Wall clock time and date at job start Mon Mar 30 2020 03:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35577 * 119.63006 * 2 1 4 4 C 1.39941 * 120.25998 * 180.02562 * 3 2 1 5 5 C 1.37969 * 119.33208 * 0.02562 * 4 3 2 6 6 C 1.39561 * 119.13236 * 0.02562 * 5 4 3 7 7 C 1.41387 * 133.24050 * 179.97438 * 6 5 4 8 8 C 1.46839 * 126.19641 * 0.02562 * 7 6 5 9 9 O 1.21617 * 119.99731 * 359.97438 * 8 7 6 10 10 O 1.34898 * 120.00174 * 180.02562 * 8 7 6 11 11 N 1.33418 * 107.60545 * 180.02562 * 7 6 5 12 12 C 1.32841 * 109.69534 * 0.02562 * 11 7 6 13 13 C 1.39623 * 125.42482 * 180.02562 * 12 11 7 14 14 H 1.08002 * 119.99975 * 158.53809 * 13 12 11 15 15 C 1.40069 * 120.00134 * 338.53373 * 13 12 11 16 16 N 1.30816 * 119.99981 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00179 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47067 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47094 * 120.00006 * 17 15 13 20 20 H 1.48502 * 109.47349 * 239.99927 * 17 15 13 21 21 N 1.35923 * 119.63065 * 180.02562 * 2 1 3 22 22 H 1.08995 * 109.47370 * 264.09493 * 1 2 3 23 23 H 1.09004 * 109.46789 * 24.09055 * 1 2 3 24 24 H 1.09000 * 109.46667 * 144.08581 * 1 2 3 25 25 H 1.08003 * 119.86920 * 0.04095 * 3 2 1 26 26 H 1.08002 * 120.33269 * 180.02562 * 4 3 2 27 27 H 1.08001 * 120.43196 * 180.26934 * 5 4 3 28 28 H 0.96696 * 117.00052 * 179.97438 * 10 8 7 29 29 H 0.97005 * 119.99842 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1773 1.1785 0.0000 4 6 3.5766 1.1939 -0.0005 5 6 4.2657 -0.0014 -0.0016 6 6 3.5489 -1.1989 -0.0027 7 6 3.9351 -2.5590 -0.0043 8 6 5.3119 -3.0694 -0.0049 9 8 6.2482 -2.2932 -0.0044 10 8 5.5383 -4.3993 -0.0071 11 7 2.8220 -3.2946 -0.0053 12 6 1.7590 -2.4980 -0.0049 13 6 0.4290 -2.9232 -0.0052 14 1 -0.3504 -2.2587 0.3374 15 6 0.1057 -4.2115 -0.4497 16 7 1.0499 -5.0165 -0.8643 17 14 -1.6736 -4.7801 -0.4507 18 1 -2.5421 -3.6896 0.0611 19 1 -2.0813 -5.1281 -1.8357 20 1 -1.8122 -5.9744 0.4209 21 7 2.1790 -1.1815 -0.0005 22 1 -0.3634 -0.1057 1.0221 23 1 -0.3633 0.9382 -0.4195 24 1 -0.3633 -0.8323 -0.6028 25 1 1.6291 2.1091 0.0007 26 1 4.1118 2.1320 -0.0001 27 1 5.3456 -0.0103 0.0023 28 1 6.4613 -4.6875 -0.0078 29 1 0.8260 -5.9089 -1.1718 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260549773.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:31 Heat of formation + Delta-G solvation = -36.279213 kcal Electronic energy + Delta-G solvation = -17462.499243 eV Core-core repulsion = 14543.580001 eV Total energy + Delta-G solvation = -2918.919242 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.12863 -40.68230 -38.11112 -36.91504 -35.53564 -34.40732 -32.16326 -30.40715 -28.93759 -26.80561 -25.04073 -23.81507 -22.40085 -21.37765 -19.29325 -19.01863 -17.82120 -17.08929 -16.91333 -16.87811 -16.42231 -16.04627 -15.98877 -14.91054 -14.55311 -14.17146 -13.97286 -13.55651 -13.32004 -12.99721 -12.94527 -12.50602 -12.44656 -12.30629 -11.90496 -11.85573 -11.59941 -11.22780 -11.04504 -10.42122 -9.87818 -8.55175 -8.42185 -6.28110 -0.11219 0.33056 1.29166 1.45418 1.58623 1.62398 1.94347 2.27163 2.48105 2.50621 2.81642 3.39027 3.71015 4.00802 4.06747 4.28606 4.36941 4.42146 4.75620 4.76692 4.92813 5.08852 5.21243 5.28184 5.36639 5.45778 5.54248 5.60209 5.94601 6.14030 6.21122 6.83399 6.99410 7.14909 7.77103 8.54075 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.019054 B = 0.010609 C = 0.006879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.153777 B = 2638.739360 C = 4069.290307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.095 3.905 3 C -0.173 4.173 4 C -0.096 4.096 5 C -0.123 4.123 6 C 0.017 3.983 7 C -0.118 4.118 8 C 0.574 3.426 9 O -0.557 6.557 10 O -0.503 6.503 11 N -0.476 5.476 12 C 0.321 3.679 13 C -0.483 4.483 14 H 0.116 0.884 15 C 0.031 3.969 16 N -0.802 5.802 17 Si 0.997 3.003 18 H -0.240 1.240 19 H -0.270 1.270 20 H -0.274 1.274 21 N -0.398 5.398 22 H 0.086 0.914 23 H 0.118 0.882 24 H 0.078 0.922 25 H 0.186 0.814 26 H 0.173 0.827 27 H 0.140 0.860 28 H 0.422 0.578 29 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.787 9.503 0.812 9.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.010 4.010 3 C -0.194 4.194 4 C -0.118 4.118 5 C -0.142 4.142 6 C -0.095 4.095 7 C -0.248 4.248 8 C 0.423 3.577 9 O -0.451 6.451 10 O -0.314 6.314 11 N -0.195 5.195 12 C 0.079 3.921 13 C -0.522 4.522 14 H 0.134 0.866 15 C -0.188 4.188 16 N -0.428 5.428 17 Si 0.817 3.183 18 H -0.163 1.163 19 H -0.195 1.195 20 H -0.199 1.199 21 N -0.073 5.073 22 H 0.104 0.896 23 H 0.136 0.864 24 H 0.097 0.903 25 H 0.204 0.796 26 H 0.190 0.810 27 H 0.158 0.842 28 H 0.281 0.719 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.906 8.641 0.736 9.146 hybrid contribution 0.603 -0.333 -0.081 0.694 sum -2.303 8.308 0.656 8.646 Atomic orbital electron populations 1.21241 0.86400 1.05767 1.04265 1.21209 0.97002 0.83895 0.98928 1.21039 0.94646 0.96769 1.06919 1.21766 0.94248 0.97840 0.97925 1.20875 1.00336 0.89533 1.03491 1.19250 0.84190 0.95242 1.10841 1.19706 0.92233 0.89288 1.23602 1.19307 0.87239 0.79971 0.71209 1.90740 1.44732 1.58425 1.51229 1.84776 1.37035 1.24124 1.85506 1.71060 0.95844 1.29762 1.22797 1.20741 0.95624 0.74745 1.00979 1.18840 0.89042 1.00941 1.43374 0.86590 1.26858 1.04083 0.95571 0.92275 1.70135 1.36285 1.07122 1.29301 0.84934 0.75601 0.79132 0.78621 1.16256 1.19501 1.19942 1.43604 1.06361 1.07765 1.49543 0.89592 0.86381 0.90332 0.79637 0.80967 0.84221 0.71887 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.43 8.64 71.24 0.62 -2.81 15 2 C 0.10 3.47 6.79 41.31 0.28 3.75 15 3 C -0.17 -4.91 9.58 22.07 0.21 -4.69 15 4 C -0.10 -2.85 10.15 22.62 0.23 -2.62 15 5 C -0.12 -4.88 9.78 22.53 0.22 -4.66 15 6 C 0.02 0.85 6.72 39.43 0.27 1.12 15 7 C -0.12 -6.53 7.09 41.93 0.30 -6.23 15 8 C 0.57 28.30 8.32 70.07 0.58 28.88 15 9 O -0.56 -26.63 16.50 19.45 0.32 -26.31 15 10 O -0.50 -21.79 13.44 -58.13 -0.78 -22.58 15 11 N -0.48 -28.65 9.63 -181.44 -1.75 -30.40 15 12 C 0.32 17.84 7.31 133.33 0.97 18.82 15 13 C -0.48 -24.88 7.95 23.05 0.18 -24.70 15 14 H 0.12 5.19 5.34 -2.91 -0.02 5.18 15 15 C 0.03 1.56 5.49 85.29 0.47 2.03 15 16 N -0.80 -45.12 12.07 21.85 0.26 -44.86 15 17 Si 1.00 37.13 29.56 68.60 2.03 39.16 15 18 H -0.24 -7.98 7.11 99.48 0.71 -7.28 15 19 H -0.27 -9.77 7.11 99.48 0.71 -9.06 15 20 H -0.27 -10.18 7.11 99.48 0.71 -9.47 15 21 N -0.40 -19.15 2.96 -331.11 -0.98 -20.13 15 22 H 0.09 2.29 8.12 -2.39 -0.02 2.27 15 23 H 0.12 2.26 8.00 -2.38 -0.02 2.24 15 24 H 0.08 2.64 5.67 -2.39 -0.01 2.63 15 25 H 0.19 3.30 8.02 -2.91 -0.02 3.28 15 26 H 0.17 3.46 8.06 -2.91 -0.02 3.43 15 27 H 0.14 5.40 7.13 -2.91 -0.02 5.38 15 28 H 0.42 12.15 9.11 -74.06 -0.67 11.47 15 29 H 0.28 14.35 8.30 -92.70 -0.77 13.58 15 Total: -1.00 -76.56 261.06 3.97 -72.58 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.54 Total: 23.65 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 4.33 Total: 8.88 kcal Atomic # 7 Polarization: -92.92 SS G_CDS: -2.47 Total: -95.39 kcal Atomic # 8 Polarization: -48.42 SS G_CDS: -0.46 Total: -48.88 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Total: -76.56 3.97 -72.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260549773.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.305 kcal (2) G-P(sol) polarization free energy of solvation -76.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds