 30 2020 03:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35577 * 119.63006 * 2 1 4 4 C 1.39941 * 120.25998 * 180.02562 * 3 2 1 5 5 C 1.37969 * 119.33208 * 0.02562 * 4 3 2 6 6 C 1.39561 * 119.13236 * 0.02562 * 5 4 3 7 7 C 1.41387 * 133.24050 * 179.97438 * 6 5 4 8 8 C 1.46839 * 126.19641 * 0.02562 * 7 6 5 9 9 O 1.21617 * 119.99731 * 359.97438 * 8 7 6 10 10 O 1.34898 * 120.00174 * 180.02562 * 8 7 6 11 11 N 1.33418 * 107.60545 * 180.02562 * 7 6 5 12 12 C 1.32841 * 109.69534 * 0.02562 * 11 7 6 13 13 C 1.39623 * 125.42482 * 180.02562 * 12 11 7 14 14 H 1.08002 * 119.99975 * 158.53809 * 13 12 11 15 15 C 1.40069 * 120.00134 * 338.53373 * 13 12 11 16 16 N 1.30816 * 119.99981 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00179 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47067 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47094 * 120.00006 * 17 15 13 20 20 H 1.48502 * 109.47349 * 239.99927 * 17 15 13 21 21 N 1.35923 * 119.63065 * 180.02562 * 2 1 3 22 22 H 1.08995 * 109.47370 * 264.09493 * 1 2 3 23 23 H 1.09004 * 109.46789 * 24.09055 * 1 2 3 24 24 H 1.09000 * 109.46667 * 144.08581 * 1 2 3 25 25 H 1.08003 * 119.86920 * 0.04095 * 3 2 1 26 26 H 1.08002 * 120.33269 * 180.02562 * 4 3 2 27 27 H 1.08001 * 120.43196 * 180.26934 * 5 4 3 28 28 H 0.96696 * 117.00052 * 179.97438 * 10 8 7 29 29 H 0.97005 * 119.99842 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1773 1.1785 0.0000 4 6 3.5766 1.1939 -0.0005 5 6 4.2657 -0.0014 -0.0016 6 6 3.5489 -1.1989 -0.0027 7 6 3.9351 -2.5590 -0.0043 8 6 5.3119 -3.0694 -0.0049 9 8 6.2482 -2.2932 -0.0044 10 8 5.5383 -4.3993 -0.0071 11 7 2.8220 -3.2946 -0.0053 12 6 1.7590 -2.4980 -0.0049 13 6 0.4290 -2.9232 -0.0052 14 1 -0.3504 -2.2587 0.3374 15 6 0.1057 -4.2115 -0.4497 16 7 1.0499 -5.0165 -0.8643 17 14 -1.6736 -4.7801 -0.4507 18 1 -2.5421 -3.6896 0.0611 19 1 -2.0813 -5.1281 -1.8357 20 1 -1.8122 -5.9744 0.4209 21 7 2.1790 -1.1815 -0.0005 22 1 -0.3634 -0.1057 1.0221 23 1 -0.3633 0.9382 -0.4195 24 1 -0.3633 -0.8323 -0.6028 25 1 1.6291 2.1091 0.0007 26 1 4.1118 2.1320 -0.0001 27 1 5.3456 -0.0103 0.0023 28 1 6.4613 -4.6875 -0.0078 29 1 0.8260 -5.9089 -1.1718 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260549773.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:31 Heat of formation + Delta-G solvation = -14.419320 kcal Electronic energy + Delta-G solvation = -17461.551327 eV Core-core repulsion = 14543.580001 eV Total energy + Delta-G solvation = -2917.971326 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.38154 -38.97564 -36.46806 -35.23096 -33.80420 -32.76336 -30.49196 -28.67142 -27.37162 -25.12177 -23.35907 -22.16284 -20.69126 -19.64148 -17.56126 -17.29298 -16.05860 -15.52459 -15.27835 -15.13193 -14.78204 -14.45396 -14.36329 -13.28397 -12.99657 -12.57840 -12.51086 -12.12671 -11.70720 -11.46365 -11.38467 -10.92789 -10.84395 -10.72072 -10.33658 -10.28164 -9.87422 -9.51987 -9.31592 -8.56707 -8.15580 -6.79352 -6.65579 -4.43037 1.50504 1.95665 2.92290 3.04605 3.08834 3.21925 3.57551 3.88429 4.12201 4.17681 4.57443 5.13041 5.23657 5.45241 5.65446 5.73953 5.86554 5.96796 5.99567 6.07274 6.39296 6.59466 6.68702 6.91276 7.00283 7.03655 7.17551 7.27080 7.59851 7.81507 8.01171 8.63258 8.71715 8.81449 9.56777 10.28095 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.019054 B = 0.010609 C = 0.006879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.153777 B = 2638.739360 C = 4069.290307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.123 3.877 3 C -0.187 4.187 4 C -0.146 4.146 5 C -0.075 4.075 6 C 0.003 3.997 7 C -0.045 4.045 8 C 0.574 3.426 9 O -0.548 6.548 10 O -0.497 6.497 11 N -0.430 5.430 12 C 0.356 3.644 13 C -0.462 4.462 14 H 0.096 0.904 15 C 0.080 3.920 16 N -0.746 5.746 17 Si 0.917 3.083 18 H -0.261 1.261 19 H -0.273 1.273 20 H -0.272 1.272 21 N -0.395 5.395 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.100 0.900 25 H 0.130 0.870 26 H 0.121 0.879 27 H 0.137 0.863 28 H 0.396 0.604 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.049 5.910 0.621 6.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.017 3.983 3 C -0.209 4.209 4 C -0.168 4.168 5 C -0.094 4.094 6 C -0.108 4.108 7 C -0.179 4.179 8 C 0.422 3.578 9 O -0.440 6.440 10 O -0.305 6.305 11 N -0.149 5.149 12 C 0.117 3.883 13 C -0.500 4.500 14 H 0.114 0.886 15 C -0.144 4.144 16 N -0.370 5.370 17 Si 0.741 3.259 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.197 1.197 21 N -0.071 5.071 22 H 0.094 0.906 23 H 0.091 0.909 24 H 0.118 0.882 25 H 0.148 0.852 26 H 0.139 0.861 27 H 0.155 0.845 28 H 0.252 0.748 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.211 5.036 0.537 5.208 hybrid contribution 0.004 0.398 -0.034 0.400 sum -1.207 5.434 0.503 5.590 Atomic orbital electron populations 1.21166 0.88982 1.04214 1.03684 1.20178 0.94750 0.84503 0.98858 1.20279 0.94562 0.95752 1.10302 1.21022 0.93698 0.97224 1.04844 1.20682 0.99864 0.89544 0.99344 1.18636 0.83498 0.94478 1.14157 1.19254 0.91571 0.88102 1.18931 1.19524 0.87836 0.79378 0.71080 1.90788 1.44891 1.58170 1.50137 1.84840 1.34526 1.25264 1.85861 1.71234 0.94631 1.27905 1.21098 1.20355 0.95148 0.73645 0.99152 1.18362 0.89012 0.99960 1.42714 0.88604 1.25748 0.99392 0.95824 0.93430 1.69971 1.33492 1.06533 1.26983 0.86117 0.81520 0.79527 0.78695 1.18451 1.19852 1.19702 1.43314 1.06177 1.06940 1.50692 0.90589 0.90928 0.88184 0.85221 0.86104 0.84530 0.74845 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 8.64 36.01 0.31 -1.68 15 2 C 0.12 2.43 6.79 -81.73 -0.55 1.88 15 3 C -0.19 -3.21 9.58 -39.90 -0.38 -3.59 15 4 C -0.15 -2.55 10.15 -39.04 -0.40 -2.95 15 5 C -0.07 -1.54 9.78 -39.19 -0.38 -1.92 15 6 C 0.00 0.06 6.72 -83.87 -0.56 -0.50 15 7 C -0.04 -1.17 7.09 -82.50 -0.58 -1.76 15 8 C 0.57 13.39 8.32 34.21 0.28 13.68 15 9 O -0.55 -12.63 16.50 -19.35 -0.32 -12.95 15 10 O -0.50 -10.16 13.44 -41.04 -0.55 -10.71 15 11 N -0.43 -12.19 9.63 -8.70 -0.08 -12.27 15 12 C 0.36 9.52 7.31 -155.25 -1.13 8.39 15 13 C -0.46 -11.58 7.95 -38.38 -0.30 -11.89 15 14 H 0.10 2.15 5.34 -52.49 -0.28 1.87 15 15 C 0.08 1.98 5.49 -17.30 -0.10 1.88 15 16 N -0.75 -19.82 12.07 55.56 0.67 -19.15 15 17 Si 0.92 17.86 29.56 -169.99 -5.03 12.84 15 18 H -0.26 -4.83 7.11 56.52 0.40 -4.43 15 19 H -0.27 -5.26 7.11 56.52 0.40 -4.85 15 20 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 21 N -0.40 -9.49 2.96 -56.01 -0.17 -9.65 15 22 H 0.08 1.14 8.12 -51.93 -0.42 0.72 15 23 H 0.07 0.91 8.00 -51.93 -0.42 0.49 15 24 H 0.10 1.78 5.67 -51.93 -0.29 1.48 15 25 H 0.13 1.73 8.02 -52.48 -0.42 1.31 15 26 H 0.12 1.69 8.06 -52.49 -0.42 1.26 15 27 H 0.14 2.69 7.13 -52.49 -0.37 2.32 15 28 H 0.40 5.43 9.11 45.56 0.42 5.84 15 29 H 0.28 6.72 8.30 -40.82 -0.34 6.38 15 LS Contribution 261.06 15.07 3.93 3.93 Total: -1.00 -32.22 261.06 -6.69 -38.92 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -1.35 Total: 7.50 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -3.80 Total: 1.54 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.42 Total: -41.07 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.87 Total: -23.66 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.22 -6.69 -38.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260549773.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.498 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds